Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004191

Physical Location & Seq

Genomic Coordinates Forward (+)

29126529 .. 29132059

Gene Structure 5531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG161700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTGGTTCTTCAAGCTTGTTCAACAGCACTTGGCTTTAGGCTCTAATGGTGAAGATAATGAAAGTTCAAAGATTTCAGAGGAGGATTTGGAGACCCCATTTGTTGACTTCTTACAGACACGGCTGCCTCCCAAGATAAAATCGTACATATTATATCGCTTTTCTCTATCTACATTCCCAAAAATGGGAAACCCTCCACCAAAATTATGGCTTATCACCCTCCTCTTCCTCCCTTGCTTCATAAGAGACGTCGTTGGAGTCCAGATCCTCTCCAAATCGAAACTCGAGAAGTGCGAGAAGACTTCCGAATCTGTGGTAGCGACTCTGGAAGTACCAATAGTTCTACGAATAAGGAGGATACATATTGATTGCTTGGATTATGAAGTCTTAGGGGATGACATGAGAATTGGAGAGCGGATTGGGCAAGGATGTTGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005968 GO:0008150 GO:0009889 GO:0009893 GO:0010556 GO:0010604 GO:0017016 GO:0017137 GO:0019222 GO:0019899 GO:0031267 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051020 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1902494 GO:1990234 GO:2000112 GO:2000539 GO:2000541

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

146

Amino Acids

16.74

Weight (kDa)

6.13

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11720
fragaria_vesca	FvH4_5g01650 FvH4_5g28890
malus_domestica	MD04G1066100.v1.1
prunus_persica	Prupe.5G092400_v2.0.a1 Prupe.5G092400_v2.0.a1 Prupe.8G039400_v2.0.a1 Prupe.8G039500_v2.0.a1 Prupe.8G039500_v2.0.a1
pyrus_communis	pycom04g05950
rosa_chinensis	RchiOBHm_Chr4g0410761 RchiOBHm_Chr7g0199071
rosa_laevigata	RLG00000003818 RLG00000008399
rosa_multiflora	Rmu_sc0009499.1_g000004 Rmu_sc0021158.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257150 Rroxscaffold_5G00355510
rosa_rugosa	Rorug04G0111100 Rorug04G0111200 Rorug07G0052400 Rorug07G0052500
rosa_samantha	Rh4AG162900 Rh4BG161700 Rh4BG162100 Rh4CG175700 Rh4DG158600 Rh7AG175800 Rh7BG179000 Rh7CG184900 Rh7DG178600
rosa_wichuraiana	Rw4G013580 Rw7G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AccBSI	CCGCTC	1 cut(s)	415
AciI	CCGC	1 cut(s)	415
AclWI	GGATC	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	146, 333
AfiI	CCNNNNNNNGG	2 cut(s)	184, 185
AgsI	TTSAA	3 cut(s)	13, 23, 69
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	86, 240
AlwI	GGATC	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	62, 208
AvaI	CYCGRG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	111
BceAI	ACGGC	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	86, 240
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 185
BseGI	GGATG	2 cut(s)	400, 434
BseLI	CCNNNNNNNGG	2 cut(s)	184, 185
BseRI	GAGGAG	2 cut(s)	95, 212
BseXI	GCAGC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	184, 185
BsmAI	GTCTC	2 cut(s)	86, 240
BsmBI	CGTCTC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	1 cut(s)	415
BspPI	GGATC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	415
BssMI	GATC	1 cut(s)	264
BssNI	GRCGYC	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	400, 434
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	2 cut(s)	86, 240
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	264
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	400, 434
Csp6I	GTAC	2 cut(s)	145, 332
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	5 cut(s)	16, 35, 42, 124, 211
CviKI_1	RGCY	5 cut(s)	16, 35, 42, 124, 211
CviQI	GTAC	2 cut(s)	145, 332
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	284
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	1 cut(s)	403
FaiI	YATR	7 cut(s)	149, 154, 208, 242, 363, 381, 401
FatI	CATG	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	403
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	3 cut(s)	258, 308, 322
HphI	GGTGA	2 cut(s)	62, 208
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	79, 307
Hpy188III	TCNNGA	3 cut(s)	262, 286, 326
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	1 cut(s)	388
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	264
LpnPI	CCDG	2 cut(s)	275, 311
Lsp1109I	GCAGC	1 cut(s)	111
MaeII	ACGT	1 cut(s)	249
MalI	GATC	1 cut(s)	266
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	1 cut(s)	264
MboII	GAAGA	3 cut(s)	65, 217, 310
MflI	RGATCY	1 cut(s)	264
MluCI	AATT	2 cut(s)	203, 405
MlyI	GAGTC	2 cut(s)	267, 316
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	9 cut(s)	73, 76, 138, 204, 230, 233, 239, 278, 348
MseI	TTAA	1 cut(s)	439
MwoI	GCNNNNNNNGC	1 cut(s)	421
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	1 cut(s)	403
PaeR7I	CTCGAG	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	2 cut(s)	266, 316
PpsI	GAGTC	2 cut(s)	266, 316
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	2 cut(s)	146, 333
RsaNI	GTAC	2 cut(s)	145, 332
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	264
SchI	GAGTC	2 cut(s)	267, 316
SetI	ASST	2 cut(s)	18, 252
Sfr274I	CTCGAG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	203, 405
SsiI	CCGC	1 cut(s)	415
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	278, 285
TasI	AATT	2 cut(s)	203, 405
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	75, 229, 396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	204
XhoI	CTCGAG	1 cut(s)	284
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.