Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001571

Physical Location & Seq

Genomic Coordinates Reverse (-)

36916923 .. 36919966

Gene Structure 3044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0312400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGTTTATGGAATAACCAGCACCAGGTGGAAGACTACCGAAATTTGTGTGTTCAAGCAGCACCGCCTTTTATCGAATGGCTCAAACCATCAGCGTCGTCCTCTTTTGCTTCATCACTGTCTTCATCATCATTGACGTCTTTTTGTTCGTTGGAAGACCAAAACAGTAGTACTCTGCAATGCTTGCCTCTTTTAAGCAGGTTTACCGATACAAAGCCGGTGAAAAGAGAAGATATTGGGGTACAGAGAGAGGGTTTCGGAGTGAAAGAAGAGCAGATAGAGAAGGTTACAGTGGCACTGCACATTGGACTGCCTAATAGCACAACTGCAGATGATGAGAAGAAGGTTTTGGATGATGTCAAGGAAGAAGACGTAGTACTACCAATAACCAAGAATAGATTTAACGCCAATGGATGCTCTGCGACAGAGAGTAGGTTTTGGATACCGACGCCAGCTCAGATTCTTGTTGGGCCGATGCAGTTTGCTTGTTCCATTTGCAGCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGCCACGGATCTGAATTTAGGAAAGGGCCAGATTCTCTAAAAGGAACACAACCAGCCGCAATGCTGAGGCTACCATGCTACTGTTGTGCTCAGGGCTGCAAGAACAATATCAACCATCCAAGAGCCAAGCCACTCAAAGACTTCAGAACTCTCCAAACTCACTACAAGAGAAAGCATGGAGCAAAGCCATTTATGTGCAGAAAATGCGGCAAAACATTTGCTGTCAAAGGTGATTGGAGAACACATGAAAAGAACTGCGGCAAGTTGTGGTATTGCAGCTGTGGATCGGATTTCAAACACAAAAGATCGCTCAAAGACCACATCAGGTCCTTCGGAAAAGGGCATTCTCCGCGCCCTTGTGTCGATGGTTTTCATGAGGATGATCAGAAGGAATGCATTACTGGTTCTGAGGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

320

Amino Acids

36.13

Weight (kDa)

8.76

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	207 - 241	4.5e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	244 - 268	6.8e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03330 AT5G03330 AT5G03330 AT5G03330
fragaria_vesca	FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161
malus_domestica	MD04G1095000.v1.1 MD12G1115200.v1.1
prunus_persica	Prupe.6G106600_v2.0.a1 Prupe.6G234300_v2.0.a1
pyrus_communis	pycom04g09020 pycom12g11450
rosa_chinensis	RchiOBHm_Chr3g0470011 RchiOBHm_Chr5g0058171
rosa_laevigata	RLG00000024304 RLG00000035200
rosa_multiflora	Rmu_sc0000367.1_g000036 Rmu_sc0009972.1_g000001 Rmu_sc0017440.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022390 Rroxscaffold_3G00230070 Rroxscaffold_3G00230090 Rroxscaffold_3G00239050 Rroxscaffold_6G00411280
rosa_rugosa	Rorug03G0106100 Rorug03G0106100 Rorug03G0106100 Rorug05G0312300 Rorug05G0312400
rosa_samantha	Rh3AG155200 Rh3BG179300 Rh3CG169900 Rh3DG195800 Rh5AG380300 Rh5BG391400 Rh5CG415300 Rh5DG406100
rosa_wichuraiana	Rw3G014620 Rw5G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	189
AccII	CGCG	1 cut(s)	895
AciI	CCGC	5 cut(s)	65, 600, 750, 801, 893
AclWI	GGATC	2 cut(s)	559, 835
AcsI	RAATTY	2 cut(s)	43, 557
AcuI	CTGAAG	1 cut(s)	670
AcyI	GRCGYC	2 cut(s)	137, 449
AdeI	CACNNNGTG	1 cut(s)	28
AfaI	GTAC	3 cut(s)	172, 243, 378
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	56, 511, 838
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	2 cut(s)	455, 822
AluI	AGCT	2 cut(s)	455, 822
Alw21I	GWGCWC	1 cut(s)	634
AlwI	GGATC	2 cut(s)	559, 835
AoxI	GGCC	3 cut(s)	470, 544, 569
ApeKI	GCWGC	4 cut(s)	59, 498, 639, 819
ApoI	RAATTY	2 cut(s)	43, 557
AspLEI	GCGC	1 cut(s)	897
AspS9I	GGNCC	4 cut(s)	470, 544, 569, 870
AsuHPI	GGTGA	2 cut(s)	232, 785
AvaII	GGWCC	1 cut(s)	870
BarI	GAAGNNNNNNTAC	2 cut(s)	360, 392
BbsI	GAAGAC	4 cut(s)	39, 114, 162, 375
Bbv12I	GWGCWC	1 cut(s)	634
BbvCI	CCTCAGC	1 cut(s)	608
BbvI	GCAGC	4 cut(s)	71, 510, 626, 831
BccI	CCATC	3 cut(s)	97, 666, 902
BciT130I	CCWGG	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	435
BclI	TGATCA	1 cut(s)	925
BfmI	CTRYAG	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	7 cut(s)	60, 499, 600, 640, 751, 802, 820
BlsI	GCNGC	7 cut(s)	61, 500, 601, 641, 752, 803, 821
BmcAI	AGTACT	2 cut(s)	172, 378
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	870
BmgT120I	GGNCC	4 cut(s)	470, 544, 569, 870
BmiI	GGNNCC	1 cut(s)	545
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	404, 465, 522
BpiI	GAAGAC	4 cut(s)	39, 114, 162, 375
Bpu10I	CCTNAGC	2 cut(s)	608, 633
BsaHI	GRCGYC	2 cut(s)	137, 449
BsaJI	CCNNGG	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	949
Bse3DI	GCAATG	2 cut(s)	185, 609
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	5 cut(s)	358, 419, 658, 928, 961
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	2 cut(s)	185, 609
BseMII	CTCAG	4 cut(s)	470, 599, 647, 942
BseNI	ACTGG	1 cut(s)	949
BseXI	GCAGC	4 cut(s)	71, 510, 626, 831
BsgI	GTGCAG	2 cut(s)	284, 760
Bsh1236I	CGCG	1 cut(s)	895
BshFI	GGCC	3 cut(s)	472, 546, 571
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmI	GAATGC	2 cut(s)	886, 941
BsnI	GGCC	3 cut(s)	472, 546, 571
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	4 cut(s)	551, 827, 848, 925
BspACI	CCGC	5 cut(s)	65, 600, 750, 801, 893
BspANI	GGCC	3 cut(s)	472, 546, 571
BspCNI	CTCAG	4 cut(s)	469, 600, 646, 943
BspFNI	CGCG	1 cut(s)	895
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	1 cut(s)	545
BspMAI	CTGCAG	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	559, 835
BspQI	GCTCTTC	1 cut(s)	264
BsrDI	GCAATG	2 cut(s)	185, 609
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	949
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	4 cut(s)	551, 827, 848, 925
BssNI	GRCGYC	2 cut(s)	137, 449
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	4 cut(s)	120, 167, 292, 626
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	2 cut(s)	137, 449
BstAPI	GCANNNNNTGC	2 cut(s)	184, 747
BstC8I	GCNNGC	2 cut(s)	185, 453
BstDEI	CTNAG	4 cut(s)	456, 608, 633, 951
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	5 cut(s)	358, 419, 658, 928, 961
BstFNI	CGCG	1 cut(s)	895
BstHHI	GCGC	1 cut(s)	897
BstKTI	GATC	4 cut(s)	554, 830, 851, 928
BstMBI	GATC	4 cut(s)	551, 827, 848, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 747, 892
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	327
BstUI	CGCG	1 cut(s)	895
BstV1I	GCAGC	4 cut(s)	71, 510, 626, 831
BstV2I	GAAGAC	4 cut(s)	39, 114, 162, 375
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	472, 546, 571
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	5 cut(s)	358, 419, 658, 928, 961
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	3 cut(s)	116, 296, 297
BveI	ACCTGC	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	185, 453
CciI	TCATGA	1 cut(s)	916
CfoI	GCGC	1 cut(s)	897
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	4 cut(s)	470, 544, 569, 870
CseI	GACGC	2 cut(s)	84, 457
CsiI	ACCWGGT	1 cut(s)	24
Csp6I	GTAC	3 cut(s)	171, 242, 377
CviAII	CATG	5 cut(s)	526, 618, 719, 788, 917
CviQI	GTAC	3 cut(s)	171, 242, 377
DdeI	CTNAG	4 cut(s)	456, 608, 633, 951
DpnI	GATC	4 cut(s)	553, 829, 850, 927
DpnII	GATC	4 cut(s)	551, 827, 848, 925
DraIII	CACNNNGTG	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	870
Eco57I	CTGAAG	1 cut(s)	670
EcoO109I	RGGNCCY	1 cut(s)	870
EcoRII	CCWGG	1 cut(s)	24
EcoT22I	ATGCAT	2 cut(s)	537, 941
FaeI	CATG	5 cut(s)	529, 621, 722, 791, 920
FaiI	YATR	9 cut(s)	10, 527, 537, 539, 619, 720, 737, 789, 918
FatI	CATG	5 cut(s)	525, 617, 718, 787, 916
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	925
Fnu4HI	GCNGC	7 cut(s)	60, 499, 600, 640, 751, 802, 820
FokI	GGATG	4 cut(s)	365, 426, 645, 935
Fsp4HI	GCNGC	7 cut(s)	60, 499, 600, 640, 751, 802, 820
GlaI	GCGC	1 cut(s)	896
GluI	GCNGC	7 cut(s)	60, 499, 600, 640, 751, 802, 820
HaeIII	GGCC	3 cut(s)	472, 546, 571
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	2 cut(s)	84, 457
HhaI	GCGC	1 cut(s)	897
Hin1I	GRCGYC	2 cut(s)	137, 449
Hin1II	CATG	5 cut(s)	529, 621, 722, 791, 920
Hin6I	GCGC	1 cut(s)	895
HinP1I	GCGC	1 cut(s)	895
HinfI	GANTC	2 cut(s)	460, 575
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	2 cut(s)	232, 785
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	8 cut(s)	260, 459, 556, 689, 832, 878, 930, 952
Hpy188III	TCNNGA	1 cut(s)	917
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	2 cut(s)	100, 451
HpyAV	CCTTC	5 cut(s)	277, 337, 517, 883, 925
HpyCH4III	ACNGT	4 cut(s)	120, 167, 292, 626
HpyCH4IV	ACGT	2 cut(s)	137, 372
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 747, 892
HpyF3I	CTNAG	4 cut(s)	456, 608, 633, 951
HpySE526I	ACGT	2 cut(s)	137, 372
Hsp92I	GRCGYC	2 cut(s)	137, 449
Hsp92II	CATG	5 cut(s)	529, 621, 722, 791, 920
HspAI	GCGC	1 cut(s)	895
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	4 cut(s)	551, 827, 848, 925
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	722
Lsp1109I	GCAGC	4 cut(s)	71, 510, 626, 831
LweI	GCATC	3 cut(s)	404, 465, 522
MabI	ACCWGGT	1 cut(s)	24
MaeII	ACGT	2 cut(s)	137, 372
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	4 cut(s)	553, 829, 850, 927
MboI	GATC	4 cut(s)	551, 827, 848, 925
MboII	GAAGA	8 cut(s)	44, 114, 167, 242, 281, 352, 377, 380
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	634
MluCI	AATT	2 cut(s)	43, 557
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	6 cut(s)	112, 198, 244, 603, 913, 946
Mph1103I	ATGCAT	2 cut(s)	537, 941
MseI	TTAA	2 cut(s)	194, 402
MslI	CAYNNNNRTG	3 cut(s)	530, 736, 921
MspA1I	CMGCKG	1 cut(s)	822
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	2 cut(s)	886, 941
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	895
MwoI	GCNNNNNNNGC	3 cut(s)	184, 747, 892
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	4 cut(s)	551, 827, 848, 925
NlaIII	CATG	5 cut(s)	529, 621, 722, 791, 920
NlaIV	GGNNCC	1 cut(s)	545
NsiI	ATGCAT	2 cut(s)	537, 941
NspI	RCATGY	1 cut(s)	529
PagI	TCATGA	1 cut(s)	916
PciSI	GCTCTTC	1 cut(s)	264
PctI	GAATGC	2 cut(s)	886, 941
PfeI	GAWTC	2 cut(s)	460, 575
PkrI	GCNGC	7 cut(s)	61, 500, 601, 641, 752, 803, 821
PpuMI	RGGWCCY	1 cut(s)	870
Psp5II	RGGWCCY	1 cut(s)	870
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	545
PspPI	GGNCC	4 cut(s)	470, 544, 569, 870
PspPPI	RGGWCCY	1 cut(s)	870
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	822
RsaI	GTAC	3 cut(s)	172, 243, 378
RsaNI	GTAC	3 cut(s)	171, 242, 377
RseI	CAYNNNNRTG	3 cut(s)	530, 736, 921
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	194, 402
SatI	GCNGC	7 cut(s)	60, 499, 600, 640, 751, 802, 820
Sau3AI	GATC	4 cut(s)	551, 827, 848, 925
Sau96I	GGNCC	4 cut(s)	470, 544, 569, 870
ScaI	AGTACT	2 cut(s)	172, 378
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	634
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	3 cut(s)	404, 465, 522
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	870
SmiMI	CAYNNNNRTG	3 cut(s)	530, 736, 921
Sse9I	AATT	2 cut(s)	43, 557
SsiI	CCGC	5 cut(s)	65, 600, 750, 801, 893
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	4 cut(s)	120, 167, 292, 626
TaiI	ACGT	2 cut(s)	140, 375
TaqI	TCGA	2 cut(s)	75, 906
TasI	AATT	2 cut(s)	43, 557
TatI	WGTACW	2 cut(s)	170, 376
TauI	GCSGC	3 cut(s)	602, 753, 804
TfiI	GAWTC	2 cut(s)	460, 575
Tru1I	TTAA	2 cut(s)	194, 402
Tru9I	TTAA	2 cut(s)	194, 402
TscAI	CASTG	3 cut(s)	123, 297, 303
TseI	GCWGC	4 cut(s)	59, 498, 639, 819
TspDTI	ATGAA	4 cut(s)	102, 114, 804, 905
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	3 cut(s)	123, 297, 303
VpaK11BI	GGWCC	1 cut(s)	870
XapI	RAATTY	2 cut(s)	43, 557
XceI	RCATGY	1 cut(s)	529
ZraI	GACGTC	1 cut(s)	138
ZrmI	AGTACT	2 cut(s)	172, 378
Zsp2I	ATGCAT	2 cut(s)	537, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.