Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004191

Physical Location & Seq

Genomic Coordinates Forward (+)

17449117 .. 17450407

Gene Structure 1291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0111100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTCGAGTGGAGTTGCCACTGTTGTAGCATTAGTAGTTGTCTCTGTGATGATTGCTATCATAGTTGTATACAGGAGATATATTCGGGAACGTAGCAGCTCTGATGATCCAGTCTTACATGATCCAAGCTTTTCGACACTCACAATGGACAATTTTCTAAATGATATAGAAAGAGAGAAGCCCATCAGGTTTACTTCTCAACAACTTCAGATTGCAACTGATAACTTCACCAACTTGCTGGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGAAAATTTAGTAATGGAACCCTTGTGGCAGTGAAGGTCCTAAATGGTACCTCGGACAAGGGAATTGAAGAACAATTCATGGCGGAAGTTAGAACCCTTGGCAGGATTCATCATATCAACCTGGTTGGTCTTTATGGTTTCTGCTTTGAGAGACACGTCAGAGCAATTGTTTATGAGTATATGTCAAATGGTTCGCTTGATAAGTTTCTTTTCCATGGAAACAAGATTTTAGGATTCGAAAAGCTTCATGAAATTGCAGTTGGGACAGCTAGAGGGATTGCCTACTTGCACGAAGAATGCCAGCAGCGAATAGTCCACTACGATATAAAACCTGAAAATATTCTTTTGGATGTGAACTTCTTTCCTAAAGTAGCTGATTTTGGTTTGGCCAAGCTGTTCAACAGAGATAAGACTCATATATCAATGACAGGGTGGAGGGGAACTCCTGGTTATGCTGCACCAGAAGTTTGGCTGCAGTGTCCTATAACCCACAAGTGTGATGTGTACAGCTTTGGAATGCTATTATTTGAGATCATAGGCAGAAGAAGGAACCTAGACCTCAATCTTCCGGAGGGTCAAGACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCTGGAGAACTAGGAGAGCTAATGCTAGTTTGTGGCATAGAGGAGAAAGACAGAGAGGCAGCAGAGAGAATGTTAAAGGTAGCTATCTGCTGTGTTCAGTATAGGCCCGAGTTGAGACCTCTAATGAGTGGTGTGGTGAAAATGTTGGAAGGAGAAATTGAGATTCCTAGACCTTCAATTAACCCACTTCAGCACTCGTTGCCAGGCACTCCTGTCATGGTATCGTATAGCACTAGTGTCTTCGACACGGATTCCTCTCATACAATAACTGGTGTTGAAGGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

390

Amino Acids

43.93

Weight (kDa)

6.2

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	76 - 343	3.3e-46	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	78 - 272	7.1e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11720
fragaria_vesca	FvH4_5g01650 FvH4_5g28890
malus_domestica	MD04G1066100.v1.1
prunus_persica	Prupe.5G092400_v2.0.a1 Prupe.5G092400_v2.0.a1 Prupe.8G039400_v2.0.a1 Prupe.8G039500_v2.0.a1 Prupe.8G039500_v2.0.a1
pyrus_communis	pycom04g05950
rosa_chinensis	RchiOBHm_Chr4g0410761 RchiOBHm_Chr7g0199071
rosa_laevigata	RLG00000003818 RLG00000008399
rosa_multiflora	Rmu_sc0009499.1_g000004 Rmu_sc0021158.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257150 Rroxscaffold_5G00355510
rosa_rugosa	Rorug04G0111100 Rorug04G0111200 Rorug07G0052400 Rorug07G0052500
rosa_samantha	Rh4AG162900 Rh4BG161700 Rh4BG162100 Rh4CG175700 Rh4DG158600 Rh7AG175800 Rh7BG179000 Rh7CG184900 Rh7DG178600
rosa_wichuraiana	Rw4G013580 Rw7G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
Acc65I	GGTACC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	69
AccIII	TCCGGA	1 cut(s)	838
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	2 cut(s)	101, 116
AcoI	YGGCCR	1 cut(s)	657
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	2 cut(s)	191, 1058
AfaI	GTAC	2 cut(s)	319, 776
AfiI	CCNNNNNNNGG	2 cut(s)	372, 866
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	5 cut(s)	338, 670, 884, 1062, 1163
AhlI	ACTAGT	1 cut(s)	1118
AjiI	CACGTC	1 cut(s)	427
AjnI	CCWGG	3 cut(s)	390, 715, 1087
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AleI	CACNNNNGTG	1 cut(s)	765
Alw26I	GTCTC	3 cut(s)	46, 415, 994
AlwI	GGATC	2 cut(s)	101, 116
Ama87I	CYCGRG	1 cut(s)	992
Aor13HI	TCCGGA	1 cut(s)	838
AoxI	GGCC	2 cut(s)	657, 989
ApeKI	GCWGC	5 cut(s)	96, 574, 725, 742, 944
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	2 cut(s)	513, 609
Asp718I	GGTACC	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	307, 990
AsuHPI	GGTGA	2 cut(s)	220, 1033
AsuII	TTCGAA	1 cut(s)	507
AvaI	CYCGRG	1 cut(s)	992
AvaII	GGWCC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	659
BanI	GGYRCC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	1117
BbvI	GCAGC	5 cut(s)	108, 586, 712, 729, 956
BccI	CCATC	2 cut(s)	191, 864
BciT130I	CCWGG	3 cut(s)	392, 717, 1089
BcoDI	GTCTC	3 cut(s)	46, 415, 994
BcuI	ACTAGT	1 cut(s)	1118
BfaI	CTAG	6 cut(s)	540, 824, 896, 911, 1053, 1119
BfmI	CTRYAG	1 cut(s)	743
BisI	GCNGC	5 cut(s)	97, 575, 726, 743, 945
BlsI	GCNGC	5 cut(s)	98, 576, 727, 744, 946
Bme1390I	CCNGG	3 cut(s)	392, 717, 1089
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	992
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	2 cut(s)	307, 990
BmiI	GGNNCC	3 cut(s)	289, 319, 821
BmrFI	CCNGG	3 cut(s)	392, 717, 1089
BpiI	GAAGAC	1 cut(s)	1117
BplI	GAGNNNNNCTC	2 cut(s)	697, 729
BpmI	CTGGAG	1 cut(s)	909
Bpu14I	TTCGAA	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	994
BsaJI	CCNNGG	4 cut(s)	321, 367, 484, 860
BsaWI	WCCGGW	1 cut(s)	838
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 866
Bse1I	ACTGG	3 cut(s)	110, 857, 1159
Bse8I	GATNNNNATC	1 cut(s)	56
BseAI	TCCGGA	1 cut(s)	838
BseBI	CCWGG	3 cut(s)	392, 717, 1089
BseDI	CCNNGG	4 cut(s)	321, 367, 484, 860
BseGI	GGATG	3 cut(s)	625, 875, 1172
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	372, 866
BseNI	ACTGG	3 cut(s)	110, 857, 1159
BseRI	GAGGAG	1 cut(s)	941
BseXI	GCAGC	5 cut(s)	108, 586, 712, 729, 956
BseYI	CCCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	711
BshFI	GGCC	2 cut(s)	659, 991
BshNI	GGYRCC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	992
BsiSI	CCGG	1 cut(s)	839
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	2 cut(s)	372, 866
BsmAI	GTCTC	3 cut(s)	46, 415, 994
BsmFI	GGGAC	1 cut(s)	547
BsmI	GAATGC	2 cut(s)	572, 792
BsnI	GGCC	2 cut(s)	659, 991
Bso31I	GGTCTC	1 cut(s)	994
BsoBI	CYCGRG	1 cut(s)	992
Bsp119I	TTCGAA	1 cut(s)	507
Bsp13I	TCCGGA	1 cut(s)	838
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	3 cut(s)	106, 121, 801
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	2 cut(s)	659, 991
BspEI	TCCGGA	1 cut(s)	838
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	3 cut(s)	289, 319, 821
BspMAI	CTGCAG	1 cut(s)	747
BspPI	GGATC	2 cut(s)	101, 116
BspT104I	TTCGAA	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	994
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	3 cut(s)	110, 857, 1159
BssECI	CCNNGG	4 cut(s)	321, 367, 484, 860
BssMI	GATC	3 cut(s)	106, 121, 801
BssNAI	GTATAC	1 cut(s)	70
BssT1I	CCWWGG	3 cut(s)	367, 484, 860
Bst1107I	GTATAC	1 cut(s)	70
Bst2UI	CCWGG	3 cut(s)	392, 717, 1089
Bst4CI	ACNGT	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	1084
BstAUI	TGTACA	1 cut(s)	774
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	572
BstDSI	CCRYGG	1 cut(s)	484
BstF5I	GGATG	3 cut(s)	625, 875, 1172
BstKTI	GATC	3 cut(s)	109, 124, 804
BstMAI	GTCTC	3 cut(s)	46, 415, 994
BstMBI	GATC	3 cut(s)	106, 121, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	1084
BstNI	CCWGG	3 cut(s)	392, 717, 1089
BstSCI	CCNGG	3 cut(s)	390, 715, 1087
BstSFI	CTRYAG	1 cut(s)	743
BstV1I	GCAGC	5 cut(s)	108, 586, 712, 729, 956
BstV2I	GAAGAC	1 cut(s)	1117
BstXI	CCANNNNNNTGG	2 cut(s)	238, 738
BstZ17I	GTATAC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	659, 991
BtgI	CCRYGG	1 cut(s)	484
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	3 cut(s)	625, 875, 1172
BtsI	GCAGTG	2 cut(s)	306, 752
BtsIMutI	CAGTG	3 cut(s)	18, 306, 752
Cac8I	GCNNGC	1 cut(s)	572
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	307, 990
CsiI	ACCWGGT	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	318, 775
CviAII	CATG	5 cut(s)	119, 349, 485, 518, 1102
CviQI	GTAC	2 cut(s)	318, 775
DpnI	GATC	3 cut(s)	108, 123, 803
DpnII	GATC	3 cut(s)	106, 121, 801
EaeI	YGGCCR	1 cut(s)	657
EciI	GGCGGA	1 cut(s)	368
Eco130I	CCWWGG	3 cut(s)	367, 484, 860
Eco31I	GGTCTC	1 cut(s)	994
Eco47I	GGWCC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	191, 1058
Eco88I	CYCGRG	1 cut(s)	992
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	3 cut(s)	390, 715, 1087
EcoT14I	CCWWGG	3 cut(s)	367, 484, 860
ErhI	CCWWGG	3 cut(s)	367, 484, 860
FaeI	CATG	5 cut(s)	122, 352, 488, 521, 1105
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	5 cut(s)	118, 348, 484, 517, 1101
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	5 cut(s)	97, 575, 726, 743, 945
FokI	GGATG	2 cut(s)	632, 882
Fsp4HI	GCNGC	5 cut(s)	97, 575, 726, 743, 945
FspBI	CTAG	6 cut(s)	540, 824, 896, 911, 1053, 1119
GluI	GCNGC	5 cut(s)	97, 575, 726, 743, 945
GsaI	CCCAGC	1 cut(s)	242
GsuI	CTGGAG	1 cut(s)	909
HaeIII	GGCC	2 cut(s)	659, 991
HapII	CCGG	1 cut(s)	839
Hin1II	CATG	5 cut(s)	122, 352, 488, 521, 1105
HindIII	AAGCTT	2 cut(s)	127, 512
HinfI	GANTC	5 cut(s)	376, 504, 682, 1048, 1136
HpaII	CCGG	1 cut(s)	839
HphI	GGTGA	2 cut(s)	220, 1033
Hpy166II	GTNNAC	5 cut(s)	70, 192, 586, 625, 775
Hpy188I	TCNGA	4 cut(s)	103, 210, 325, 431
Hpy188III	TCNNGA	5 cut(s)	86, 246, 518, 839, 848
Hpy8I	GTNNAC	5 cut(s)	70, 192, 586, 625, 775
HpyAV	CCTTC	5 cut(s)	298, 810, 1028, 1068, 1157
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	91, 426
HpyCH4V	TGCA	5 cut(s)	215, 527, 559, 728, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1084
HpySE526I	ACGT	2 cut(s)	91, 426
Hsp92II	CATG	5 cut(s)	122, 352, 488, 521, 1105
Kpn2I	TCCGGA	1 cut(s)	838
KpnI	GGTACC	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	106, 121, 801
Lsp1109I	GCAGC	5 cut(s)	108, 586, 712, 729, 956
MabI	ACCWGGT	1 cut(s)	390
MaeI	CTAG	6 cut(s)	540, 824, 896, 911, 1053, 1119
MaeII	ACGT	2 cut(s)	91, 426
MalI	GATC	3 cut(s)	108, 123, 803
MboI	GATC	3 cut(s)	106, 121, 801
MboII	GAAGA	6 cut(s)	350, 575, 825, 827, 886, 1117
MfeI	CAATTG	1 cut(s)	435
MlsI	TGGCCA	1 cut(s)	659
MluCI	AATT	8 cut(s)	151, 275, 333, 344, 435, 522, 1041, 1062
MluNI	TGGCCA	1 cut(s)	659
MlyI	GAGTC	1 cut(s)	676
MmeI	TCCRAC	1 cut(s)	1011
Mox20I	TGGCCA	1 cut(s)	659
MroI	TCCGGA	1 cut(s)	838
MroXI	GAANNNNTTC	2 cut(s)	513, 609
MscI	TGGCCA	1 cut(s)	659
MseI	TTAA	2 cut(s)	959, 1065
MslI	CAYNNNNRTG	1 cut(s)	765
Msp20I	TGGCCA	1 cut(s)	659
MspI	CCGG	1 cut(s)	839
MspR9I	CCNGG	3 cut(s)	392, 717, 1089
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	2 cut(s)	572, 792
MvaI	CCWGG	3 cut(s)	392, 717, 1089
MwoI	GCNNNNNNNGC	1 cut(s)	1084
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	3 cut(s)	106, 121, 801
NlaIII	CATG	5 cut(s)	122, 352, 488, 521, 1105
NlaIV	GGNNCC	3 cut(s)	289, 319, 821
NspV	TTCGAA	1 cut(s)	507
OliI	CACNNNNGTG	1 cut(s)	765
PagI	TCATGA	1 cut(s)	517
PctI	GAATGC	2 cut(s)	572, 792
PdmI	GAANNNNTTC	2 cut(s)	513, 609
PfeI	GAWTC	4 cut(s)	376, 504, 1048, 1136
PkrI	GCNGC	5 cut(s)	98, 576, 727, 744, 946
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
PpuMI	RGGWCCY	1 cut(s)	307
PsiI	TTATAA	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	3 cut(s)	390, 715, 1087
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	3 cut(s)	390, 715, 1087
PspN4I	GGNNCC	3 cut(s)	289, 319, 821
PspPI	GGNCC	2 cut(s)	307, 990
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	747
RsaI	GTAC	2 cut(s)	319, 776
RsaNI	GTAC	2 cut(s)	318, 775
RseI	CAYNNNNRTG	1 cut(s)	765
SaqAI	TTAA	2 cut(s)	959, 1065
SatI	GCNGC	5 cut(s)	97, 575, 726, 743, 945
Sau3AI	GATC	3 cut(s)	106, 121, 801
Sau96I	GGNCC	2 cut(s)	307, 990
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	3 cut(s)	392, 717, 1089
SexAI	ACCWGGT	1 cut(s)	390
SfcI	CTRYAG	1 cut(s)	743
SfuI	TTCGAA	1 cut(s)	507
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	765
SpeI	ACTAGT	1 cut(s)	1118
Sse9I	AATT	8 cut(s)	151, 275, 333, 344, 435, 522, 1041, 1062
SsiI	CCGC	1 cut(s)	353
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	6 cut(s)	540, 824, 896, 911, 1053, 1119
StyD4I	CCNGG	3 cut(s)	390, 715, 1087
StyI	CCWWGG	3 cut(s)	367, 484, 860
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	94, 429
TaqI	TCGA	4 cut(s)	5, 134, 507, 1128
TasI	AATT	8 cut(s)	151, 275, 333, 344, 435, 522, 1041, 1062
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	4 cut(s)	376, 504, 1048, 1136
Tru1I	TTAA	2 cut(s)	959, 1065
Tru9I	TTAA	2 cut(s)	959, 1065
TscAI	CASTG	3 cut(s)	25, 306, 752
TseI	GCWGC	5 cut(s)	96, 574, 725, 742, 944
TspDTI	ATGAA	4 cut(s)	337, 368, 506, 534
TspGWI	ACGGA	1 cut(s)	1148
TspRI	CASTG	3 cut(s)	25, 306, 752
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	867
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	2 cut(s)	513, 609
XspI	CTAG	6 cut(s)	540, 824, 896, 911, 1053, 1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.