Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021158.1

Orthogroup ID

OG0004191

Physical Location & Seq

Genomic Coordinates Reverse (-)

1254 .. 2256

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021158.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgaggttcttcaagcttgttcagcagcacttggcgtcaggctctgatggtgaagataatggaagttcaaagatttcagaggaggatttggagaccccatttgttgacttcttacagacacggctgcctcccaagataaaatcgtacagatcatatcgcctttctctatctgttacttttcattattctgttttctcccagacattcccaaaaatgggaaaccctccaccaaaattatggcttatcaccctcctcttcctcccttgcttcttcataagcgacgtcgttggagtccaaatcctctccaaatcgaaactcgacaagtgcgagaagacttccgaatccggtgaacttaactgcactaacaagatcgtcctcaacatggccgtccctggcggcgcggtaaaggaacattattttctctctttgaattactgcaatgccgagcttgaaattaatagtgggattgattttcagagtggaggtgaggcttcgattgttgcggaaattgtcgaggtagaggagaattcaagcaagaagatgcaaacttttcgaataccacctgtcctgactgtcaataaatccgcagcttatgccttgtacgagcttacgtacattcgagatgttgcatataagcctgaagagtactatgttaagacccgaaagtgtgagccagatgcagatgcaaaagttgtcaagatatgtgagaggcaaggcaaacaatctagctattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

244

Amino Acids

27.53

Weight (kDa)

6.35

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11720
fragaria_vesca	FvH4_5g01650 FvH4_5g28890
malus_domestica	MD04G1066100.v1.1
prunus_persica	Prupe.5G092400_v2.0.a1 Prupe.5G092400_v2.0.a1 Prupe.8G039400_v2.0.a1 Prupe.8G039500_v2.0.a1 Prupe.8G039500_v2.0.a1
pyrus_communis	pycom04g05950
rosa_chinensis	RchiOBHm_Chr4g0410761 RchiOBHm_Chr7g0199071
rosa_laevigata	RLG00000003818 RLG00000008399
rosa_multiflora	Rmu_sc0009499.1_g000004 Rmu_sc0021158.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257150 Rroxscaffold_5G00355510
rosa_rugosa	Rorug04G0111100 Rorug04G0111200 Rorug07G0052400 Rorug07G0052500
rosa_samantha	Rh4AG162900 Rh4BG161700 Rh4BG162100 Rh4CG175700 Rh4DG158600 Rh7AG175800 Rh7BG179000 Rh7CG184900 Rh7DG178600
rosa_wichuraiana	Rw4G013580 Rw7G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	285
AccII	CGCG	1 cut(s)	401
AciI	CCGC	4 cut(s)	396, 401, 503, 585
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	660
AcyI	GRCGYC	2 cut(s)	35, 282
AfaI	GTAC	4 cut(s)	146, 602, 614, 647
AfiI	CCNNNNNNNGG	3 cut(s)	214, 215, 382
AgsI	TTSAA	5 cut(s)	13, 69, 430, 452, 531
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	5 cut(s)	16, 448, 590, 607, 729
AluI	AGCT	5 cut(s)	16, 448, 590, 607, 729
Alw26I	GTCTC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	3 cut(s)	25, 124, 587
ApoI	RAATTY	1 cut(s)	526
AseI	ATTAAT	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	401
AsuHPI	GGTGA	4 cut(s)	62, 238, 359, 497
AsuII	TTCGAA	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	37, 111, 599
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	2 cut(s)	137, 371
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	726
BisI	GCNGC	4 cut(s)	26, 125, 397, 588
BlsI	GCNGC	4 cut(s)	27, 126, 398, 589
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	1 cut(s)	393
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	531, 667, 673
BpiI	GAAGAC	1 cut(s)	338
Bpu14I	TTCGAA	1 cut(s)	553
BsaAI	YACGTR	1 cut(s)	612
BsaHI	GRCGYC	2 cut(s)	35, 282
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	391
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 215, 382
Bse3DI	GCAATG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	391
BseLI	CCNNNNNNNGG	3 cut(s)	214, 215, 382
BseMI	GCAATG	1 cut(s)	445
BseRI	GAGGAG	3 cut(s)	95, 242, 536
BseXI	GCAGC	3 cut(s)	37, 111, 599
BsgI	GTGCAG	1 cut(s)	343
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	3 cut(s)	214, 215, 382
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	553
Bsp143I	GATC	2 cut(s)	149, 369
BspACI	CCGC	4 cut(s)	396, 401, 503, 585
BspANI	GGCC	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	553
BspTNI	GGTCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	445
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	2 cut(s)	149, 369
BssNI	GRCGYC	2 cut(s)	35, 282
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	2 cut(s)	260, 636
BstACI	GRCGYC	2 cut(s)	35, 282
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstBAI	YACGTR	1 cut(s)	612
BstBI	TTCGAA	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	2 cut(s)	152, 372
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	149, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 593
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstSNI	TACGTA	1 cut(s)	612
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	3 cut(s)	37, 111, 599
BstV2I	GAAGAC	1 cut(s)	338
BstXI	CCANNNNNNTGG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	386
CaiI	CAGNNNCTG	1 cut(s)	44
CfoI	GCGC	1 cut(s)	401
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	4 cut(s)	145, 601, 613, 646
CviAII	CATG	1 cut(s)	382
CviQI	GTAC	4 cut(s)	145, 601, 613, 646
DpnI	GATC	2 cut(s)	151, 371
DpnII	GATC	2 cut(s)	149, 369
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	260, 636
EarI	CTCTTC	2 cut(s)	260, 636
Eco105I	TACGTA	1 cut(s)	612
Eco31I	GGTCTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	391
FaeI	CATG	1 cut(s)	385
FaiI	YATR	9 cut(s)	154, 238, 275, 383, 594, 631, 633, 651, 703
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	1 cut(s)	381
Fnu4HI	GCNGC	4 cut(s)	26, 125, 397, 588
Fsp4HI	GCNGC	4 cut(s)	26, 125, 397, 588
FspBI	CTAG	1 cut(s)	726
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	4 cut(s)	26, 125, 397, 588
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	345
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	2 cut(s)	35, 282
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	2 cut(s)	291, 341
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	4 cut(s)	62, 238, 359, 497
Hpy166II	GTNNAC	2 cut(s)	106, 350
Hpy188I	TCNGA	4 cut(s)	46, 79, 340, 477
Hpy188III	TCNNGA	3 cut(s)	568, 620, 697
Hpy8I	GTNNAC	2 cut(s)	106, 350
Hpy99I	CGWCG	2 cut(s)	284, 287
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	2 cut(s)	282, 611
HpyCH4V	TGCA	6 cut(s)	360, 438, 544, 629, 680, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 593
HpySE526I	ACGT	2 cut(s)	282, 611
Hsp92I	GRCGYC	2 cut(s)	35, 282
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	149, 369
LpnPI	CCDG	9 cut(s)	24, 212, 358, 378, 405, 576, 581, 651, 687
Lsp1109I	GCAGC	3 cut(s)	37, 111, 599
LweI	GCATC	3 cut(s)	531, 667, 673
MaeI	CTAG	1 cut(s)	726
MaeII	ACGT	2 cut(s)	282, 611
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	151, 371
MboI	GATC	2 cut(s)	149, 369
MboII	GAAGA	6 cut(s)	65, 247, 262, 343, 550, 653
MluCI	AATT	5 cut(s)	233, 430, 453, 507, 526
MlyI	GAGTC	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	268
MseI	TTAA	3 cut(s)	354, 456, 654
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	22, 593
NdeII	GATC	2 cut(s)	149, 369
NlaIII	CATG	1 cut(s)	385
NmeAIII	GCCGAG	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	27, 126, 398, 589
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	612
PshBI	ATTAAT	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	44
RsaI	GTAC	4 cut(s)	146, 602, 614, 647
RsaNI	GTAC	4 cut(s)	145, 601, 613, 646
SaqAI	TTAA	3 cut(s)	354, 456, 654
SatI	GCNGC	4 cut(s)	26, 125, 397, 588
Sau3AI	GATC	2 cut(s)	149, 369
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	393
SfaNI	GCATC	3 cut(s)	531, 667, 673
SfuI	TTCGAA	1 cut(s)	553
SnaBI	TACGTA	1 cut(s)	612
Sse9I	AATT	5 cut(s)	233, 430, 453, 507, 526
SsiI	CCGC	4 cut(s)	396, 401, 503, 585
SspMI	CTAG	1 cut(s)	726
StyD4I	CCNGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	2 cut(s)	285, 614
TaqI	TCGA	6 cut(s)	311, 318, 494, 513, 553, 619
TasI	AATT	5 cut(s)	233, 430, 453, 507, 526
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	354, 456, 654
Tru9I	TTAA	3 cut(s)	354, 456, 654
TseI	GCWGC	3 cut(s)	25, 124, 587
TspDTI	ATGAA	2 cut(s)	170, 262
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	234
XspI	CTAG	1 cut(s)	726
ZraI	GACGTC	1 cut(s)	283
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.