Rh5CG415300

OTU-like cysteine protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001571
Physical Location & Seq
Reverse (-)
56358469 .. 56361939
3471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG415300.1

Sequence Viewer

Length: 957 bp
ATGCTTACATACGAGCAAGACCCGGATGTTGTTCGCTGGGGACTCCAGCTCTTTGAAGGTGATCCGTATTCGAATTGTGGGTATTGTGACTCAGTTAACCAAGATGGCACTAATTATTATGCGGGGCATTATTTTAAGGAAGATGTGGTGTATGATGCGGATTGTATAAATGTGGAATATGATGAACTTATTGCTCATGCTCTTCAAGAAGAGCTGTCACTACTTGATATAGAGGAGGACGAGCCGGGATCTGCGCCTGAGCAAGTAGAGCATTTGCAAGCATCTGTCTTCCCACAAGATTGGTCACAGCAATCTATTGGAAATTATGGCTCTGGACAGGAGAGTGTTCAGGCAGAGGCAGATGAAGTTGGGCCTTCTACTTCTACTTCGTGTTCTAGCCCAGATGAAAAGGCGTACTATGGAGATGAGTGGTCATATTCCCTAGAGCTGGCTAATGAATATACATTTGATGGAGACAGGTTGAACCAGATGGTTCCTGTCCCTCATGTTCCTAAAATTAATGGTGATATACCCTCGCTAGATCAAGCAACTTTAGATCACCAAAGGCTTCTGGACAGGTTGCAGTTATATGGGTTGGTTGAAAATAAGGTCCAAGGAGATGGAAACTGTCAGTTCCGCGCTCTAGCTGACCAATTTTATCAATCTCCTGAACACCATGAATTTGTGAGACAACAAATTGTAAATCAGCTCAAGTCATACCCAGAGATATATGAAGGATATGTTCCCATGGCTTATGATGACTATTTGGAGAAGATGTCCAGGAGCGGTGAGTGGGGCGATCATGTTACTTTACAGGCTGCTGCAGATTTGTATGGAGTTAAAATTTTTGTCATAACATCTTTCAAGGACACCTGCTACATTGAGATTCTTCCTAATGCTGAAAGATCGAAACGAGGTACTTTTATTCTGCTCAATCTGCTGGACTTTGTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

318

Amino Acids

36.18

Weight (kDa)

4.17

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 205 - 291 2.3e-10 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 881
Acc36I ACCTGC 1 cut(s) 881
AccBSI CCGCTC 1 cut(s) 786
AccII CGCG 1 cut(s) 639
AciI CCGC 4 cut(s) 122, 158, 637, 786
AclWI GGATC 2 cut(s) 56, 256
AcsI RAATTY 2 cut(s) 680, 843
AfaI GTAC 2 cut(s) 416, 919
AfiI CCNNNNNNNGG 1 cut(s) 448
AgsI TTSAA 5 cut(s) 56, 206, 484, 602, 865
AjnI CCWGG 1 cut(s) 779
AluBI AGCT 5 cut(s) 49, 214, 448, 647, 709
AluI AGCT 5 cut(s) 49, 214, 448, 647, 709
Alw26I GTCTC 2 cut(s) 468, 682
AlwI GGATC 2 cut(s) 56, 256
AoxI GGCC 1 cut(s) 371
ApeKI GCWGC 2 cut(s) 818, 821
ApoI RAATTY 2 cut(s) 680, 843
AseI ATTAAT 1 cut(s) 519
AspLEI GCGC 2 cut(s) 256, 641
AspS9I GGNCC 2 cut(s) 371, 610
AsuC2I CCSGG 2 cut(s) 23, 246
AsuHPI GGTGA 4 cut(s) 71, 536, 551, 800
AsuII TTCGAA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 610
BbsI GAAGAC 1 cut(s) 280
BbvI GCAGC 2 cut(s) 805, 808
BccI CCATC 4 cut(s) 98, 464, 484, 614
BciT130I CCWGG 1 cut(s) 781
BcnI CCSGG 2 cut(s) 23, 246
BcoDI GTCTC 2 cut(s) 468, 682
BfaI CTAG 4 cut(s) 396, 443, 539, 644
BfmI CTRYAG 1 cut(s) 822
BfuAI ACCTGC 1 cut(s) 881
BisI GCNGC 2 cut(s) 819, 822
BlsI GCNGC 2 cut(s) 820, 823
Bme1390I CCNGG 3 cut(s) 23, 246, 781
Bme18I GGWCC 1 cut(s) 610
BmgT120I GGNCC 2 cut(s) 371, 610
BmiI GGNNCC 1 cut(s) 495
BmrFI CCNGG 3 cut(s) 23, 246, 781
BmsI GCATC 2 cut(s) 145, 290
BpiI GAAGAC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 695
BpuMI CCSGG 2 cut(s) 23, 246
BsaJI CCNNGG 2 cut(s) 613, 747
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 1 cut(s) 448
BseBI CCWGG 1 cut(s) 781
BseDI CCNNGG 2 cut(s) 613, 747
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMII CTCAG 2 cut(s) 105, 249
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 805, 808
BseYI CCCAGC 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 639
BshFI GGCC 1 cut(s) 373
BsiSI CCGG 2 cut(s) 23, 245
BslFI GGGAC 2 cut(s) 54, 485
BslI CCNNNNNNNGG 1 cut(s) 448
BsmAI GTCTC 2 cut(s) 468, 682
BsmFI GGGAC 2 cut(s) 54, 485
BsnI GGCC 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 71
Bsp143I GATC 6 cut(s) 61, 248, 541, 556, 799, 905
Bsp19I CCATGG 1 cut(s) 747
BspACI CCGC 4 cut(s) 122, 158, 637, 786
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 2 cut(s) 104, 250
BspFNI CGCG 1 cut(s) 639
BspLI GGNNCC 1 cut(s) 495
BspMAI CTGCAG 1 cut(s) 826
BspMI ACCTGC 1 cut(s) 881
BspPI GGATC 2 cut(s) 56, 256
BspQI GCTCTTC 2 cut(s) 204, 207
BspT104I TTCGAA 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 786
BssECI CCNNGG 2 cut(s) 613, 747
BssMI GATC 6 cut(s) 61, 248, 541, 556, 799, 905
BssT1I CCWWGG 2 cut(s) 613, 747
Bst2UI CCWGG 1 cut(s) 781
Bst4CI ACNGT 1 cut(s) 629
Bst6I CTCTTC 2 cut(s) 204, 207
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 279, 450
BstDEI CTNAG 2 cut(s) 91, 258
BstDSI CCRYGG 1 cut(s) 747
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 639
BstHHI GCGC 2 cut(s) 256, 641
BstKTI GATC 6 cut(s) 64, 251, 544, 559, 802, 908
BstMAI GTCTC 2 cut(s) 468, 682
BstMBI GATC 6 cut(s) 61, 248, 541, 556, 799, 905
BstMWI GCNNNNNNNGC 2 cut(s) 268, 937
BstNI CCWGG 1 cut(s) 781
BstSCI CCNGG 3 cut(s) 21, 244, 779
BstSFI CTRYAG 1 cut(s) 822
BstUI CGCG 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 805, 808
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 2 cut(s) 300, 620
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 747
BtsCI GGATG 1 cut(s) 31
BveI ACCTGC 1 cut(s) 881
Cac8I GCNNGC 2 cut(s) 279, 450
CfoI GCGC 2 cut(s) 256, 641
Cfr13I GGNCC 2 cut(s) 371, 610
Csp6I GTAC 2 cut(s) 415, 918
CviAII CATG 5 cut(s) 197, 506, 677, 748, 803
CviQI GTAC 2 cut(s) 415, 918
DdeI CTNAG 2 cut(s) 91, 258
DpnI GATC 6 cut(s) 63, 250, 543, 558, 801, 907
DpnII GATC 6 cut(s) 61, 248, 541, 556, 799, 905
Eam1104I CTCTTC 2 cut(s) 204, 207
EarI CTCTTC 2 cut(s) 204, 207
Eco130I CCWWGG 2 cut(s) 613, 747
Eco47I GGWCC 1 cut(s) 610
EcoRII CCWGG 1 cut(s) 779
EcoT14I CCWWGG 2 cut(s) 613, 747
ErhI CCWWGG 2 cut(s) 613, 747
FaeI CATG 5 cut(s) 200, 509, 680, 751, 806
FaqI GGGAC 2 cut(s) 54, 485
FatI CATG 5 cut(s) 196, 505, 676, 747, 802
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 819, 822
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 819, 822
FspBI CTAG 4 cut(s) 396, 443, 539, 644
GlaI GCGC 2 cut(s) 255, 640
GluI GCNGC 2 cut(s) 819, 822
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 373
HapII CCGG 2 cut(s) 23, 245
HhaI GCGC 2 cut(s) 256, 641
Hin1II CATG 5 cut(s) 200, 509, 680, 751, 806
Hin6I GCGC 2 cut(s) 254, 639
HinP1I GCGC 2 cut(s) 254, 639
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 3 cut(s) 42, 89, 886
HpaI GTTAAC 1 cut(s) 97
HpaII CCGG 2 cut(s) 23, 245
HphI GGTGA 4 cut(s) 71, 536, 551, 800
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 4 cut(s) 206, 333, 572, 668
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 50, 384, 728
HpyCH4III ACNGT 1 cut(s) 629
HpyCH4V TGCA 3 cut(s) 277, 583, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 268, 937
HpyF3I CTNAG 2 cut(s) 91, 258
Hsp92II CATG 5 cut(s) 200, 509, 680, 751, 806
HspAI GCGC 2 cut(s) 254, 639
KspAI GTTAAC 1 cut(s) 97
Kzo9I GATC 6 cut(s) 61, 248, 541, 556, 799, 905
LguI GCTCTTC 2 cut(s) 204, 207
LmnI GCTCC 1 cut(s) 783
Lsp1109I GCAGC 2 cut(s) 805, 808
LweI GCATC 2 cut(s) 145, 290
MaeI CTAG 4 cut(s) 396, 443, 539, 644
MaeIII GTNAC 4 cut(s) 86, 216, 303, 805
MalI GATC 6 cut(s) 63, 250, 543, 558, 801, 907
MbiI CCGCTC 1 cut(s) 786
MboI GATC 6 cut(s) 61, 248, 541, 556, 799, 905
MboII GAAGA 6 cut(s) 152, 194, 221, 280, 784, 881
MflI RGATCY 1 cut(s) 248
MluCI AATT 8 cut(s) 73, 112, 322, 516, 653, 680, 696, 843
MlyI GAGTC 2 cut(s) 36, 83
MnlI CCTC 6 cut(s) 226, 229, 349, 513, 544, 908
MseI TTAA 5 cut(s) 96, 135, 519, 840, 955
MspI CCGG 2 cut(s) 23, 245
MspR9I CCNGG 3 cut(s) 23, 246, 781
MvaI CCWGG 1 cut(s) 781
MvnI CGCG 1 cut(s) 639
MwoI GCNNNNNNNGC 2 cut(s) 268, 937
NciI CCSGG 2 cut(s) 23, 246
NcoI CCATGG 1 cut(s) 747
NdeII GATC 6 cut(s) 61, 248, 541, 556, 799, 905
NlaIII CATG 5 cut(s) 200, 509, 680, 751, 806
NlaIV GGNNCC 1 cut(s) 495
NmuCI GTSAC 3 cut(s) 86, 216, 303
NspV TTCGAA 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 881
PciSI GCTCTTC 2 cut(s) 204, 207
PfeI GAWTC 1 cut(s) 886
PflFI GACNNNGTC 1 cut(s) 947
PfoI TCCNGGA 1 cut(s) 779
PkrI GCNGC 2 cut(s) 820, 823
PleI GAGTC 2 cut(s) 36, 83
PpsI GAGTC 2 cut(s) 36, 83
PshBI ATTAAT 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 779
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 779
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 2 cut(s) 371, 610
PstI CTGCAG 1 cut(s) 826
PsuI RGATCY 1 cut(s) 248
PsyI GACNNNGTC 1 cut(s) 947
RsaI GTAC 2 cut(s) 416, 919
RsaNI GTAC 2 cut(s) 415, 918
SapI GCTCTTC 2 cut(s) 204, 207
SaqAI TTAA 5 cut(s) 96, 135, 519, 840, 955
SatI GCNGC 2 cut(s) 819, 822
Sau3AI GATC 6 cut(s) 61, 248, 541, 556, 799, 905
Sau96I GGNCC 2 cut(s) 371, 610
SchI GAGTC 2 cut(s) 36, 83
ScrFI CCNGG 3 cut(s) 23, 246, 781
SfaNI GCATC 2 cut(s) 145, 290
SfcI CTRYAG 1 cut(s) 822
SfuI TTCGAA 1 cut(s) 71
SinI GGWCC 1 cut(s) 610
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
Sse9I AATT 8 cut(s) 73, 112, 322, 516, 653, 680, 696, 843
SsiI CCGC 4 cut(s) 122, 158, 637, 786
SspMI CTAG 4 cut(s) 396, 443, 539, 644
StyD4I CCNGG 3 cut(s) 21, 244, 779
StyI CCWWGG 2 cut(s) 613, 747
TaaI ACNGT 1 cut(s) 629
TaqI TCGA 2 cut(s) 71, 908
TasI AATT 8 cut(s) 73, 112, 322, 516, 653, 680, 696, 843
TfiI GAWTC 1 cut(s) 886
Tru1I TTAA 5 cut(s) 96, 135, 519, 840, 955
Tru9I TTAA 5 cut(s) 96, 135, 519, 840, 955
TseFI GTSAC 3 cut(s) 86, 216, 303
TseI GCWGC 2 cut(s) 818, 821
Tsp45I GTSAC 3 cut(s) 86, 216, 303
TspDTI ATGAA 6 cut(s) 198, 378, 420, 471, 693, 747
TspGWI ACGGA 1 cut(s) 54
Tth111I GACNNNGTC 1 cut(s) 947
VpaK11BI GGWCC 1 cut(s) 610
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 2 cut(s) 680, 843
XspI CTAG 4 cut(s) 396, 443, 539, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.