pycom02g00550

Signal recognition particle receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002654
Physical Location & Seq
Forward (+)
324664 .. 325020
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g00550.1

Sequence Viewer

Length: 357 bp
ATGAGTTTTCGGAGATTTATCGATCCAAAAAGGACAGTGTATGCTGACTTTGATGAAACTTTTCGACAACTGAAGAAGGAGGCTGAGGCTAGGGCTGAGGAATTGAAGAAGTCGAAGTGGGTGGGTAAGCCTGTGAACAACAAGAAGCAAGGGCAGGTGCAGAAGGGGGGACTTGGAGGAGACAAGAAAAAGAATGAAGGTGGTTTGGCAAGTGACGGTGGGGATGGTGATAATATGAAAGGCCGTAAATTGGAGAATGGGATCGATCTAACGGTAATCACGTGGATTTCAAAGAATCTAATGGTACTGCTAACGGAAAAGAAAATACTAGTTCCAATCTTGGGGCTTTTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP-alpha_N SRP54 SRP54_N

Protein Analysis

119

Amino Acids

13.21

Weight (kDa)

9.76

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP-alpha_N PF04086 14 - 73 4.7e-06 Signal recognition particle, alpha subunit, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 1 cut(s) 145
AclWI GGATC 2 cut(s) 17, 269
AcuI CTGAAG 1 cut(s) 92
AcvI CACGTG 1 cut(s) 282
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 250, 341
AgsI TTSAA 2 cut(s) 106, 291
AhlI ACTAGT 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 2 cut(s) 17, 269
AoxI GGCC 1 cut(s) 241
Asp700I GAANNNNTTC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 239
BbrPI CACGTG 1 cut(s) 282
BbvCI CCTCAGC 2 cut(s) 84, 96
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 174
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 2 cut(s) 90, 329
BfuAI ACCTGC 1 cut(s) 145
Bpu10I CCTNAGC 2 cut(s) 84, 96
Bsa29I ATCGAT 2 cut(s) 21, 264
BsaAI YACGTR 1 cut(s) 282
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 341
BseCI ATCGAT 2 cut(s) 21, 264
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 250, 341
BseMII CTCAG 2 cut(s) 75, 87
BseRI GAGGAG 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 179
BshFI GGCC 1 cut(s) 243
BshVI ATCGAT 2 cut(s) 21, 264
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 250, 341
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 1 cut(s) 243
Bsp143I GATC 3 cut(s) 22, 261, 265
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 76, 88
BspDI ATCGAT 2 cut(s) 21, 264
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 2 cut(s) 17, 269
BssMI GATC 3 cut(s) 22, 261, 265
Bst4CI ACNGT 3 cut(s) 37, 218, 274
BstBAI YACGTR 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 84, 96
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 3 cut(s) 25, 264, 268
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 3 cut(s) 22, 261, 265
Bsu15I ATCGAT 2 cut(s) 21, 264
BsuRI GGCC 1 cut(s) 243
BsuTUI ATCGAT 2 cut(s) 21, 264
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 145
ClaI ATCGAT 2 cut(s) 21, 264
Csp6I GTAC 1 cut(s) 305
CviJI RGCY 6 cut(s) 83, 89, 95, 130, 243, 346
CviKI_1 RGCY 6 cut(s) 83, 89, 95, 130, 243, 346
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 2 cut(s) 84, 96
DpnI GATC 3 cut(s) 24, 263, 267
DpnII GATC 3 cut(s) 22, 261, 265
Eco57I CTGAAG 1 cut(s) 92
Eco72I CACGTG 1 cut(s) 282
FaiI YATR 2 cut(s) 42, 236
FaqI GGGAC 1 cut(s) 183
FokI GGATG 1 cut(s) 236
FspBI CTAG 2 cut(s) 90, 329
HaeIII GGCC 1 cut(s) 243
HinfI GANTC 1 cut(s) 295
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 3 cut(s) 70, 157, 191
HpyCH4III ACNGT 3 cut(s) 37, 218, 274
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 84, 96
HpySE526I ACGT 1 cut(s) 281
Kzo9I GATC 3 cut(s) 22, 261, 265
LpnPI CCDG 2 cut(s) 140, 144
MaeI CTAG 2 cut(s) 90, 329
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 212
MalI GATC 3 cut(s) 24, 263, 267
MboI GATC 3 cut(s) 22, 261, 265
MboII GAAGA 2 cut(s) 85, 118
MluCI AATT 2 cut(s) 101, 248
MnlI CCTC 4 cut(s) 73, 79, 91, 170
MroXI GAANNNNTTC 1 cut(s) 60
NdeII GATC 3 cut(s) 22, 261, 265
NmuCI GTSAC 1 cut(s) 212
PaqCI CACCTGC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 295
PmaCI CACGTG 1 cut(s) 282
PmlI CACGTG 1 cut(s) 282
Ppu21I YACGTR 1 cut(s) 282
PspCI CACGTG 1 cut(s) 282
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
Sau3AI GATC 3 cut(s) 22, 261, 265
SetI ASST 3 cut(s) 159, 202, 284
SpeI ACTAGT 1 cut(s) 328
Sse9I AATT 2 cut(s) 101, 248
SspMI CTAG 2 cut(s) 90, 329
TaaI ACNGT 3 cut(s) 37, 218, 274
TaiI ACGT 1 cut(s) 284
TaqI TCGA 4 cut(s) 21, 64, 113, 264
TasI AATT 2 cut(s) 101, 248
TfiI GAWTC 1 cut(s) 295
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 69, 210, 251
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 2 cut(s) 90, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.