Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004191

Physical Location & Seq

Genomic Coordinates Forward (+)

3737936 .. 3738984

Gene Structure 1049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0052400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAAACCCCAGAAGGAACAGCCAGAGCTCAGAGAACCCATTTCATGGTCAAAGCCAAAGCCGAAGCCTAAGCCTAAACCTAAACCAAAGCGTTTCATGGTCATCACTTGTACACTTTCTGAAGAAGCCCCATGCTTTGCCTTGTCTGCTCTCAATCTTCCTTCTGCTTACATGGGTCTCTCTCAGGCTCCAGCACTCCTCGTCCTCTCCTCATTCTCATAATATCAATACACCATTACAGAAGAACATCAAGGACGACAGCAAGGCCAATCTCGTTAGGTTCGGTTCTGGGTTCCCCTCTCGGATTGCAAAAGATAAGCGGGGATGGTTGCTCGACCCCATTTCCCTTGCCCAACAATCTGGCATTTTGGGTGGAGCTGTGATTTGTGCTTCAATCCATCTTGGAGAAATCCGGCCTGGTGCTTTAAGGGGAAACCAGAGACACCATTCTTGTAATGAAACGTTTGTCATATGGGGAGCAGAAACAAGGTTTAGGCTGGAGAACGATGAGGTAGATGATAAAGGTTACGCTGAAGTCATCATTGGTGCAGATGAGGTTGCTGTTGCAGCTAGTCGAAGCGGAACTGCTCATGCTTTAATAAACATAGATCCGGTTCGGACCACATACTTCATAGGGTGCCAGGACAGTGTCATAGATTATAACAGCTCAACTACTGATTTTAATGTCTGGGAAAGTCTTAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

236

Amino Acids

26.08

Weight (kDa)

8.39

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11720
fragaria_vesca	FvH4_5g01650 FvH4_5g28890
malus_domestica	MD04G1066100.v1.1
prunus_persica	Prupe.5G092400_v2.0.a1 Prupe.5G092400_v2.0.a1 Prupe.8G039400_v2.0.a1 Prupe.8G039500_v2.0.a1 Prupe.8G039500_v2.0.a1
pyrus_communis	pycom04g05950
rosa_chinensis	RchiOBHm_Chr4g0410761 RchiOBHm_Chr7g0199071
rosa_laevigata	RLG00000003818 RLG00000008399
rosa_multiflora	Rmu_sc0009499.1_g000004 Rmu_sc0021158.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257150 Rroxscaffold_5G00355510
rosa_rugosa	Rorug04G0111100 Rorug04G0111200 Rorug07G0052400 Rorug07G0052500
rosa_samantha	Rh4AG162900 Rh4BG161700 Rh4BG162100 Rh4CG175700 Rh4DG158600 Rh7AG175800 Rh7BG179000 Rh7CG184900 Rh7DG178600
rosa_wichuraiana	Rw4G013580 Rw7G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	639
AccB7I	CCANNNNNTGG	1 cut(s)	47
AciI	CCGC	2 cut(s)	322, 582
AclI	AACGTT	1 cut(s)	464
AclWI	GGATC	1 cut(s)	605
AcuI	CTGAAG	2 cut(s)	143, 555
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	47
AflII	CTTAAG	1 cut(s)	701
AgsI	TTSAA	1 cut(s)	396
AjnI	CCWGG	2 cut(s)	418, 642
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	4 cut(s)	30, 380, 572, 669
AluI	AGCT	4 cut(s)	30, 380, 572, 669
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	184, 436
AlwI	GGATC	1 cut(s)	605
AoxI	GGCC	2 cut(s)	267, 416
ApeKI	GCWGC	1 cut(s)	569
AspS9I	GGNCC	1 cut(s)	621
AvaII	GGWCC	1 cut(s)	621
BanI	GGYRCC	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	2 cut(s)	321, 408
BciT130I	CCWGG	2 cut(s)	420, 644
BcoDI	GTCTC	2 cut(s)	184, 436
BfaI	CTAG	1 cut(s)	573
BfrI	CTTAAG	1 cut(s)	701
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
Bme1390I	CCNGG	2 cut(s)	420, 644
Bme18I	GGWCC	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	3 cut(s)	191, 296, 641
BmrFI	CCNGG	2 cut(s)	420, 644
BpmI	CTGGAG	2 cut(s)	176, 521
Bpu10I	CCTNAGC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	420, 644
BseGI	GGATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	45, 199
BseRI	GAGGAG	2 cut(s)	190, 201
BseXI	GCAGC	1 cut(s)	581
BsgI	GTGCAG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	269, 418
BshNI	GGYRCC	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	415, 614
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	184, 436
BsnI	GGCC	2 cut(s)	269, 418
Bso31I	GGTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	610
BspACI	CCGC	2 cut(s)	322, 582
BspANI	GGCC	2 cut(s)	269, 418
BspCNI	CTCAG	2 cut(s)	44, 198
BspLI	GGNNCC	3 cut(s)	191, 296, 641
BspPI	GGATC	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	639
BspTI	CTTAAG	1 cut(s)	701
BspTNI	GGTCTC	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	112
BssMI	GATC	1 cut(s)	610
Bst2UI	CCWGG	2 cut(s)	420, 644
Bst4CI	ACNGT	1 cut(s)	650
BstAFI	CTTAAG	1 cut(s)	701
BstAUI	TGTACA	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	31, 71, 185
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	1 cut(s)	613
BstMAI	GTCTC	2 cut(s)	184, 436
BstMBI	GATC	1 cut(s)	610
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 569
BstNI	CCWGG	2 cut(s)	420, 644
BstSCI	CCNGG	2 cut(s)	418, 642
BstV1I	GCAGC	1 cut(s)	581
BstX2I	RGATCY	1 cut(s)	610
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	610
BsuRI	GGCC	2 cut(s)	269, 418
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	655
Cfr13I	GGNCC	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	5 cut(s)	47, 99, 134, 174, 593
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	3 cut(s)	31, 71, 185
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	621
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	143, 555
EcoICRI	GAGCTC	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	418, 642
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	5 cut(s)	50, 102, 137, 177, 596
FatI	CATG	5 cut(s)	46, 98, 133, 173, 592
FauI	CCCGC	1 cut(s)	315
FauNDI	CATATG	1 cut(s)	473
Fnu4HI	GCNGC	1 cut(s)	570
FokI	GGATG	1 cut(s)	339
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	1 cut(s)	573
GluI	GCNGC	1 cut(s)	570
GsuI	CTGGAG	2 cut(s)	176, 521
HaeIII	GGCC	2 cut(s)	269, 418
HapII	CCGG	2 cut(s)	415, 614
Hin1II	CATG	5 cut(s)	50, 102, 137, 177, 596
HpaII	CCGG	2 cut(s)	415, 614
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	4 cut(s)	34, 123, 306, 621
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	2 cut(s)	9, 173
HpyCH4III	ACNGT	1 cut(s)	650
HpyCH4IV	ACGT	1 cut(s)	464
HpyCH4V	TGCA	3 cut(s)	311, 551, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 569
HpyF3I	CTNAG	3 cut(s)	31, 71, 185
HpySE526I	ACGT	1 cut(s)	464
Hsp92II	CATG	5 cut(s)	50, 102, 137, 177, 596
Kzo9I	GATC	1 cut(s)	610
LmnI	GCTCC	3 cut(s)	195, 377, 479
Lsp1109I	GCAGC	1 cut(s)	581
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	464
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	1 cut(s)	612
MboI	GATC	1 cut(s)	610
MboII	GAAGA	3 cut(s)	136, 151, 256
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	32
MnlI	CCTC	6 cut(s)	211, 217, 222, 310, 505, 550
MseI	TTAA	4 cut(s)	428, 599, 684, 702
MspCI	CTTAAG	1 cut(s)	701
MspI	CCGG	2 cut(s)	415, 614
MspR9I	CCNGG	2 cut(s)	420, 644
MvaI	CCWGG	2 cut(s)	420, 644
MwoI	GCNNNNNNNGC	2 cut(s)	148, 569
NdeI	CATATG	1 cut(s)	473
NdeII	GATC	1 cut(s)	610
NlaIII	CATG	5 cut(s)	50, 102, 137, 177, 596
NlaIV	GGNNCC	3 cut(s)	191, 296, 641
PflFI	GACNNNGTC	1 cut(s)	650
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	571
PsiI	TTATAA	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	32
Psp1406I	AACGTT	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	418, 642
PspGI	CCWGG	2 cut(s)	418, 642
PspN4I	GGNNCC	3 cut(s)	191, 296, 641
PspPI	GGNCC	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	610
PsyI	GACNNNGTC	1 cut(s)	650
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	4 cut(s)	428, 599, 684, 702
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	1 cut(s)	610
Sau96I	GGNCC	1 cut(s)	621
ScrFI	CCNGG	2 cut(s)	420, 644
SduI	GDGCHC	1 cut(s)	32
SinI	GGWCC	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
SsiI	CCGC	2 cut(s)	322, 582
SspMI	CTAG	1 cut(s)	573
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	418, 642
TaaI	ACNGT	1 cut(s)	650
TaiI	ACGT	1 cut(s)	467
TaqI	TCGA	2 cut(s)	336, 577
TatI	WGTACW	1 cut(s)	112
Tru1I	TTAA	4 cut(s)	428, 599, 684, 702
Tru9I	TTAA	4 cut(s)	428, 599, 684, 702
TscAI	CASTG	1 cut(s)	655
TseI	GCWGC	1 cut(s)	569
TspDTI	ATGAA	4 cut(s)	35, 87, 474, 622
TspRI	CASTG	1 cut(s)	655
Tth111I	GACNNNGTC	1 cut(s)	650
Van91I	CCANNNNNTGG	1 cut(s)	47
Vha464I	CTTAAG	1 cut(s)	701
VpaK11BI	GGWCC	1 cut(s)	621
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.