Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001571

Physical Location & Seq

Genomic Coordinates Reverse (-)

62243174 .. 62249669

Gene Structure 6496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCTTACATACGAGCAAGACCCGGATGTTGTTCGCTGGGGACTCCAGCTCTTTGAAGGTGATCCGTATTCGAATTGTGGGTATTGTGACTCAGTTAACCAAGATGGCACTAATTATTATGCGGGGCATTATTTTAAGCAAGATGTGGTGTATGATGCGGATTGTATAAATGTGGAATATGATGAACTTATTGCTCATGCTCTTCAAGAAGAGCTGTCACTACTTGATATAGAGGAGGACGAGCCGGGATCTGCGCCTCAGCAAGTAGAGCATTTGCAAGCATCTGTCTTCCCACAAGATTGGTCACAGCAATCTGTTGGAAATTATGGCTCTGGACAGGAGAGTGTTCAGGCAGAGGCAGATGAAGTTGGGCCTTCTACTTCGTGTTCTAGCCCAGATGAAAAGTCGTACTATGGAGATGAGTGGTCATATTCCCTAGAGCTGGCTAATGAATATACATTTGATGGAGAGAGGTTGAACCAGATGGTTCCTGTCCCTCATGTTCCTAAAATTAATGGTGATATACCCTCGCTAGATCAAGCAACTTTAGATCACCAAAGGCTTCTGGACAGGTTGCAGTTATATGGGTTGGTTGAAAATAAGGTCCAAGGAGATGGAAACTGTCAGTTCCGCGCTCTAGCTGACCAATTTTATCAATCTCCTGAACACCACGAATTTGTGAGACAACAAATTGTAAATCAGCTCAAGTCATACCCAGAGATATATGAAGGATATGTTCCCATGGCTTATAATGACTATTTGGAGAAGATGTCCAGGAGCGGTGAGTGGGGCGATCATGTTACTTTACAGGCTGCTGCAGATTTGTATGGAGTTAAAATTTTTGTCATAACATCTTTCAAGGACACCTGCTACATTGAGATTCTTCCTAATGCTGAAAGATCGAAACGAGTAATTTGTTTGAGCTTTTGGGCAGAGGTGCACTACAACTCAATTTATTCTGAAGGAGATTTGCCTACATTTGAGACGAAGAAGAAGAAGAAAAGGGGGATGTCACGTAATAAGCACTTGGAGTCCCCAAATAAATACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

350

Amino Acids

40.09

Weight (kDa)

4.51

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTU	PF02338	203 - 309	9.9e-11	OTU-like cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03330 AT5G03330 AT5G03330 AT5G03330
fragaria_vesca	FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161
malus_domestica	MD04G1095000.v1.1 MD12G1115200.v1.1
prunus_persica	Prupe.6G106600_v2.0.a1 Prupe.6G234300_v2.0.a1
pyrus_communis	pycom04g09020 pycom12g11450
rosa_chinensis	RchiOBHm_Chr3g0470011 RchiOBHm_Chr5g0058171
rosa_laevigata	RLG00000024304 RLG00000035200
rosa_multiflora	Rmu_sc0000367.1_g000036 Rmu_sc0009972.1_g000001 Rmu_sc0017440.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022390 Rroxscaffold_3G00230070 Rroxscaffold_3G00230090 Rroxscaffold_3G00239050 Rroxscaffold_6G00411280
rosa_rugosa	Rorug03G0106100 Rorug03G0106100 Rorug03G0106100 Rorug05G0312300 Rorug05G0312400
rosa_samantha	Rh3AG155200 Rh3BG179300 Rh3CG169900 Rh3DG195800 Rh5AG380300 Rh5BG391400 Rh5CG415300 Rh5DG406100
rosa_wichuraiana	Rw3G014620 Rw5G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AarI	CACCTGC	1 cut(s)	875
Acc36I	ACCTGC	1 cut(s)	875
AccBSI	CCGCTC	1 cut(s)	780
AccII	CGCG	1 cut(s)	633
AciI	CCGC	4 cut(s)	122, 158, 631, 780
AclWI	GGATC	2 cut(s)	56, 256
AcsI	RAATTY	2 cut(s)	674, 837
AcuI	CTGAAG	1 cut(s)	981
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	5 cut(s)	56, 206, 478, 596, 859
AjnI	CCWGG	1 cut(s)	773
AluBI	AGCT	6 cut(s)	49, 214, 442, 641, 703, 924
AluI	AGCT	6 cut(s)	49, 214, 442, 641, 703, 924
Alw21I	GWGCWC	1 cut(s)	942
Alw26I	GTCTC	2 cut(s)	676, 977
Alw44I	GTGCAC	1 cut(s)	938
AlwI	GGATC	2 cut(s)	56, 256
AoxI	GGCC	1 cut(s)	371
ApaLI	GTGCAC	1 cut(s)	938
ApeKI	GCWGC	2 cut(s)	812, 815
ApoI	RAATTY	2 cut(s)	674, 837
AseI	ATTAAT	1 cut(s)	513
AspLEI	GCGC	2 cut(s)	256, 635
AspS9I	GGNCC	2 cut(s)	371, 604
AsuC2I	CCSGG	2 cut(s)	23, 246
AsuHPI	GGTGA	4 cut(s)	71, 530, 545, 794
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	604
BaeGI	GKGCMC	1 cut(s)	942
BbsI	GAAGAC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	942
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	799, 802
BccI	CCATC	4 cut(s)	98, 458, 478, 608
BciT130I	CCWGG	1 cut(s)	775
BcnI	CCSGG	2 cut(s)	23, 246
BcoDI	GTCTC	2 cut(s)	676, 977
BfaI	CTAG	4 cut(s)	390, 437, 533, 638
BfmI	CTRYAG	1 cut(s)	816
BfuAI	ACCTGC	1 cut(s)	875
BisI	GCNGC	2 cut(s)	813, 816
BlsI	GCNGC	2 cut(s)	814, 817
Bme1390I	CCNGG	3 cut(s)	23, 246, 775
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	2 cut(s)	371, 604
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	3 cut(s)	23, 246, 775
BmsI	GCATC	2 cut(s)	145, 290
BpiI	GAAGAC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	2 cut(s)	23, 246
BsaAI	YACGTR	1 cut(s)	1016
BsaJI	CCNNGG	2 cut(s)	607, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	755, 785
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	775
BseDI	CCNNGG	2 cut(s)	607, 741
BseGI	GGATG	2 cut(s)	31, 1014
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	105, 272
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	942
BseXI	GCAGC	2 cut(s)	799, 802
BseYI	CCCAGC	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	942
BsiSI	CCGG	2 cut(s)	23, 245
BslFI	GGGAC	3 cut(s)	54, 479, 1018
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	2 cut(s)	676, 977
BsmBI	CGTCTC	1 cut(s)	977
BsmFI	GGGAC	3 cut(s)	54, 479, 1018
BsnI	GGCC	1 cut(s)	373
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp143I	GATC	6 cut(s)	61, 248, 535, 550, 793, 899
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	4 cut(s)	122, 158, 631, 780
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	2 cut(s)	104, 271
BspFNI	CGCG	1 cut(s)	633
BspLI	GGNNCC	1 cut(s)	489
BspMAI	CTGCAG	1 cut(s)	820
BspMI	ACCTGC	1 cut(s)	875
BspPI	GGATC	2 cut(s)	56, 256
BspQI	GCTCTTC	2 cut(s)	204, 207
BspT104I	TTCGAA	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	780
BssECI	CCNNGG	2 cut(s)	607, 741
BssMI	GATC	6 cut(s)	61, 248, 535, 550, 793, 899
BssT1I	CCWWGG	2 cut(s)	607, 741
Bst2UI	CCWGG	1 cut(s)	775
Bst4CI	ACNGT	1 cut(s)	623
Bst6I	CTCTTC	2 cut(s)	204, 207
BstBAI	YACGTR	1 cut(s)	1016
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	279, 444
BstDEI	CTNAG	2 cut(s)	91, 258
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	2 cut(s)	31, 1014
BstFNI	CGCG	1 cut(s)	633
BstHHI	GCGC	2 cut(s)	256, 635
BstKTI	GATC	6 cut(s)	64, 251, 538, 553, 796, 902
BstMAI	GTCTC	2 cut(s)	676, 977
BstMBI	GATC	6 cut(s)	61, 248, 535, 550, 793, 899
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	775
BstSCI	CCNGG	3 cut(s)	21, 244, 773
BstSFI	CTRYAG	1 cut(s)	816
BstSLI	GKGCMC	1 cut(s)	942
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	2 cut(s)	799, 802
BstV2I	GAAGAC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	248
BstXI	CCANNNNNNTGG	2 cut(s)	300, 614
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	741
BtsCI	GGATG	2 cut(s)	31, 1014
BveI	ACCTGC	1 cut(s)	875
Cac8I	GCNNGC	2 cut(s)	279, 444
CfoI	GCGC	2 cut(s)	256, 635
Cfr13I	GGNCC	2 cut(s)	371, 604
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	4 cut(s)	197, 500, 742, 797
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	91, 258
DpnI	GATC	6 cut(s)	63, 250, 537, 552, 795, 901
DpnII	GATC	6 cut(s)	61, 248, 535, 550, 793, 899
Eam1104I	CTCTTC	2 cut(s)	204, 207
EarI	CTCTTC	2 cut(s)	204, 207
Eco130I	CCWWGG	2 cut(s)	607, 741
Eco47I	GGWCC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	981
EcoRII	CCWGG	1 cut(s)	773
EcoT14I	CCWWGG	2 cut(s)	607, 741
ErhI	CCWWGG	2 cut(s)	607, 741
Esp3I	CGTCTC	1 cut(s)	977
FaeI	CATG	4 cut(s)	200, 503, 745, 800
FaqI	GGGAC	3 cut(s)	54, 479, 1018
FatI	CATG	4 cut(s)	196, 499, 741, 796
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	813, 816
FokI	GGATG	2 cut(s)	38, 1021
Fsp4HI	GCNGC	2 cut(s)	813, 816
FspBI	CTAG	4 cut(s)	390, 437, 533, 638
GlaI	GCGC	2 cut(s)	255, 634
GluI	GCNGC	2 cut(s)	813, 816
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	373
HapII	CCGG	2 cut(s)	23, 245
HhaI	GCGC	2 cut(s)	256, 635
Hin1II	CATG	4 cut(s)	200, 503, 745, 800
Hin6I	GCGC	2 cut(s)	254, 633
HinP1I	GCGC	2 cut(s)	254, 633
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	4 cut(s)	42, 89, 880, 1031
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	2 cut(s)	23, 245
HphI	GGTGA	4 cut(s)	71, 530, 545, 794
Hpy166II	GTNNAC	2 cut(s)	97, 940
Hpy188I	TCNGA	1 cut(s)	961
Hpy188III	TCNNGA	4 cut(s)	206, 333, 566, 662
Hpy8I	GTNNAC	2 cut(s)	97, 940
HpyAV	CCTTC	4 cut(s)	50, 384, 722, 956
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4IV	ACGT	1 cut(s)	1015
HpyCH4V	TGCA	4 cut(s)	277, 577, 818, 940
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	2 cut(s)	91, 258
HpySE526I	ACGT	1 cut(s)	1015
Hsp92II	CATG	4 cut(s)	200, 503, 745, 800
HspAI	GCGC	2 cut(s)	254, 633
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	6 cut(s)	61, 248, 535, 550, 793, 899
LguI	GCTCTTC	2 cut(s)	204, 207
LmnI	GCTCC	1 cut(s)	777
Lsp1109I	GCAGC	2 cut(s)	799, 802
LweI	GCATC	2 cut(s)	145, 290
MaeI	CTAG	4 cut(s)	390, 437, 533, 638
MaeII	ACGT	1 cut(s)	1015
MaeIII	GTNAC	5 cut(s)	86, 216, 303, 799, 1011
MalI	GATC	6 cut(s)	63, 250, 537, 552, 795, 901
MbiI	CCGCTC	1 cut(s)	780
MboI	GATC	6 cut(s)	61, 248, 535, 550, 793, 899
MboII	GAAGA	9 cut(s)	194, 221, 280, 778, 875, 1000, 1003, 1006, 1009
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	942
MlyI	GAGTC	3 cut(s)	36, 83, 1040
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	8 cut(s)	226, 229, 267, 349, 465, 507, 538, 928
MseI	TTAA	4 cut(s)	96, 135, 513, 834
MspI	CCGG	2 cut(s)	23, 245
MspR9I	CCNGG	3 cut(s)	23, 246, 775
MvaI	CCWGG	1 cut(s)	775
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	268
NciI	CCSGG	2 cut(s)	23, 246
NcoI	CCATGG	1 cut(s)	741
NdeII	GATC	6 cut(s)	61, 248, 535, 550, 793, 899
NlaIII	CATG	4 cut(s)	200, 503, 745, 800
NlaIV	GGNNCC	1 cut(s)	489
NmuCI	GTSAC	4 cut(s)	86, 216, 303, 1011
NspV	TTCGAA	1 cut(s)	71
PaqCI	CACCTGC	1 cut(s)	875
PciSI	GCTCTTC	2 cut(s)	204, 207
PfeI	GAWTC	1 cut(s)	880
PfoI	TCCNGGA	1 cut(s)	773
PkrI	GCNGC	2 cut(s)	814, 817
PleI	GAGTC	3 cut(s)	36, 83, 1039
PpsI	GAGTC	3 cut(s)	36, 83, 1039
Ppu21I	YACGTR	1 cut(s)	1016
PshBI	ATTAAT	1 cut(s)	513
PsiI	TTATAA	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	773
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	773
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	2 cut(s)	371, 604
PstI	CTGCAG	1 cut(s)	820
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SapI	GCTCTTC	2 cut(s)	204, 207
SaqAI	TTAA	4 cut(s)	96, 135, 513, 834
SatI	GCNGC	2 cut(s)	813, 816
Sau3AI	GATC	6 cut(s)	61, 248, 535, 550, 793, 899
Sau96I	GGNCC	2 cut(s)	371, 604
SchI	GAGTC	3 cut(s)	36, 83, 1040
ScrFI	CCNGG	3 cut(s)	23, 246, 775
SduI	GDGCHC	1 cut(s)	942
SfaNI	GCATC	2 cut(s)	145, 290
SfcI	CTRYAG	1 cut(s)	816
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	604
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
SsiI	CCGC	4 cut(s)	122, 158, 631, 780
SspMI	CTAG	4 cut(s)	390, 437, 533, 638
StyD4I	CCNGG	3 cut(s)	21, 244, 773
StyI	CCWWGG	2 cut(s)	607, 741
TaaI	ACNGT	1 cut(s)	623
TaiI	ACGT	1 cut(s)	1018
TaqI	TCGA	2 cut(s)	71, 902
TfiI	GAWTC	1 cut(s)	880
Tru1I	TTAA	4 cut(s)	96, 135, 513, 834
Tru9I	TTAA	4 cut(s)	96, 135, 513, 834
TseFI	GTSAC	4 cut(s)	86, 216, 303, 1011
TseI	GCWGC	2 cut(s)	812, 815
Tsp45I	GTSAC	4 cut(s)	86, 216, 303, 1011
TspDTI	ATGAA	5 cut(s)	198, 378, 414, 465, 741
TspGWI	ACGGA	1 cut(s)	54
VneI	GTGCAC	1 cut(s)	938
VpaK11BI	GGWCC	1 cut(s)	604
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	2 cut(s)	674, 837
XspI	CTAG	4 cut(s)	390, 437, 533, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.