Rmu_sc0017440.1_g000007

OTU-like cysteine protease

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017440.1
Physical Location & Seq
Reverse (-)
27386 .. 30497
3112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017440.1_g000007.1.cds

Sequence Viewer

Length: 1338 bp
atggctggccaagagcatgagtctggtattatgcagtgggctcttagtctacttgatggcgatccaggttataatactgtctataatggtgacatgatacaacacgatgctaatgacatctaccacggacaatattttagaggtcaatatggtactgaatctaaccatgtagagaatgatgagatcattgcacacacacttcaagaagaatattcacgactatctgtagcagaagcctctcgatactcacatggagatgaagagcaatcacaagcatctacttatgcagatgattggtatagtttgtccagaaggaactattgttcagacagtgattatccaaatgaaggagcatgcacagtggtgccttctagttcatgttctagcccaggccgtttggagttaactgatgagtgtgcagttgacggtgaagtaggctggagcttcaatgaaatgatgcccgttcctgcccgatcaagggcggatgtccgcactatcgctaaagtgcggacgtcgactgagcaagcggcttctaggcggcgcagggcttgcaggagggaggccggaggcctcccggaccgttctaggcaccgttcgaggtcggaggtcaggcttgccggtttctgggcagccacctcacctgcaactgcaggttctgtgcagcaccgcaaaacccgtcgccggccactccacccgatcgcagacccctggcctccttctggcaagccgcgccgctccgtcgccgctcgatcgaggccggagcagcgacgtccgcactttttctgggttgcagacgtccgctctcgaacggctccaattaatggagaaattccttcagttgatgaagctacttcagatcatcagaggctgcttgacagactgcaattatatggcgtcgtggagcgtaaggttcaaggagatggtaactgtcagtttagtgctttatcagaccaattgtatcactcaccagaccaccacaatgatgtgagaaggaaagttgtaaatcagcttaagtctcacccagaaatttacgagggatatgttcctatggcatacgatgactatttggagatgatgtcaaagagtggccagtggggtgatcatgttacattgcaggctgctgctgattcgcatggtgtgaaaatatttgtcttcacttcttttaaggatacatgttgcatagagattcttcctaatgtccaaacgtcaaaacaagttattatgttgagtttctgggcagaggtgcattacaactcaatttatcctcaagaaggtacaccctcctcagatgagtatagaaagaagaaaaagtggtggatatttgggaataaaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

445

Amino Acids

50.54

Weight (kDa)

6.42

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
AarI CACCTGC 1 cut(s) 649
AatII GACGTC 3 cut(s) 515, 772, 798
Acc36I ACCTGC 2 cut(s) 641, 649
AccB1I GGYRCC 2 cut(s) 364, 588
AccB7I CCANNNNNTGG 1 cut(s) 821
AccBSI CCGCTC 3 cut(s) 735, 746, 801
AccI GTMKAC 2 cut(s) 49, 515
AccII CGCG 1 cut(s) 730
AclWI GGATC 1 cut(s) 56
AcoI YGGCCR 3 cut(s) 7, 683, 1087
AcsI RAATTY 2 cut(s) 828, 1026
AcuI CTGAAG 2 cut(s) 819, 837
AcyI GRCGYC 4 cut(s) 512, 769, 795, 894
AfaI GTAC 2 cut(s) 154, 1276
AfiI CCNNNNNNNGG 8 cut(s) 347, 477, 478, 624, 681, 719, 821, 1271
AflII CTTAAG 1 cut(s) 1010
AflIII ACRYGT 1 cut(s) 1172
AgsI TTSAA 3 cut(s) 203, 448, 914
AjnI CCWGG 3 cut(s) 64, 388, 707
AleI CACNNNNGTG 1 cut(s) 362
AloI GAACNNNNNNTCC 2 cut(s) 307, 339
AluBI AGCT 3 cut(s) 444, 848, 1009
AluI AGCT 3 cut(s) 444, 848, 1009
Alw26I GTCTC 1 cut(s) 1020
AlwI GGATC 1 cut(s) 56
AlwNI CAGNNNCTG 2 cut(s) 656, 868
AoxI GGCC 8 cut(s) 7, 391, 561, 568, 683, 710, 755, 1087
ApeKI GCWGC 6 cut(s) 629, 661, 763, 868, 1118, 1121
ApoI RAATTY 2 cut(s) 828, 1026
AseI ATTAAT 1 cut(s) 819
AspLEI GCGC 2 cut(s) 543, 732
AspS9I GGNCC 1 cut(s) 577
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 6 cut(s) 101, 440, 630, 957, 1010, 1109
AvaII GGWCC 1 cut(s) 577
BalI TGGCCA 2 cut(s) 9, 1089
BanI GGYRCC 2 cut(s) 364, 588
BanII GRGCYC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 1144
BbvI GCAGC 6 cut(s) 641, 673, 775, 855, 1105, 1108
BccI CCATC 2 cut(s) 50, 914
BceAI ACGGC 2 cut(s) 378, 825
BciT130I CCWGG 3 cut(s) 66, 390, 709
BciVI GTATCC 1 cut(s) 1162
BclI TGATCA 1 cut(s) 1099
BcnI CCSGG 1 cut(s) 575
BcoDI GTCTC 1 cut(s) 1020
BfaI CTAG 4 cut(s) 372, 384, 534, 585
BfmI CTRYAG 2 cut(s) 225, 648
BfrI CTTAAG 1 cut(s) 1010
BfuAI ACCTGC 2 cut(s) 641, 649
BfuI GTATCC 1 cut(s) 1162
Bme1390I CCNGG 4 cut(s) 66, 390, 575, 709
Bme18I GGWCC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 3 cut(s) 366, 590, 813
BmrFI CCNGG 4 cut(s) 66, 390, 575, 709
BmsI GCATC 3 cut(s) 97, 284, 447
BpiI GAAGAC 1 cut(s) 1144
BpmI CTGGAG 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 1251
BpuMI CCSGG 1 cut(s) 575
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 4 cut(s) 512, 769, 795, 894
BsaJI CCNNGG 3 cut(s) 124, 388, 707
BsaXI ACNNNNNCTCC 2 cut(s) 1061, 1091
Bsc4I CCNNNNNNNGG 8 cut(s) 347, 477, 478, 624, 681, 719, 821, 1271
Bse118I RCCGGY 2 cut(s) 617, 681
Bse1I ACTGG 1 cut(s) 1090
Bse3DI GCAATG 2 cut(s) 186, 1109
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 3 cut(s) 66, 390, 709
BseDI CCNNGG 3 cut(s) 124, 388, 707
BseGI GGATG 1 cut(s) 490
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 8 cut(s) 347, 477, 478, 624, 681, 719, 821, 1271
BseMI GCAATG 2 cut(s) 186, 1109
BseMII CTCAG 2 cut(s) 510, 1299
BseNI ACTGG 1 cut(s) 1090
BseRI GAGGAG 1 cut(s) 1273
BseXI GCAGC 6 cut(s) 641, 673, 775, 855, 1105, 1108
BsgI GTGCAG 2 cut(s) 438, 680
Bsh1236I CGCG 1 cut(s) 730
Bsh1285I CGRYCG 2 cut(s) 699, 752
BshFI GGCC 8 cut(s) 9, 393, 563, 570, 685, 712, 757, 1089
BshNI GGYRCC 2 cut(s) 364, 588
BsiEI CGRYCG 2 cut(s) 699, 752
BsiSI CCGG 5 cut(s) 564, 575, 618, 682, 758
BslI CCNNNNNNNGG 8 cut(s) 347, 477, 478, 624, 681, 719, 821, 1271
BsmAI GTCTC 1 cut(s) 1020
BsnI GGCC 8 cut(s) 9, 393, 563, 570, 685, 712, 757, 1089
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 7 cut(s) 61, 183, 473, 696, 749, 856, 1099
BspANI GGCC 8 cut(s) 9, 393, 563, 570, 685, 712, 757, 1089
BspCNI CTCAG 2 cut(s) 511, 1298
BspFNI CGCG 1 cut(s) 730
BspLI GGNNCC 3 cut(s) 366, 590, 813
BspMAI CTGCAG 1 cut(s) 652
BspMI ACCTGC 2 cut(s) 641, 649
BspPI GGATC 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 255
BspT107I GGYRCC 2 cut(s) 364, 588
BspTI CTTAAG 1 cut(s) 1010
BsrBI CCGCTC 3 cut(s) 735, 746, 801
BsrDI GCAATG 2 cut(s) 186, 1109
BsrFI RCCGGY 2 cut(s) 617, 681
BsrI ACTGG 1 cut(s) 1090
BssAI RCCGGY 2 cut(s) 617, 681
BssECI CCNNGG 3 cut(s) 124, 388, 707
BssMI GATC 7 cut(s) 61, 183, 473, 696, 749, 856, 1099
BssNI GRCGYC 4 cut(s) 512, 769, 795, 894
Bst2UI CCWGG 3 cut(s) 66, 390, 709
Bst4CI ACNGT 7 cut(s) 79, 332, 361, 428, 581, 593, 929
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 4 cut(s) 512, 769, 795, 894
BstAFI CTTAAG 1 cut(s) 1010
BstAPI GCANNNNNTGC 1 cut(s) 549
BstC8I GCNNGC 8 cut(s) 7, 355, 525, 550, 615, 683, 725, 1116
BstDEI CTNAG 3 cut(s) 44, 519, 1285
BstDSI CCRYGG 1 cut(s) 124
BstENI CCTNNNNNAGG 1 cut(s) 1269
BstF5I GGATG 1 cut(s) 490
BstFNI CGCG 1 cut(s) 730
BstHHI GCGC 2 cut(s) 543, 732
BstKTI GATC 7 cut(s) 64, 186, 476, 699, 752, 859, 1102
BstMAI GTCTC 1 cut(s) 1020
BstMBI GATC 7 cut(s) 61, 183, 473, 696, 749, 856, 1099
BstMCI CGRYCG 2 cut(s) 699, 752
BstMWI GCNNNNNNNGC 4 cut(s) 549, 729, 763, 772
BstNI CCWGG 3 cut(s) 66, 390, 709
BstNSI RCATGY 2 cut(s) 357, 1176
BstSCI CCNGG 4 cut(s) 64, 388, 573, 707
BstSFI CTRYAG 2 cut(s) 225, 648
BstUI CGCG 1 cut(s) 730
BstV1I GCAGC 6 cut(s) 641, 673, 775, 855, 1105, 1108
BstV2I GAAGAC 1 cut(s) 1144
BsuI GTATCC 1 cut(s) 1162
BsuRI GGCC 8 cut(s) 9, 393, 563, 570, 685, 712, 757, 1089
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 490
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 4 cut(s) 41, 337, 366, 1097
BveI ACCTGC 2 cut(s) 641, 649
Cac8I GCNNGC 8 cut(s) 7, 355, 525, 550, 615, 683, 725, 1116
CaiI CAGNNNCTG 2 cut(s) 656, 868
CfoI GCGC 2 cut(s) 543, 732
Cfr10I RCCGGY 2 cut(s) 617, 681
Cfr13I GGNCC 1 cut(s) 577
CpoI CGGWCCG 1 cut(s) 577
CseI GACGC 1 cut(s) 883
Csp6I GTAC 2 cut(s) 153, 1275
CspI CGGWCCG 1 cut(s) 577
CviAII CATG 9 cut(s) 17, 94, 167, 251, 354, 378, 1103, 1133, 1173
CviQI GTAC 2 cut(s) 153, 1275
DdeI CTNAG 3 cut(s) 44, 519, 1285
DpnI GATC 7 cut(s) 63, 185, 475, 698, 751, 858, 1101
DpnII GATC 7 cut(s) 61, 183, 473, 696, 749, 856, 1099
EaeI YGGCCR 3 cut(s) 7, 683, 1087
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 1 cut(s) 497
Eco147I AGGCCT 1 cut(s) 570
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 577
Eco57I CTGAAG 2 cut(s) 819, 837
EcoNI CCTNNNNNAGG 1 cut(s) 1269
EcoRII CCWGG 3 cut(s) 64, 388, 707
EcoT38I GRGCYC 1 cut(s) 43
FaeI CATG 9 cut(s) 20, 97, 170, 254, 357, 381, 1106, 1136, 1176
FatI CATG 9 cut(s) 16, 93, 166, 250, 353, 377, 1102, 1132, 1172
FbaI TGATCA 1 cut(s) 1099
FblI GTMKAC 2 cut(s) 49, 515
FokI GGATG 1 cut(s) 497
FriOI GRGCYC 1 cut(s) 43
FspBI CTAG 4 cut(s) 372, 384, 534, 585
GlaI GCGC 2 cut(s) 542, 731
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 8 cut(s) 9, 393, 563, 570, 685, 712, 757, 1089
HapII CCGG 5 cut(s) 564, 575, 618, 682, 758
HgaI GACGC 1 cut(s) 883
HhaI GCGC 2 cut(s) 543, 732
Hin1I GRCGYC 4 cut(s) 512, 769, 795, 894
Hin1II CATG 9 cut(s) 20, 97, 170, 254, 357, 381, 1106, 1136, 1176
Hin6I GCGC 2 cut(s) 541, 730
HinP1I GCGC 2 cut(s) 541, 730
HincII GTYRAC 3 cut(s) 405, 424, 516
HindII GTYRAC 3 cut(s) 405, 424, 516
HinfI GANTC 4 cut(s) 20, 158, 1127, 1186
HpaI GTTAAC 1 cut(s) 405
HpaII CCGG 5 cut(s) 564, 575, 618, 682, 758
HphI GGTGA 6 cut(s) 101, 440, 630, 957, 1010, 1109
Hpy166II GTNNAC 5 cut(s) 50, 405, 424, 516, 1277
Hpy188I TCNGA 6 cut(s) 328, 604, 856, 864, 949, 1288
Hpy188III TCNNGA 6 cut(s) 203, 216, 240, 309, 804, 1268
Hpy8I GTNNAC 5 cut(s) 50, 405, 424, 516, 1277
Hpy99I CGWCG 5 cut(s) 517, 681, 743, 771, 899
HpyAV CCTTC 7 cut(s) 306, 341, 378, 726, 843, 984, 1265
HpyCH4III ACNGT 7 cut(s) 79, 332, 361, 428, 581, 593, 929
HpyCH4IV ACGT 4 cut(s) 512, 769, 795, 1205
HpyF10VI GCNNNNNNNGC 4 cut(s) 549, 729, 763, 772
HpyF3I CTNAG 3 cut(s) 44, 519, 1285
HpySE526I ACGT 4 cut(s) 512, 769, 795, 1205
Hsp92I GRCGYC 4 cut(s) 512, 769, 795, 894
Hsp92II CATG 9 cut(s) 20, 97, 170, 254, 357, 381, 1106, 1136, 1176
HspAI GCGC 2 cut(s) 541, 730
KroI GCCGGC 1 cut(s) 681
KroNI GCCGGC 1 cut(s) 683
Ksp22I TGATCA 1 cut(s) 1099
KspAI GTTAAC 1 cut(s) 405
Kzo9I GATC 7 cut(s) 61, 183, 473, 696, 749, 856, 1099
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 6 cut(s) 350, 441, 740, 760, 817, 901
Lsp1109I GCAGC 6 cut(s) 641, 673, 775, 855, 1105, 1108
LweI GCATC 3 cut(s) 97, 284, 447
MaeI CTAG 4 cut(s) 372, 384, 534, 585
MaeII ACGT 4 cut(s) 512, 769, 795, 1205
MaeIII GTNAC 3 cut(s) 89, 923, 1105
MalI GATC 7 cut(s) 63, 185, 475, 698, 751, 858, 1101
MbiI CCGCTC 3 cut(s) 735, 746, 801
MboI GATC 7 cut(s) 61, 183, 473, 696, 749, 856, 1099
MboII GAAGA 5 cut(s) 218, 272, 1144, 1181, 1315
MfeI CAATTG 1 cut(s) 953
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 2 cut(s) 9, 1089
MluCI AATT 7 cut(s) 816, 828, 884, 953, 1026, 1257, 1333
MluNI TGGCCA 2 cut(s) 9, 1089
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 582
Mox20I TGGCCA 2 cut(s) 9, 1089
MroNI GCCGGC 1 cut(s) 681
MscI TGGCCA 2 cut(s) 9, 1089
MseI TTAA 4 cut(s) 404, 819, 1011, 1164
MslI CAYNNNNRTG 4 cut(s) 255, 362, 978, 981
Msp20I TGGCCA 2 cut(s) 9, 1089
MspCI CTTAAG 1 cut(s) 1010
MspI CCGG 5 cut(s) 564, 575, 618, 682, 758
MspR9I CCNGG 4 cut(s) 66, 390, 575, 709
MunI CAATTG 1 cut(s) 953
MvaI CCWGG 3 cut(s) 66, 390, 709
MvnI CGCG 1 cut(s) 730
MwoI GCNNNNNNNGC 4 cut(s) 549, 729, 763, 772
NaeI GCCGGC 1 cut(s) 683
NciI CCSGG 1 cut(s) 575
NdeII GATC 7 cut(s) 61, 183, 473, 696, 749, 856, 1099
NgoMIV GCCGGC 1 cut(s) 681
NlaIII CATG 9 cut(s) 20, 97, 170, 254, 357, 381, 1106, 1136, 1176
NlaIV GGNNCC 3 cut(s) 366, 590, 813
NmuCI GTSAC 1 cut(s) 89
NspI RCATGY 2 cut(s) 357, 1176
OliI CACNNNNGTG 1 cut(s) 362
PaeI GCATGC 1 cut(s) 357
PaqCI CACCTGC 1 cut(s) 649
PceI AGGCCT 1 cut(s) 570
PciI ACATGT 1 cut(s) 1172
PciSI GCTCTTC 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 683
PfeI GAWTC 3 cut(s) 158, 1127, 1186
PflMI CCANNNNNTGG 1 cut(s) 821
PfoI TCCNGGA 1 cut(s) 573
Ple19I CGATCG 2 cut(s) 699, 752
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PscI ACATGT 1 cut(s) 1172
PshBI ATTAAT 1 cut(s) 819
PsiI TTATAA 1 cut(s) 72
Psp6I CCWGG 3 cut(s) 64, 388, 707
PspGI CCWGG 3 cut(s) 64, 388, 707
PspN4I GGNNCC 3 cut(s) 366, 590, 813
PspPI GGNCC 1 cut(s) 577
PstI CTGCAG 1 cut(s) 652
PstNI CAGNNNCTG 2 cut(s) 656, 868
PvuI CGATCG 2 cut(s) 699, 752
RsaI GTAC 2 cut(s) 154, 1276
RsaNI GTAC 2 cut(s) 153, 1275
RseI CAYNNNNRTG 4 cut(s) 255, 362, 978, 981
Rsr2I CGGWCCG 1 cut(s) 577
RsrII CGGWCCG 1 cut(s) 577
SalI GTCGAC 1 cut(s) 514
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 4 cut(s) 404, 819, 1011, 1164
Sau3AI GATC 7 cut(s) 61, 183, 473, 696, 749, 856, 1099
Sau96I GGNCC 1 cut(s) 577
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 4 cut(s) 66, 390, 575, 709
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 3 cut(s) 97, 284, 447
SfcI CTRYAG 2 cut(s) 225, 648
SinI GGWCC 1 cut(s) 577
SmiMI CAYNNNNRTG 4 cut(s) 255, 362, 978, 981
SmlI CTYRAG 2 cut(s) 1010, 1266
SmoI CTYRAG 2 cut(s) 1010, 1266
SphI GCATGC 1 cut(s) 357
Sse9I AATT 7 cut(s) 816, 828, 884, 953, 1026, 1257, 1333
SseBI AGGCCT 1 cut(s) 570
SspI AATATT 3 cut(s) 134, 212, 1146
SspMI CTAG 4 cut(s) 372, 384, 534, 585
StuI AGGCCT 1 cut(s) 570
StyD4I CCNGG 4 cut(s) 64, 388, 573, 707
TaaI ACNGT 7 cut(s) 79, 332, 361, 428, 581, 593, 929
TaiI ACGT 4 cut(s) 515, 772, 798, 1208
TaqI TCGA 6 cut(s) 241, 515, 596, 748, 752, 805
TasI AATT 7 cut(s) 816, 828, 884, 953, 1026, 1257, 1333
TauI GCSGC 5 cut(s) 530, 541, 730, 735, 746
TfiI GAWTC 3 cut(s) 158, 1127, 1186
Tru1I TTAA 4 cut(s) 404, 819, 1011, 1164
Tru9I TTAA 4 cut(s) 404, 819, 1011, 1164
TscAI CASTG 4 cut(s) 41, 337, 366, 1097
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 6 cut(s) 629, 661, 763, 868, 1118, 1121
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 5 cut(s) 273, 360, 366, 465, 858
TspGWI ACGGA 2 cut(s) 141, 727
TspRI CASTG 4 cut(s) 41, 337, 366, 1097
Van91I CCANNNNNTGG 1 cut(s) 821
Vha464I CTTAAG 1 cut(s) 1010
VpaK11BI GGWCC 1 cut(s) 577
VspI ATTAAT 1 cut(s) 819
XagI CCTNNNNNAGG 1 cut(s) 1269
XapI RAATTY 2 cut(s) 828, 1026
XceI RCATGY 2 cut(s) 357, 1176
XmiI GTMKAC 2 cut(s) 49, 515
XspI CTAG 4 cut(s) 372, 384, 534, 585
ZraI GACGTC 3 cut(s) 513, 770, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.