Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001571

Physical Location & Seq

Genomic Coordinates Reverse (-)

33782769 .. 33790272

Gene Structure 7504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTGGCCAAGAGCATGAGTCTGGTATTATGCAGTGGGCTCTTAGTCTACTTGATGGCGATCCAGCTTATAATACTGTCTATTGTGGTGACATGATACAACACAATGCTAATGACATCTACTGCGGACAATATAATAGAGGTCAATATGGTACTGAATCTAACCATGTAGAGAATGATGAGATCATTGCATACACACTTCAAGAAGAATATTCACGACTATCTGTACCAGAAGCTTCTGGATACTCACGTGGAGATGAAGAGCAATCACAAGCATCTACTCATGCAGATGATTGGTATAGTTTGTCCAGAAGGAACTATTGTTCAGACAGTTATTATCCAAATGAAGGAGCATGCACAGTGGTGCCTTCTAGTTCATGTTCTAGCCCAGGTCATTTGAAGTTAACTGATGAGTGTGCAGTTGACAGTGAAGTCGGCTGGAGCTTCAATGAAATGATGCCCGTTCCTCATATTCCTAGAATTAATGGAGAAATTCCTTCAATTGATGAAGCAACTTCAGATCATCAGAGGCTGCTTGACAGACTGCAATTATATGGCGTCGTGGAGCGTAAGGTTCAAGGAGATGGCAACTGTCAGTTTAGTGCTTTATCAGACCAATTGTATCACTCACCAGACCACCACAATGATGTGAGAAGGAAAGTCGTAAATCAGCTCAAGTCTCACCCAGAAATTTACGAGGGATATGTTCCTATGGCATACGATGACTATTTGGAGAAGATGTCAAAGAGTGGCGAGTGGGGTGATCATGTTACATTGCAGGCTGCTGCTGATTCGTATGGTGTGAAAATATTTGTCTTCACTTCTTTCAAGGATACATGTTGCATAGAGATTCTTCCTAATGACCAAACGTCAAAACAAGTTATTATGTTGAGTTTCTGGGCAGAGGTGCATTACAACTCAATTTATCCTCAAGAAGGTACACCCTCCTCAGATGAGTATAGAAAGAAGAAAAAGTGGTGGACATTTGGGAATAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

333

Amino Acids

37.83

Weight (kDa)

4.79

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTU	PF02338	193 - 282	5.4e-12	OTU-like cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03330 AT5G03330 AT5G03330 AT5G03330
fragaria_vesca	FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161
malus_domestica	MD04G1095000.v1.1 MD12G1115200.v1.1
prunus_persica	Prupe.6G106600_v2.0.a1 Prupe.6G234300_v2.0.a1
pyrus_communis	pycom04g09020 pycom12g11450
rosa_chinensis	RchiOBHm_Chr3g0470011 RchiOBHm_Chr5g0058171
rosa_laevigata	RLG00000024304 RLG00000035200
rosa_multiflora	Rmu_sc0000367.1_g000036 Rmu_sc0009972.1_g000001 Rmu_sc0017440.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022390 Rroxscaffold_3G00230070 Rroxscaffold_3G00230090 Rroxscaffold_3G00239050 Rroxscaffold_6G00411280
rosa_rugosa	Rorug03G0106100 Rorug03G0106100 Rorug03G0106100 Rorug05G0312300 Rorug05G0312400
rosa_samantha	Rh3AG155200 Rh3BG179300 Rh3CG169900 Rh3DG195800 Rh5AG380300 Rh5BG391400 Rh5CG415300 Rh5DG406100
rosa_wichuraiana	Rw3G014620 Rw5G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AasI	GACNNNNNNGTC	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	49
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	2 cut(s)	492, 690
AcuI	CTGAAG	1 cut(s)	501
AcvI	CACGTG	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	3 cut(s)	154, 228, 940
AfiI	CCNNNNNNNGG	2 cut(s)	347, 935
AflIII	ACRYGT	1 cut(s)	836
AgsI	TTSAA	6 cut(s)	203, 400, 448, 501, 578, 829
AhdI	GACNNNNNGTC	1 cut(s)	868
AjnI	CCWGG	1 cut(s)	388
AleI	CACNNNNGTG	1 cut(s)	362
AloI	GAACNNNNNNTCC	2 cut(s)	307, 339
AluBI	AGCT	4 cut(s)	68, 236, 444, 673
AluI	AGCT	4 cut(s)	68, 236, 444, 673
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	1 cut(s)	56
AlwNI	CAGNNNCTG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	3 cut(s)	532, 782, 785
ApoI	RAATTY	2 cut(s)	492, 690
AseI	ATTAAT	1 cut(s)	483
AsuHPI	GGTGA	4 cut(s)	101, 621, 674, 773
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BalI	TGGCCA	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	43
BbrPI	CACGTG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	808
BbvI	GCAGC	3 cut(s)	519, 769, 772
BccI	CCATC	2 cut(s)	50, 578
BciT130I	CCWGG	1 cut(s)	390
BciVI	GTATCC	2 cut(s)	236, 826
BclI	TGATCA	1 cut(s)	763
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	3 cut(s)	372, 384, 477
BfuI	GTATCC	2 cut(s)	236, 826
BisI	GCNGC	3 cut(s)	533, 783, 786
BlsI	GCNGC	3 cut(s)	534, 784, 787
Bme1390I	CCNGG	1 cut(s)	390
BmeRI	GACNNNNNGTC	1 cut(s)	868
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	284, 447
BpiI	GAAGAC	1 cut(s)	808
BpmI	CTGGAG	1 cut(s)	460
BpuEI	CTTGAG	2 cut(s)	659, 915
BsaAI	YACGTR	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 935
Bse3DI	GCAATG	2 cut(s)	186, 773
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	388
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	347, 935
BseMI	GCAATG	2 cut(s)	186, 773
BseMII	CTCAG	1 cut(s)	963
BseRI	GAGGAG	1 cut(s)	937
BseXI	GCAGC	3 cut(s)	519, 769, 772
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	347, 935
BsmAI	GTCTC	1 cut(s)	684
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	4 cut(s)	61, 183, 520, 763
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	962
BspLI	GGNNCC	1 cut(s)	366
BspPI	GGATC	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	364
BsrDI	GCAATG	2 cut(s)	186, 773
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	4 cut(s)	61, 183, 520, 763
BssNI	GRCGYC	1 cut(s)	558
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	5 cut(s)	79, 332, 361, 428, 593
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	3 cut(s)	7, 355, 780
BstDEI	CTNAG	2 cut(s)	44, 949
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstKTI	GATC	4 cut(s)	64, 186, 523, 766
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	4 cut(s)	61, 183, 520, 763
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	2 cut(s)	357, 840
BstSCI	CCNGG	1 cut(s)	388
BstV1I	GCAGC	3 cut(s)	519, 769, 772
BstV2I	GAAGAC	1 cut(s)	808
BsuI	GTATCC	2 cut(s)	236, 826
BsuRI	GGCC	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	3 cut(s)	41, 366, 433
Cac8I	GCNNGC	3 cut(s)	7, 355, 780
CaiI	CAGNNNCTG	1 cut(s)	532
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	3 cut(s)	153, 227, 939
CviAII	CATG	8 cut(s)	17, 94, 167, 284, 354, 378, 767, 837
CviQI	GTAC	3 cut(s)	153, 227, 939
DdeI	CTNAG	2 cut(s)	44, 949
DpnI	GATC	4 cut(s)	63, 185, 522, 765
DpnII	GATC	4 cut(s)	61, 183, 520, 763
DrdI	GACNNNNNNGTC	1 cut(s)	431
DriI	GACNNNNNGTC	1 cut(s)	868
DseDI	GACNNNNNNGTC	1 cut(s)	431
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	255
Eam1105I	GACNNNNNGTC	1 cut(s)	868
EarI	CTCTTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	501
Eco72I	CACGTG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoRII	CCWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	43
FaeI	CATG	8 cut(s)	20, 97, 170, 287, 357, 381, 770, 840
FatI	CATG	8 cut(s)	16, 93, 166, 283, 353, 377, 766, 836
FbaI	TGATCA	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	3 cut(s)	533, 783, 786
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	533, 783, 786
FspBI	CTAG	3 cut(s)	372, 384, 477
GluI	GCNGC	3 cut(s)	533, 783, 786
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	9
HgaI	GACGC	1 cut(s)	547
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	8 cut(s)	20, 97, 170, 287, 357, 381, 770, 840
HincII	GTYRAC	2 cut(s)	405, 424
HindII	GTYRAC	2 cut(s)	405, 424
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	4 cut(s)	20, 158, 791, 850
HpaI	GTTAAC	1 cut(s)	405
HphI	GGTGA	4 cut(s)	101, 621, 674, 773
Hpy166II	GTNNAC	5 cut(s)	50, 405, 424, 941, 981
Hpy188I	TCNGA	5 cut(s)	328, 520, 528, 613, 952
Hpy188III	TCNNGA	5 cut(s)	203, 216, 240, 309, 932
Hpy8I	GTNNAC	5 cut(s)	50, 405, 424, 941, 981
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	6 cut(s)	306, 341, 378, 507, 648, 929
HpyCH4III	ACNGT	5 cut(s)	79, 332, 361, 428, 593
HpyCH4IV	ACGT	2 cut(s)	250, 869
HpyCH4V	TGCA	9 cut(s)	34, 191, 287, 357, 419, 547, 778, 843, 910
HpyF3I	CTNAG	2 cut(s)	44, 949
HpySE526I	ACGT	2 cut(s)	250, 869
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	8 cut(s)	20, 97, 170, 287, 357, 381, 770, 840
Ksp22I	TGATCA	1 cut(s)	763
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	61, 183, 520, 763
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	3 cut(s)	350, 441, 565
Lsp1109I	GCAGC	3 cut(s)	519, 769, 772
LweI	GCATC	2 cut(s)	284, 447
MaeI	CTAG	3 cut(s)	372, 384, 477
MaeII	ACGT	2 cut(s)	250, 869
MaeIII	GTNAC	2 cut(s)	89, 769
MalI	GATC	4 cut(s)	63, 185, 522, 765
MboI	GATC	4 cut(s)	61, 183, 520, 763
MboII	GAAGA	6 cut(s)	218, 272, 748, 808, 845, 979
MfeI	CAATTG	2 cut(s)	501, 617
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	9
MluCI	AATT	8 cut(s)	480, 492, 501, 548, 617, 690, 921, 997
MluNI	TGGCCA	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	8 cut(s)	134, 477, 522, 691, 898, 939, 955, 958
Mox20I	TGGCCA	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	9
MseI	TTAA	2 cut(s)	404, 483
MslI	CAYNNNNRTG	4 cut(s)	288, 362, 642, 645
Msp20I	TGGCCA	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	2 cut(s)	501, 617
MvaI	CCWGG	1 cut(s)	390
NdeII	GATC	4 cut(s)	61, 183, 520, 763
NlaIII	CATG	8 cut(s)	20, 97, 170, 287, 357, 381, 770, 840
NlaIV	GGNNCC	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	2 cut(s)	357, 840
OliI	CACNNNNGTG	1 cut(s)	362
PaeI	GCATGC	1 cut(s)	357
PciI	ACATGT	1 cut(s)	836
PciSI	GCTCTTC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	158, 791, 850
PkrI	GCNGC	3 cut(s)	534, 784, 787
PleI	GAGTC	1 cut(s)	28
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	251
PscI	ACATGT	1 cut(s)	836
PshBI	ATTAAT	1 cut(s)	483
PsiI	TTATAA	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	388
PspCI	CACGTG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	532
RsaI	GTAC	3 cut(s)	154, 228, 940
RsaNI	GTAC	3 cut(s)	153, 227, 939
RseI	CAYNNNNRTG	4 cut(s)	288, 362, 642, 645
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	404, 483
SatI	GCNGC	3 cut(s)	533, 783, 786
Sau3AI	GATC	4 cut(s)	61, 183, 520, 763
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	2 cut(s)	284, 447
SmiMI	CAYNNNNRTG	4 cut(s)	288, 362, 642, 645
SmlI	CTYRAG	2 cut(s)	674, 930
SmoI	CTYRAG	2 cut(s)	674, 930
SphI	GCATGC	1 cut(s)	357
Sse9I	AATT	8 cut(s)	480, 492, 501, 548, 617, 690, 921, 997
SsiI	CCGC	1 cut(s)	126
SspI	AATATT	2 cut(s)	212, 810
SspMI	CTAG	3 cut(s)	372, 384, 477
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	5 cut(s)	79, 332, 361, 428, 593
TaiI	ACGT	2 cut(s)	253, 872
TasI	AATT	8 cut(s)	480, 492, 501, 548, 617, 690, 921, 997
TfiI	GAWTC	3 cut(s)	158, 791, 850
Tru1I	TTAA	2 cut(s)	404, 483
Tru9I	TTAA	2 cut(s)	404, 483
TscAI	CASTG	3 cut(s)	41, 366, 433
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	3 cut(s)	532, 782, 785
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	5 cut(s)	273, 360, 366, 465, 522
TspRI	CASTG	3 cut(s)	41, 366, 433
VspI	ATTAAT	1 cut(s)	483
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	2 cut(s)	492, 690
XceI	RCATGY	2 cut(s)	357, 840
XmiI	GTMKAC	1 cut(s)	49
XspI	CTAG	3 cut(s)	372, 384, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.