Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001571

Physical Location & Seq

Genomic Coordinates Reverse (-)

11276229 .. 11279006

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09020.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCTTCCAGTGAGTATGATTCAGATATTGTTCAGTGGGGTCTTCGTCTTCTTGATGGGGATCCAGTTTATAATTCTTCATACTACTACGGCAGTGACATGATACAACAAGATGCTAATGATATCTACCATGATGAGTATATCAGGAGTCATTATGATACAGAATCAAACAATGTAGAAAATGATGAAATCATTGCACATACTCTTCAAGAAGAATATGCGCAACTATCTGTAACAGAAGCCTATGAATACTCGCATGTAGAAGAAGCACAGCCACAAGCTTCGTTTCATGCAGATGTGTGGCATGGTCAATCTACAAGAGATTTTTGCTCAGACCATGATTACAGGCAGGAAGAAGCTGCTATTGTGGTGCCTTCTAGCTTATGTTATAGCCCTGATGATCATTTGGAGCTAACTGATGAATGTTCTCTTGATGGGGAAGTAGGCTGGGGCTGGAATCCTGTTCCTCACATTCCTAGAATCAATGGAGAAATTCCTTCAATTGATGAAGCGACTTCAGACCATCAAAGGCTAGTTGACAGGCTTCAATTATATGGCTTCGTTGAACATAAGGTAGCAGGAGATGGCAACTGCCAGTTTCATGCTTTATCAGACCAATTGTATCAATCACCTGACAGCCACGAGTATGTGAGAAAGCAAGTTGTAAATCAGCTTAAGTCTCATCCGGAGATTTACGAGGGATATGTTCCTATGGCATATGAAGACTATTTGGAGAAGATGTCCAAGGATGGTGAGTGGGGTGACCATGTCTCATTACAGGCAGCTGCTGATTTGTATGGAGTGAAAATTTTTGTCCTGACTTCTTTTAAGGATAACTGTTGCATAGAGATTCTTCCTAATATTCAAACTTCAAAACAAGTTATTTATTTGAGTTTCTGGGCAGAGGTGCATTACAACTCAATTTATCCTCAAGGAGGCACAACCTCATATGAGAACAGAAAAAAGAAAAAATGGCGGATATTTGGGAATAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

333

Amino Acids

38.29

Weight (kDa)

4.61

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03330 AT5G03330 AT5G03330 AT5G03330
fragaria_vesca	FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161
malus_domestica	MD04G1095000.v1.1 MD12G1115200.v1.1
prunus_persica	Prupe.6G106600_v2.0.a1 Prupe.6G234300_v2.0.a1
pyrus_communis	pycom04g09020 pycom12g11450
rosa_chinensis	RchiOBHm_Chr3g0470011 RchiOBHm_Chr5g0058171
rosa_laevigata	RLG00000024304 RLG00000035200
rosa_multiflora	Rmu_sc0000367.1_g000036 Rmu_sc0009972.1_g000001 Rmu_sc0017440.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022390 Rroxscaffold_3G00230070 Rroxscaffold_3G00230090 Rroxscaffold_3G00239050 Rroxscaffold_6G00411280
rosa_rugosa	Rorug03G0106100 Rorug03G0106100 Rorug03G0106100 Rorug05G0312300 Rorug05G0312400
rosa_samantha	Rh3AG155200 Rh3BG179300 Rh3CG169900 Rh3DG195800 Rh5AG380300 Rh5BG391400 Rh5CG415300 Rh5DG406100
rosa_wichuraiana	Rw3G014620 Rw5G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
Acc16I	TGCGCA	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	370
AccIII	TCCGGA	1 cut(s)	685
AciI	CCGC	1 cut(s)	976
AclWI	GGATC	2 cut(s)	56, 69
AcsI	RAATTY	2 cut(s)	492, 807
AcuI	CTGAAG	1 cut(s)	501
AfiI	CCNNNNNNNGG	1 cut(s)	935
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	6 cut(s)	209, 501, 548, 566, 866, 873
AluBI	AGCT	6 cut(s)	281, 359, 381, 412, 673, 785
AluI	AGCT	6 cut(s)	281, 359, 381, 412, 673, 785
Alw26I	GTCTC	2 cut(s)	684, 775
AlwI	GGATC	2 cut(s)	56, 69
AlwNI	CAGNNNCTG	1 cut(s)	788
Aor13HI	TCCGGA	1 cut(s)	685
ApeKI	GCWGC	3 cut(s)	359, 782, 785
ApoI	RAATTY	2 cut(s)	492, 807
AspLEI	GCGC	1 cut(s)	223
AsuHPI	GGTGA	3 cut(s)	621, 764, 773
BamHI	GGATCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	370
BauI	CACGAG	1 cut(s)	641
BbsI	GAAGAC	3 cut(s)	35, 41, 729
BbvI	GCAGC	3 cut(s)	346, 772, 794
BccI	CCATC	5 cut(s)	50, 428, 531, 578, 743
BceAI	ACGGC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	684, 775
BfaI	CTAG	3 cut(s)	378, 477, 533
BfrI	CTTAAG	1 cut(s)	674
BisI	GCNGC	3 cut(s)	360, 783, 786
BlsI	GCNGC	3 cut(s)	361, 784, 787
BmiI	GGNNCC	2 cut(s)	63, 372
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	3 cut(s)	35, 41, 729
BpuEI	CTTGAG	1 cut(s)	915
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	744
BsaWI	WCCGGW	1 cut(s)	685
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	1 cut(s)	935
Bse1I	ACTGG	3 cut(s)	9, 65, 595
Bse3DI	GCAATG	1 cut(s)	192
Bse8I	GATNNNNATC	1 cut(s)	60
BseAI	TCCGGA	1 cut(s)	685
BseDI	CCNNGG	1 cut(s)	744
BseGI	GGATG	2 cut(s)	682, 754
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	935
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	3 cut(s)	9, 65, 595
BseXI	GCAGC	3 cut(s)	346, 772, 794
BseYI	CCCAGC	1 cut(s)	447
BshNI	GGYRCC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	686
BslI	CCNNNNNNNGG	1 cut(s)	935
BsmAI	GTCTC	2 cut(s)	684, 775
Bsp13I	TCCGGA	1 cut(s)	685
Bsp143I	GATC	2 cut(s)	61, 400
BspACI	CCGC	1 cut(s)	976
BspCNI	CTCAG	1 cut(s)	344
BspEI	TCCGGA	1 cut(s)	685
BspLI	GGNNCC	2 cut(s)	63, 372
BspPI	GGATC	2 cut(s)	56, 69
BspT107I	GGYRCC	1 cut(s)	370
BspTI	CTTAAG	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	3 cut(s)	9, 65, 595
BssECI	CCNNGG	1 cut(s)	744
BssMI	GATC	2 cut(s)	61, 400
BssSI	CACGAG	1 cut(s)	641
BssT1I	CCWWGG	1 cut(s)	744
Bst2BI	CACGAG	1 cut(s)	641
Bst4CI	ACNGT	1 cut(s)	839
Bst6I	CTCTTC	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	674
BstDEI	CTNAG	1 cut(s)	331
BstEII	GGTNACC	1 cut(s)	761
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	2 cut(s)	682, 754
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	64, 403
BstMAI	GTCTC	2 cut(s)	684, 775
BstMBI	GATC	2 cut(s)	61, 400
BstNSI	RCATGY	1 cut(s)	260
BstPI	GGTNACC	1 cut(s)	761
BstV1I	GCAGC	3 cut(s)	346, 772, 794
BstV2I	GAAGAC	3 cut(s)	35, 41, 729
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	682, 754
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	3 cut(s)	16, 41, 100
CaiI	CAGNNNCTG	1 cut(s)	788
CfoI	GCGC	1 cut(s)	223
CviAII	CATG	8 cut(s)	100, 131, 257, 290, 305, 338, 602, 767
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	2 cut(s)	63, 402
DpnII	GATC	2 cut(s)	61, 400
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	991
Eco130I	CCWWGG	1 cut(s)	744
Eco32I	GATATC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	501
Eco91I	GGTNACC	1 cut(s)	761
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoO65I	GGTNACC	1 cut(s)	761
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	8 cut(s)	103, 134, 260, 293, 308, 341, 605, 770
FatI	CATG	8 cut(s)	99, 130, 256, 289, 304, 337, 601, 766
FauNDI	CATATG	2 cut(s)	718, 949
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	3 cut(s)	360, 783, 786
FokI	GGATG	2 cut(s)	669, 761
Fsp4HI	GCNGC	3 cut(s)	360, 783, 786
FspBI	CTAG	3 cut(s)	378, 477, 533
FspI	TGCGCA	1 cut(s)	222
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	3 cut(s)	360, 783, 786
GsaI	CCCAGC	1 cut(s)	451
HapII	CCGG	1 cut(s)	686
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	8 cut(s)	103, 134, 260, 293, 308, 341, 605, 770
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	6 cut(s)	20, 148, 164, 457, 480, 850
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	3 cut(s)	621, 764, 773
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	4 cut(s)	25, 334, 520, 613
Hpy188III	TCNNGA	6 cut(s)	53, 145, 209, 431, 686, 817
Hpy8I	GTNNAC	1 cut(s)	538
HpyAV	CCTTC	2 cut(s)	384, 507
HpyCH4III	ACNGT	1 cut(s)	839
HpyCH4V	TGCA	4 cut(s)	197, 293, 843, 910
HpyF3I	CTNAG	1 cut(s)	331
Hsp92II	CATG	8 cut(s)	103, 134, 260, 293, 308, 341, 605, 770
HspAI	GCGC	1 cut(s)	221
Kpn2I	TCCGGA	1 cut(s)	685
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	61, 400
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	3 cut(s)	346, 772, 794
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	3 cut(s)	378, 477, 533
MaeIII	GTNAC	3 cut(s)	95, 232, 761
MalI	GATC	2 cut(s)	63, 402
MboI	GATC	2 cut(s)	61, 400
MfeI	CAATTG	2 cut(s)	501, 617
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	7 cut(s)	73, 492, 501, 548, 617, 807, 921
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	6 cut(s)	477, 691, 898, 929, 939, 955
MroI	TCCGGA	1 cut(s)	685
MseI	TTAA	2 cut(s)	675, 828
MslI	CAYNNNNRTG	2 cut(s)	294, 645
MspA1I	CMGCKG	1 cut(s)	785
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	1 cut(s)	686
MunI	CAATTG	2 cut(s)	501, 617
NdeI	CATATG	2 cut(s)	718, 949
NdeII	GATC	2 cut(s)	61, 400
NlaIII	CATG	8 cut(s)	103, 134, 260, 293, 308, 341, 605, 770
NlaIV	GGNNCC	2 cut(s)	63, 372
NmuCI	GTSAC	2 cut(s)	95, 761
NsbI	TGCGCA	1 cut(s)	222
NspI	RCATGY	1 cut(s)	260
PfeI	GAWTC	5 cut(s)	20, 164, 457, 480, 850
PflFI	GACNNNGTC	1 cut(s)	767
PkrI	GCNGC	3 cut(s)	361, 784, 787
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PsiI	TTATAA	1 cut(s)	72
PspEI	GGTNACC	1 cut(s)	761
PspFI	CCCAGC	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	63, 372
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	785
RseI	CAYNNNNRTG	2 cut(s)	294, 645
SaqAI	TTAA	2 cut(s)	675, 828
SatI	GCNGC	3 cut(s)	360, 783, 786
Sau3AI	GATC	2 cut(s)	61, 400
SchI	GAGTC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	103
SmiMI	CAYNNNNRTG	2 cut(s)	294, 645
SmlI	CTYRAG	2 cut(s)	674, 930
SmoI	CTYRAG	2 cut(s)	674, 930
Sse9I	AATT	7 cut(s)	73, 492, 501, 548, 617, 807, 921
SsiI	CCGC	1 cut(s)	976
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	3 cut(s)	378, 477, 533
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	1 cut(s)	839
TasI	AATT	7 cut(s)	73, 492, 501, 548, 617, 807, 921
TfiI	GAWTC	5 cut(s)	20, 164, 457, 480, 850
Tru1I	TTAA	2 cut(s)	675, 828
Tru9I	TTAA	2 cut(s)	675, 828
TscAI	CASTG	3 cut(s)	16, 41, 100
TseFI	GTSAC	2 cut(s)	95, 761
TseI	GCWGC	3 cut(s)	359, 782, 785
Tsp45I	GTSAC	2 cut(s)	95, 761
TspDTI	ATGAA	8 cut(s)	69, 201, 261, 278, 435, 522, 590, 735
TspRI	CASTG	3 cut(s)	16, 41, 100
Tth111I	GACNNNGTC	1 cut(s)	767
Vha464I	CTTAAG	1 cut(s)	674
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	2 cut(s)	492, 807
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	3 cut(s)	378, 477, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.