Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004191

Physical Location & Seq

Genomic Coordinates Reverse (-)

3932494 .. 3934094

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G039400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGCCAAAAGAAACAACTCCTCGAGCCTTCAAACTTTACCCAGCAACTGATCAAGCTGCAAAATATGTTTGTGCAGCTATACTAAAGGACTCTGATTATAAAGAAGTAGATAGAGCTGAGTGCCAATTTTCTACAACATCTACTGTCCTTGATAATGGATCACAGGGTAATCCTTTTAATCCACCAAAGACAGCCTCAACCGGTTTCTTTGACTCTATTGAAAGTATTTGGAGCAATCTGTGGAATATGTTGGTAGATTTCGTCACTGGAAAAACTTCCAGGAAATGCCCCAGGTTCTTTGACTCCAGGTGCCACATACAGTATATATGTATGAGTTGGATTGTGATGTTTGGTATACTTTTGGCAATTTTTCCAACAGTGGTTGTGCTACTGTGGCTTTTACATCAAAAGGGACTTTTTGATCCTTTATATGATTGGTGGGAAGATCATTTTTGGGATGATAATCAGCACACCAATGATATTCGGAAACACAGAAGTGAAGTAGACCGCTCGCGCACTCATGTTCATAAAAATCATGGGCATGAAGCAAGGAACCACAAGCATGGTTCTCATCATAAGCGACAAAACTTTCACAATGATCACACGCATAACCAGTTTGAAAGAGGCAGCGATTATTACTACCAACTCCACCATGTCCACAAAGACAAGCACAAGCATGGGAGACGAAAGCATTCAAGTGTTATGCAGAAAGTTGATGAAAATACCGGATACAGCCAGAAACAAGAAAGGAGACTAACAAAAGAATATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

259

Amino Acids

30.61

Weight (kDa)

8.85

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11720
fragaria_vesca	FvH4_5g01650 FvH4_5g28890
malus_domestica	MD04G1066100.v1.1
prunus_persica	Prupe.5G092400_v2.0.a1 Prupe.5G092400_v2.0.a1 Prupe.8G039400_v2.0.a1 Prupe.8G039500_v2.0.a1 Prupe.8G039500_v2.0.a1
pyrus_communis	pycom04g05950
rosa_chinensis	RchiOBHm_Chr4g0410761 RchiOBHm_Chr7g0199071
rosa_laevigata	RLG00000003818 RLG00000008399
rosa_multiflora	Rmu_sc0009499.1_g000004 Rmu_sc0021158.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257150 Rroxscaffold_5G00355510
rosa_rugosa	Rorug04G0111100 Rorug04G0111200 Rorug07G0052400 Rorug07G0052500
rosa_samantha	Rh4AG162900 Rh4BG161700 Rh4BG162100 Rh4CG175700 Rh4DG158600 Rh7AG175800 Rh7BG179000 Rh7CG184900 Rh7DG178600
rosa_wichuraiana	Rw4G013580 Rw7G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	312
AccBSI	CCGCTC	1 cut(s)	513
AccI	GTMKAC	2 cut(s)	358, 507
AccII	CGCG	1 cut(s)	517
AciI	CCGC	1 cut(s)	511
AclWI	GGATC	2 cut(s)	169, 419
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	34, 224, 623, 699
AjnI	CCWGG	3 cut(s)	281, 293, 308
AleI	CACNNNNGTG	1 cut(s)	498
AluBI	AGCT	3 cut(s)	59, 80, 119
AluI	AGCT	3 cut(s)	59, 80, 119
Alw26I	GTCTC	2 cut(s)	679, 748
AlwI	GGATC	2 cut(s)	169, 419
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	24
ApeKI	GCWGC	3 cut(s)	59, 77, 630
AsiGI	ACCGGT	1 cut(s)	203
Asp700I	GAANNNNTTC	2 cut(s)	277, 694
AspLEI	GCGC	1 cut(s)	519
AvaI	CYCGRG	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	46, 89, 642
BciT130I	CCWGG	3 cut(s)	283, 295, 310
BciVI	GTATCC	1 cut(s)	725
BclI	TGATCA	2 cut(s)	52, 601
BcoDI	GTCTC	2 cut(s)	679, 748
BfuI	GTATCC	1 cut(s)	725
BisI	GCNGC	3 cut(s)	60, 78, 631
BlsI	GCNGC	3 cut(s)	61, 79, 632
Bme1390I	CCNGG	3 cut(s)	283, 295, 310
BmeT110I	CYCGRG	1 cut(s)	24
BmiI	GGNNCC	3 cut(s)	6, 314, 557
BmrFI	CCNGG	3 cut(s)	283, 295, 310
BpmI	CTGGAG	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	293
BsaWI	WCCGGW	2 cut(s)	203, 728
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	274, 616
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	283, 295, 310
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	274, 616
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	3 cut(s)	46, 89, 642
BseYI	CCCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	517
BshNI	GGYRCC	1 cut(s)	312
BshTI	ACCGGT	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	204, 729
BslFI	GGGAC	1 cut(s)	429
BsmAI	GTCTC	2 cut(s)	679, 748
BsmBI	CGTCTC	1 cut(s)	679
BsmFI	GGGAC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	694
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	5 cut(s)	52, 161, 424, 448, 601
BspACI	CCGC	1 cut(s)	511
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	517
BspLI	GGNNCC	3 cut(s)	6, 314, 557
BspPI	GGATC	2 cut(s)	169, 419
BspT107I	GGYRCC	1 cut(s)	312
BsrBI	CCGCTC	1 cut(s)	513
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	274, 616
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	5 cut(s)	52, 161, 424, 448, 601
BssNAI	GTATAC	1 cut(s)	359
Bst1107I	GTATAC	1 cut(s)	359
Bst2UI	CCWGG	3 cut(s)	283, 295, 310
Bst4CI	ACNGT	4 cut(s)	148, 324, 382, 396
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	5 cut(s)	55, 164, 427, 451, 604
BstMAI	GTCTC	2 cut(s)	679, 748
BstMBI	GATC	5 cut(s)	52, 161, 424, 448, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	3 cut(s)	283, 295, 310
BstSCI	CCNGG	3 cut(s)	281, 293, 308
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	3 cut(s)	46, 89, 642
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstZ17I	GTATAC	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	725
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	2 cut(s)	267, 387
Cac8I	GCNNGC	1 cut(s)	515
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	203
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	6 cut(s)	524, 539, 545, 566, 656, 680
CviJI	RGCY	8 cut(s)	7, 29, 59, 80, 119, 197, 400, 738
CviKI_1	RGCY	8 cut(s)	7, 29, 59, 80, 119, 197, 400, 738
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	5 cut(s)	54, 163, 426, 450, 603
DpnII	GATC	5 cut(s)	52, 161, 424, 448, 601
Eco88I	CYCGRG	1 cut(s)	24
EcoRII	CCWGG	3 cut(s)	281, 293, 308
Esp3I	CGTCTC	1 cut(s)	679
FaeI	CATG	6 cut(s)	527, 542, 548, 569, 659, 683
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	6 cut(s)	523, 538, 544, 565, 655, 679
FbaI	TGATCA	2 cut(s)	52, 601
FblI	GTMKAC	2 cut(s)	358, 507
Fnu4HI	GCNGC	3 cut(s)	60, 78, 631
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	3 cut(s)	60, 78, 631
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	3 cut(s)	60, 78, 631
GsaI	CCCAGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	292
HapII	CCGG	2 cut(s)	204, 729
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	6 cut(s)	527, 542, 548, 569, 659, 683
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	3 cut(s)	92, 215, 305
HpaII	CCGG	2 cut(s)	204, 729
Hpy166II	GTNNAC	3 cut(s)	359, 508, 661
Hpy188I	TCNGA	2 cut(s)	97, 489
Hpy8I	GTNNAC	3 cut(s)	359, 508, 661
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	4 cut(s)	148, 324, 382, 396
HpyCH4V	TGCA	3 cut(s)	62, 77, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	6 cut(s)	527, 542, 548, 569, 659, 683
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	2 cut(s)	52, 601
Kzo9I	GATC	5 cut(s)	52, 161, 424, 448, 601
LmnI	GCTCC	2 cut(s)	4, 234
Lsp1109I	GCAGC	3 cut(s)	46, 89, 642
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	5 cut(s)	54, 163, 426, 450, 603
MbiI	CCGCTC	1 cut(s)	513
MboI	GATC	5 cut(s)	52, 161, 424, 448, 601
MboII	GAAGA	1 cut(s)	458
MluCI	AATT	2 cut(s)	128, 369
MlyI	GAGTC	3 cut(s)	86, 209, 299
MmeI	TCCRAC	2 cut(s)	320, 401
MnlI	CCTC	3 cut(s)	33, 208, 620
MroXI	GAANNNNTTC	2 cut(s)	277, 694
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	6 cut(s)	477, 498, 543, 564, 678, 699
MspI	CCGG	2 cut(s)	204, 729
MspR9I	CCNGG	3 cut(s)	283, 295, 310
Mva1269I	GAATGC	1 cut(s)	694
MvaI	CCWGG	3 cut(s)	283, 295, 310
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	1 cut(s)	397
NdeII	GATC	5 cut(s)	52, 161, 424, 448, 601
NlaIII	CATG	6 cut(s)	527, 542, 548, 569, 659, 683
NlaIV	GGNNCC	3 cut(s)	6, 314, 557
NmuCI	GTSAC	1 cut(s)	265
OliI	CACNNNNGTG	1 cut(s)	498
PaeR7I	CTCGAG	1 cut(s)	24
PctI	GAATGC	1 cut(s)	694
PdmI	GAANNNNTTC	2 cut(s)	277, 694
PfoI	TCCNGGA	1 cut(s)	281
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	61, 79, 632
PleI	GAGTC	3 cut(s)	86, 209, 299
PpsI	GAGTC	3 cut(s)	86, 209, 299
PsiI	TTATAA	1 cut(s)	102
Psp6I	CCWGG	3 cut(s)	281, 293, 308
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	3 cut(s)	281, 293, 308
PspN4I	GGNNCC	3 cut(s)	6, 314, 557
PspXI	VCTCGAGB	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	50
RseI	CAYNNNNRTG	6 cut(s)	477, 498, 543, 564, 678, 699
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	3 cut(s)	60, 78, 631
Sau3AI	GATC	5 cut(s)	52, 161, 424, 448, 601
SchI	GAGTC	3 cut(s)	86, 209, 299
ScrFI	CCNGG	3 cut(s)	283, 295, 310
SetI	ASST	5 cut(s)	61, 82, 121, 299, 314
Sfr274I	CTCGAG	1 cut(s)	24
SlaI	CTCGAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	6 cut(s)	477, 498, 543, 564, 678, 699
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	2 cut(s)	128, 369
SsiI	CCGC	1 cut(s)	511
SspI	AATATT	1 cut(s)	770
StyD4I	CCNGG	3 cut(s)	281, 293, 308
TaaI	ACNGT	4 cut(s)	148, 324, 382, 396
TaqI	TCGA	1 cut(s)	25
TasI	AATT	2 cut(s)	128, 369
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	274, 387
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	3 cut(s)	59, 77, 630
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	4 cut(s)	518, 561, 735, 762
TspRI	CASTG	2 cut(s)	274, 387
XhoI	CTCGAG	1 cut(s)	24
XmiI	GTMKAC	2 cut(s)	358, 507
XmnI	GAANNNNTTC	2 cut(s)	277, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.