Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001571

Physical Location & Seq

Genomic Coordinates Reverse (-)

28427082 .. 28427790

Gene Structure 709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTACTTGCATGAAAGTATAGGATTCGACAGAGGGTTGATTGCTCTTGGAAATATATTTTGGTTGACTGGTGTGGCCCTTTTACTTGGTTGGCGTTCTACATTGAATGTCTTCACTAGCAAAGCACACGTAAAGGGTTCTGCATCTTTTCTGATTGGTCTCTTTTTCCTTGTTGTTCAGTGGGGACTCCAGCTCTTTGAAGGTGATCAGTATTCGAATTGTGGGTATTGTGACTCGGTTAACCAAGATGGCACTAATTACTATCCGGGGCATTATTTTAAGGAAGATGTGGTGTATGGTGCAGATTGTATAAATGTGGAATATGATGAACTTATTGCTCATACTCTTCAAGAAGAGCTGTCACTACTTGATATAGAGGACGAGCCGGGATCTGCGCCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

134

Amino Acids

15.0

Weight (kDa)

4.28

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03330 AT5G03330 AT5G03330 AT5G03330
fragaria_vesca	FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_3g31490 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161 FvH4_6g16161
malus_domestica	MD04G1095000.v1.1 MD12G1115200.v1.1
prunus_persica	Prupe.6G106600_v2.0.a1 Prupe.6G234300_v2.0.a1
pyrus_communis	pycom04g09020 pycom12g11450
rosa_chinensis	RchiOBHm_Chr3g0470011 RchiOBHm_Chr5g0058171
rosa_laevigata	RLG00000024304 RLG00000035200
rosa_multiflora	Rmu_sc0000367.1_g000036 Rmu_sc0009972.1_g000001 Rmu_sc0017440.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022390 Rroxscaffold_3G00230070 Rroxscaffold_3G00230090 Rroxscaffold_3G00239050 Rroxscaffold_6G00411280
rosa_rugosa	Rorug03G0106100 Rorug03G0106100 Rorug03G0106100 Rorug05G0312300 Rorug05G0312400
rosa_samantha	Rh3AG155200 Rh3BG179300 Rh3CG169900 Rh3DG195800 Rh5AG380300 Rh5BG391400 Rh5CG415300 Rh5DG406100
rosa_wichuraiana	Rw3G014620 Rw5G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	397
AfaI	GTAC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	106, 200, 350
AjuI	GAANNNNNNNTTGG	2 cut(s)	43, 75
AluBI	AGCT	2 cut(s)	193, 358
AluI	AGCT	2 cut(s)	193, 358
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	397
AoxI	GGCC	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	2 cut(s)	267, 387
AsuHPI	GGTGA	1 cut(s)	215
AsuII	TTCGAA	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	103
BccI	CCATC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	2 cut(s)	267, 387
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	117
Bme1390I	CCNGG	2 cut(s)	267, 387
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	267, 387
BmsI	GCATC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	267, 387
BsaAI	YACGTR	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	266, 386
BslFI	GGGAC	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	205, 389
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	397
BspQI	GCTCTTC	1 cut(s)	348
BspT104I	TTCGAA	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	205, 389
Bst6I	CTCTTC	2 cut(s)	348, 351
BstBAI	YACGTR	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	2 cut(s)	208, 392
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	205, 389
BstSCI	CCNGG	2 cut(s)	265, 385
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	4 cut(s)	77, 193, 358, 385
CviKI_1	RGCY	4 cut(s)	77, 193, 358, 385
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	207, 391
DpnII	GATC	2 cut(s)	205, 389
Eam1104I	CTCTTC	2 cut(s)	348, 351
EarI	CTCTTC	2 cut(s)	348, 351
Eco31I	GGTCTC	1 cut(s)	164
FaeI	CATG	1 cut(s)	14
FaiI	YATR	8 cut(s)	12, 20, 56, 297, 311, 324, 342, 374
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	1 cut(s)	10
FbaI	TGATCA	1 cut(s)	205
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	2 cut(s)	266, 386
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	2 cut(s)	66, 241
HindII	GTYRAC	2 cut(s)	66, 241
HinfI	GANTC	3 cut(s)	24, 186, 233
HpaI	GTTAAC	1 cut(s)	241
HpaII	CCGG	2 cut(s)	266, 386
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	66, 241
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	2 cut(s)	66, 241
HpyAV	CCTTC	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	10, 143, 302
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	14
HspAI	GCGC	1 cut(s)	395
Ksp22I	TGATCA	1 cut(s)	205
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	205, 389
LguI	GCTCTTC	1 cut(s)	348
LpnPI	CCDG	4 cut(s)	54, 203, 279, 399
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	230, 360
MalI	GATC	2 cut(s)	207, 391
MboI	GATC	2 cut(s)	205, 389
MboII	GAAGA	4 cut(s)	103, 296, 338, 365
MflI	RGATCY	1 cut(s)	389
MluCI	AATT	2 cut(s)	217, 256
MlyI	GAGTC	2 cut(s)	180, 227
MnlI	CCTC	2 cut(s)	26, 370
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	2 cut(s)	240, 279
MspI	CCGG	2 cut(s)	266, 386
MspR9I	CCNGG	2 cut(s)	267, 387
NciI	CCSGG	2 cut(s)	267, 387
NdeII	GATC	2 cut(s)	205, 389
NlaIII	CATG	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	230, 360
NspV	TTCGAA	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	24
PleI	GAGTC	2 cut(s)	180, 227
PpsI	GAGTC	2 cut(s)	180, 227
Ppu21I	YACGTR	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	240, 279
Sau3AI	GATC	2 cut(s)	205, 389
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	180, 227
ScrFI	CCNGG	2 cut(s)	267, 387
SetI	ASST	4 cut(s)	132, 195, 205, 360
SfaNI	GCATC	1 cut(s)	152
SfuI	TTCGAA	1 cut(s)	215
Sse9I	AATT	2 cut(s)	217, 256
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	265, 385
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	27, 215
TasI	AATT	2 cut(s)	217, 256
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	2 cut(s)	240, 279
Tru9I	TTAA	2 cut(s)	240, 279
TscAI	CASTG	1 cut(s)	185
TseFI	GTSAC	2 cut(s)	230, 360
Tsp45I	GTSAC	2 cut(s)	230, 360
TspDTI	ATGAA	2 cut(s)	27, 342
TspRI	CASTG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.