Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004191

Physical Location & Seq

Genomic Coordinates Reverse (-)

51549910 .. 51556204

Gene Structure 6295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGATTGATTTACAGAGTGGAGGTGAGGCTTCAATTGTTGCCGAAATTGTCGAGGTAGAGGAGAATTCAAGCAAGAAGATGCAAACTTTTCGAGTACCGCCTGTCCTGACTGTCAATAAATCCGCGGCTTATGCCTTGTACGAGCTTACGTACATTCGAGATGTTGCATATAAGCCTGAAGAGTACTATGTTAAGACTCGAAAGTGTGAGCCAGATGCAGATGCAAAAGTTGTGAAGATATTTTGTTCTGTTTTTCGTAGCCAATGTGCTGTCCTTGTGGGCCTCAGCGGCGGGTACCTTCATCATGTGGAAGCGTTTGAAGTGCTTGTAGGTCCTGAAAACAGAACAGCAATATCCAATGATAAGTTTTTGCGAGCTAATCTTATTGGAGACTTTGTTGGATACACAAATATTCCTTCATTTGAGGATTTTTATCTTGTAATTCCGAGGCAGAATGCAGGGACTCATTCGTTTTCCATAGGAGTCACAGAAGTCATTAATACAAATCTCTTGATAGAACTAAGTGCTGATGACGTAGATTATGTCTACCAAAGGAGTCCTGGGAAAATCTTAAGCATCAATATCCCAACATTTGAGGCCCTTACTCAATTTGGAACTGCTACAATCACAGCAAAGAATACTGGTGAAGTGGAAGCATCCTATTGCTTAACGAAGGGACTTTTTGATCCTTTATATGACTGGTGGGATGATCATTTCTATAGTCCGAGCACCAAGAATACAAGACACAGAATTAATGTAGATCACCGACATGTTCATGTCCATAAACATCATGGGCATGAAGCAAGGCAGCACAACTATGGCACTCATCATAAAAGAAAAAGCACTCACAATGATCACAAGCATAGCCACTTTCAAAGAAGTAGTGACTACCGTTACGACCTTCACCATGTCCATAAGGATAAGCGCAAGCATGGCCGAAGAAGGAGTTCAAGTGTTATGCAGAAAGTTGATGAGAACACTGGATACCACGGCCAGAAAAAACAAAGGAGAACAACAAAAGACTATTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

344

Amino Acids

39.52

Weight (kDa)

8.78

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAP2-GCS1	PF10699	5 - 72	9.6e-13	Male gamete fusion factor
HAP2-GCS1	PF10699	100 - 151	8e-10	Male gamete fusion factor
HAP2-GCS1	PF10699	151 - 224	4e-21	Male gamete fusion factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11720
fragaria_vesca	FvH4_5g01650 FvH4_5g28890
malus_domestica	MD04G1066100.v1.1
prunus_persica	Prupe.5G092400_v2.0.a1 Prupe.5G092400_v2.0.a1 Prupe.8G039400_v2.0.a1 Prupe.8G039500_v2.0.a1 Prupe.8G039500_v2.0.a1
pyrus_communis	pycom04g05950
rosa_chinensis	RchiOBHm_Chr4g0410761 RchiOBHm_Chr7g0199071
rosa_laevigata	RLG00000003818 RLG00000008399
rosa_multiflora	Rmu_sc0009499.1_g000004 Rmu_sc0021158.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257150 Rroxscaffold_5G00355510
rosa_rugosa	Rorug04G0111100 Rorug04G0111200 Rorug07G0052400 Rorug07G0052500
rosa_samantha	Rh4AG162900 Rh4BG161700 Rh4BG162100 Rh4CG175700 Rh4DG158600 Rh7AG175800 Rh7BG179000 Rh7CG184900 Rh7DG178600
rosa_wichuraiana	Rw4G013580 Rw7G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	1 cut(s)	125
AciI	CCGC	5 cut(s)	98, 123, 125, 288, 291
AclWI	GGATC	1 cut(s)	680
AcoI	YGGCCR	2 cut(s)	934, 991
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	5 cut(s)	96, 140, 152, 185, 296
AflII	CTTAAG	1 cut(s)	571
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	6 cut(s)	33, 69, 320, 875, 951, 1029
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	2 cut(s)	145, 377
AluI	AGCT	2 cut(s)	145, 377
Alw21I	GWGCWC	1 cut(s)	731
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	680
AoxI	GGCC	4 cut(s)	280, 597, 934, 991
ApeKI	GCWGC	1 cut(s)	808
ApoI	RAATTY	1 cut(s)	64
AseI	ATTAAT	2 cut(s)	498, 753
Asp700I	GAANNNNTTC	1 cut(s)	946
Asp718I	GGTACC	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	927
AspS9I	GGNCC	3 cut(s)	280, 332, 598
AsuHPI	GGTGA	4 cut(s)	35, 656, 755, 896
AvaII	GGWCC	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	731
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	820
BceAI	ACGGC	1 cut(s)	1006
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	561
BciVI	GTATCC	2 cut(s)	395, 977
BclI	TGATCA	2 cut(s)	709, 853
BcoDI	GTCTC	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	718
BfrI	CTTAAG	1 cut(s)	571
BfuI	GTATCC	2 cut(s)	395, 977
BglI	GCCNNNNNGGC	1 cut(s)	288
BisI	GCNGC	3 cut(s)	126, 289, 809
BlsI	GCNGC	3 cut(s)	127, 290, 810
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	3 cut(s)	280, 332, 598
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	5 cut(s)	69, 205, 211, 585, 665
Bpu10I	CCTNAGC	1 cut(s)	284
BsaAI	YACGTR	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	4 cut(s)	123, 446, 560, 988
BsaXI	ACNNNNNCTCC	4 cut(s)	381, 411, 937, 967
Bse1I	ACTGG	3 cut(s)	646, 704, 985
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	4 cut(s)	123, 446, 560, 988
BseGI	GGATG	2 cut(s)	656, 712
BseJI	GATNNNNATC	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	298
BseNI	ACTGG	3 cut(s)	646, 704, 985
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	820
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	4 cut(s)	282, 599, 936, 993
BshNI	GGYRCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	731
BslFI	GGGAC	2 cut(s)	475, 690
BsmAI	GTCTC	1 cut(s)	384
BsmFI	GGGAC	2 cut(s)	475, 690
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	4 cut(s)	282, 599, 936, 993
Bsp1286I	GDGCHC	1 cut(s)	731
Bsp143I	GATC	4 cut(s)	685, 709, 760, 853
BspACI	CCGC	5 cut(s)	98, 123, 125, 288, 291
BspANI	GGCC	4 cut(s)	282, 599, 936, 993
BspCNI	CTCAG	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	680
BspT107I	GGYRCC	1 cut(s)	294
BspTI	CTTAAG	1 cut(s)	571
BsrI	ACTGG	3 cut(s)	646, 704, 985
BssECI	CCNNGG	4 cut(s)	123, 446, 560, 988
BssMI	GATC	4 cut(s)	685, 709, 760, 853
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	112, 893
Bst6I	CTCTTC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	571
BstBAI	YACGTR	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	375, 929
BstDEI	CTNAG	2 cut(s)	284, 521
BstDSI	CCRYGG	2 cut(s)	123, 988
BstF5I	GGATG	2 cut(s)	656, 712
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	927
BstKTI	GATC	4 cut(s)	688, 712, 763, 856
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	4 cut(s)	685, 709, 760, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 288, 933
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	1 cut(s)	718
BstSNI	TACGTA	1 cut(s)	150
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	820
BsuI	GTATCC	2 cut(s)	395, 977
BsuRI	GGCC	4 cut(s)	282, 599, 936, 993
BtgI	CCRYGG	2 cut(s)	123, 988
BtsCI	GGATG	2 cut(s)	656, 712
BtsIMutI	CAGTG	1 cut(s)	978
Cac8I	GCNNGC	2 cut(s)	375, 929
CfoI	GCGC	1 cut(s)	927
Cfr13I	GGNCC	3 cut(s)	280, 332, 598
Cfr42I	CCGCGG	1 cut(s)	126
Csp6I	GTAC	5 cut(s)	95, 139, 151, 184, 295
CviAII	CATG	7 cut(s)	305, 770, 776, 791, 797, 908, 932
CviQI	GTAC	5 cut(s)	95, 139, 151, 184, 295
DdeI	CTNAG	2 cut(s)	284, 521
DpnI	GATC	4 cut(s)	687, 711, 762, 855
DpnII	GATC	4 cut(s)	685, 709, 760, 853
EaeI	YGGCCR	2 cut(s)	934, 991
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco105I	TACGTA	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	2 cut(s)	332, 598
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	559
FaeI	CATG	7 cut(s)	308, 773, 779, 794, 800, 911, 935
FaqI	GGGAC	2 cut(s)	475, 690
FatI	CATG	7 cut(s)	304, 769, 775, 790, 796, 907, 931
FauI	CCCGC	1 cut(s)	284
FbaI	TGATCA	2 cut(s)	709, 853
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	126, 289, 809
FokI	GGATG	2 cut(s)	643, 719
Fsp4HI	GCNGC	3 cut(s)	126, 289, 809
GlaI	GCGC	1 cut(s)	926
GluI	GCNGC	3 cut(s)	126, 289, 809
HaeIII	GGCC	4 cut(s)	282, 599, 936, 993
HhaI	GCGC	1 cut(s)	927
Hin1II	CATG	7 cut(s)	308, 773, 779, 794, 800, 911, 935
Hin6I	GCGC	1 cut(s)	925
HinP1I	GCGC	1 cut(s)	925
HinfI	GANTC	4 cut(s)	196, 463, 483, 556
HphI	GGTGA	4 cut(s)	35, 656, 755, 896
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	2 cut(s)	447, 726
Hpy188III	TCNNGA	4 cut(s)	106, 158, 335, 511
Hpy8I	GTNNAC	1 cut(s)	547
HpyAV	CCTTC	5 cut(s)	308, 426, 667, 911, 936
HpyCH4III	ACNGT	2 cut(s)	112, 893
HpyCH4IV	ACGT	2 cut(s)	149, 534
HpyCH4V	TGCA	6 cut(s)	82, 167, 218, 224, 458, 961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 288, 933
HpyF3I	CTNAG	2 cut(s)	284, 521
HpySE526I	ACGT	2 cut(s)	149, 534
Hsp92II	CATG	7 cut(s)	308, 773, 779, 794, 800, 911, 935
HspAI	GCGC	1 cut(s)	925
KpnI	GGTACC	1 cut(s)	298
Ksp22I	TGATCA	2 cut(s)	709, 853
KspI	CCGCGG	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	685, 709, 760, 853
Lsp1109I	GCAGC	1 cut(s)	820
LweI	GCATC	5 cut(s)	69, 205, 211, 585, 665
MaeII	ACGT	2 cut(s)	149, 534
MaeIII	GTNAC	3 cut(s)	484, 884, 893
MalI	GATC	4 cut(s)	687, 711, 762, 855
MboI	GATC	4 cut(s)	685, 709, 760, 853
MboII	GAAGA	4 cut(s)	88, 191, 247, 951
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	731
MluCI	AATT	6 cut(s)	33, 45, 64, 441, 608, 750
MlyI	GAGTC	4 cut(s)	190, 457, 492, 565
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	8 cut(s)	14, 19, 46, 52, 293, 418, 441, 589
MroXI	GAANNNNTTC	1 cut(s)	946
MseI	TTAA	5 cut(s)	192, 498, 572, 668, 753
MslI	CAYNNNNRTG	4 cut(s)	768, 774, 795, 816
MspA1I	CMGCKG	2 cut(s)	125, 288
MspCI	CTTAAG	1 cut(s)	571
MspR9I	CCNGG	1 cut(s)	561
MunI	CAATTG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	561
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	131, 288, 933
NdeII	GATC	4 cut(s)	685, 709, 760, 853
NlaIII	CATG	7 cut(s)	308, 773, 779, 794, 800, 911, 935
NlaIV	GGNNCC	1 cut(s)	296
NmuCI	GTSAC	2 cut(s)	484, 884
NspI	RCATGY	1 cut(s)	773
PciI	ACATGT	1 cut(s)	769
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	946
PkrI	GCNGC	3 cut(s)	127, 290, 810
PleI	GAGTC	4 cut(s)	190, 457, 491, 564
PpsI	GAGTC	4 cut(s)	190, 457, 491, 564
Ppu21I	YACGTR	1 cut(s)	150
PpuMI	RGGWCCY	1 cut(s)	332
PscI	ACATGT	1 cut(s)	769
PshBI	ATTAAT	2 cut(s)	498, 753
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	3 cut(s)	280, 332, 598
PspPPI	RGGWCCY	1 cut(s)	332
PsrI	GAACNNNNNNTAC	2 cut(s)	968, 1000
RsaI	GTAC	5 cut(s)	96, 140, 152, 185, 296
RsaNI	GTAC	5 cut(s)	95, 139, 151, 184, 295
RseI	CAYNNNNRTG	4 cut(s)	768, 774, 795, 816
SacII	CCGCGG	1 cut(s)	126
SaqAI	TTAA	5 cut(s)	192, 498, 572, 668, 753
SatI	GCNGC	3 cut(s)	126, 289, 809
Sau3AI	GATC	4 cut(s)	685, 709, 760, 853
Sau96I	GGNCC	3 cut(s)	280, 332, 598
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	4 cut(s)	190, 457, 492, 565
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	731
SetI	ASST	9 cut(s)	25, 57, 147, 152, 300, 334, 379, 537, 903
SfaNI	GCATC	5 cut(s)	69, 205, 211, 585, 665
SfcI	CTRYAG	1 cut(s)	718
Sfr303I	CCGCGG	1 cut(s)	126
SgrBI	CCGCGG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	4 cut(s)	768, 774, 795, 816
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
SnaBI	TACGTA	1 cut(s)	150
Sse9I	AATT	6 cut(s)	33, 45, 64, 441, 608, 750
SsiI	CCGC	5 cut(s)	98, 123, 125, 288, 291
SspI	AATATT	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	2 cut(s)	112, 893
TaiI	ACGT	2 cut(s)	152, 537
TaqI	TCGA	4 cut(s)	51, 91, 157, 199
TasI	AATT	6 cut(s)	33, 45, 64, 441, 608, 750
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	2 cut(s)	128, 291
Tru1I	TTAA	5 cut(s)	192, 498, 572, 668, 753
Tru9I	TTAA	5 cut(s)	192, 498, 572, 668, 753
TscAI	CASTG	1 cut(s)	985
TseFI	GTSAC	2 cut(s)	484, 884
TseI	GCWGC	1 cut(s)	808
Tsp45I	GTSAC	2 cut(s)	484, 884
TspDTI	ATGAA	4 cut(s)	290, 408, 764, 813
TspRI	CASTG	1 cut(s)	985
Vha464I	CTTAAG	1 cut(s)	571
VpaK11BI	GGWCC	1 cut(s)	332
VspI	ATTAAT	2 cut(s)	498, 753
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	773
XcmI	CCANNNNNNNNNTGG	2 cut(s)	557, 788
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	946
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.