Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002654

Physical Location & Seq

Genomic Coordinates Reverse (-)

47266239 .. 47267914

Gene Structure 1676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACCAAGAATGTGGCAGCAATGGAAGAAGCTCTTGTTCGTATATTAACCCCTAGGCGCTCTACTGATATACTGAGGGACGTGCATGCTGCCAAGGAGCAAAGGAAACCTTATGTTGTTGTTTTTGTTGGTGTCAATGGAGTCGGGAAATCTACTAATTTGGCCAAGGTTGCTTATTGGCTTCAGCAGCATCAGGTCAGTGTTATGATGGCTGCCTGTGATACATTCCAATCAGGGGCTGTTGAGCAACTGCGTACTCATGCGCGTAGACTCCAGATCCCTATTTTTGAAAAGGGATATGAGAAAGATCCTGCTGTTGTTGCTAAGGAAGCAATCCAGGAGGCCACACTGAATGGTTCTGATGTGGTTCTTGTTGATACAGCTGGTCTAATGCAGGATAATGAACCATTAATGAGGGCACTGTCAAAGCTTATCTACATTAACAATCCAGATCTTGTCTTGTTTGTTGGAGAGGCATTGGTTGGGAATGATGCTGTTGATCAGCTTTCAAAGTTTAATCAGGTTGGAGCTGCACTGTCCATGGTTTACATATCTGGAGCCCCAGTCATGTTTGTTGGGTGTGGGCAGTCCTATACAGACCTCAAAAAGTTGAATGTGAAATCAATTGTGAAGACTCTCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP-alpha_N SRP54 SRP54_N

Protein Analysis

215

Amino Acids

23.54

Weight (kDa)

8.8

Isoelectric Point (pI)

24.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54	PF00448	38 - 174	7.7e-41	SRP54-type protein, GTPase domain
SRP54	PF00448	175 - 214	2.4e-06	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30600 AT4G30600
fragaria_vesca	FvH4_1g00830 FvH4_2g11040
malus_domestica	MD02G1006600.v1.1 MD15G1151700.v1.1
prunus_persica	Prupe.7G264100_v2.0.a1
pyrus_communis	pycom02g00550 pycom02g00560 pycom15g13570
rosa_chinensis	RchiOBHm_Chr2g0085561 RchiOBHm_Chr7g0224871 RchiOBHm_Chr7g0224891
rosa_laevigata	RLG00000015699
rosa_multiflora	Rmu_co8208878.1_g000001 Rmu_sc0000307.1_g000005 Rmu_sc0013957.1_g000001 Rmu_sc0014614.1_g000004 Rmu_sc0024179.1_g000002 Rmu_ssc0000347.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155270 Rroxscaffold_3G00234310
rosa_rugosa	Rorug01G0461300 Rorug01G0461300 Rorug01G0461300 Rorug02G0380200 Rorug05G0211800 Rorug07G0226700
rosa_samantha	Rh2AG010200 Rh2BG010800 Rh2CG011700 Rh2DG012700 Rh7AG376500 Rh7AG376700 Rh7BG362200 Rh7CG395200 Rh7DG372200 Rh7DG372300
rosa_wichuraiana	Rw2G000910 Rw7G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	268
AccII	CGCG	1 cut(s)	265
AclWI	GGATC	2 cut(s)	271, 302
AcoI	YGGCCR	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	290, 510, 613
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	5 cut(s)	32, 383, 430, 505, 530
AluI	AGCT	5 cut(s)	32, 383, 430, 505, 530
AlwI	GGATC	2 cut(s)	271, 302
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	162, 342
ApeKI	GCWGC	5 cut(s)	17, 89, 187, 212, 530
AseI	ATTAAT	1 cut(s)	410
AspA2I	CCTAGG	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	60, 265
AvrII	CCTAGG	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	638
BbvI	GCAGC	5 cut(s)	29, 76, 199, 199, 517
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	338
BclI	TGATCA	1 cut(s)	499
BfaI	CTAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	61
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	5 cut(s)	18, 90, 188, 213, 531
BlnI	CCTAGG	1 cut(s)	53
BlsI	GCNGC	5 cut(s)	19, 91, 189, 214, 532
Bme1390I	CCNGG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	1 cut(s)	338
BmrI	ACTGGG	1 cut(s)	557
BmsI	GCATC	2 cut(s)	199, 481
BmuI	ACTGGG	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	638
BpmI	CTGGAG	2 cut(s)	257, 576
Bpu10I	CCTNAGC	1 cut(s)	324
BsaJI	CCNNGG	4 cut(s)	53, 93, 165, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	563
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	4 cut(s)	53, 93, 165, 540
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	563
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	5 cut(s)	29, 76, 199, 199, 517
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	164, 344
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	164, 344
Bsp1286I	GDGCHC	2 cut(s)	421, 562
Bsp143I	GATC	4 cut(s)	276, 307, 451, 499
Bsp19I	CCATGG	1 cut(s)	540
BspANI	GGCC	2 cut(s)	164, 344
BspCNI	CTCAG	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	271, 302
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	563
BssECI	CCNNGG	4 cut(s)	53, 93, 165, 540
BssMI	GATC	4 cut(s)	276, 307, 451, 499
BssT1I	CCWWGG	4 cut(s)	53, 93, 165, 540
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	423, 537
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	74, 324
BstDSI	CCRYGG	1 cut(s)	540
BstFNI	CGCG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	60, 265
BstKTI	GATC	4 cut(s)	279, 310, 454, 502
BstMBI	GATC	4 cut(s)	276, 307, 451, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 187, 320, 329
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	421
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	5 cut(s)	29, 76, 199, 199, 517
BstV2I	GAAGAC	1 cut(s)	638
BstX2I	RGATCY	3 cut(s)	276, 307, 451
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	3 cut(s)	276, 307, 451
BsuRI	GGCC	2 cut(s)	164, 344
BtgI	CCRYGG	1 cut(s)	540
BtrI	CACGTC	1 cut(s)	82
BtsIMutI	CAGTG	4 cut(s)	205, 347, 419, 533
Cac8I	GCNNGC	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	239
CfoI	GCGC	2 cut(s)	60, 265
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	4 cut(s)	86, 260, 541, 568
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	2 cut(s)	74, 324
DpnI	GATC	4 cut(s)	278, 309, 453, 501
DpnII	GATC	4 cut(s)	276, 307, 451, 499
EaeI	YGGCCR	1 cut(s)	162
Eco130I	CCWWGG	4 cut(s)	53, 93, 165, 540
Eco24I	GRGCYC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	4 cut(s)	53, 93, 165, 540
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	4 cut(s)	53, 93, 165, 540
FaeI	CATG	4 cut(s)	89, 263, 544, 571
FalI	AAGNNNNNCTT	4 cut(s)	18, 50, 94, 126
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	4 cut(s)	85, 259, 540, 567
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	268
Fnu4HI	GCNGC	5 cut(s)	18, 90, 188, 213, 531
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	5 cut(s)	18, 90, 188, 213, 531
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	2 cut(s)	59, 264
GluI	GCNGC	5 cut(s)	18, 90, 188, 213, 531
GsuI	CTGGAG	2 cut(s)	257, 576
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	164, 344
HhaI	GCGC	2 cut(s)	60, 265
Hin1II	CATG	4 cut(s)	89, 263, 544, 571
Hin6I	GCGC	2 cut(s)	58, 263
HinP1I	GCGC	2 cut(s)	58, 263
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	3 cut(s)	141, 270, 634
Hpy166II	GTNNAC	2 cut(s)	269, 547
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	5 cut(s)	145, 274, 449, 555, 640
Hpy8I	GTNNAC	2 cut(s)	269, 547
HpyCH4III	ACNGT	2 cut(s)	423, 537
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	85, 394, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 187, 320, 329
HpyF3I	CTNAG	2 cut(s)	74, 324
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	89, 263, 544, 571
HspAI	GCGC	2 cut(s)	58, 263
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	4 cut(s)	276, 307, 451, 499
LmnI	GCTCC	3 cut(s)	97, 527, 557
Lsp1109I	GCAGC	5 cut(s)	29, 76, 199, 199, 517
LweI	GCATC	2 cut(s)	199, 481
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	81
MalI	GATC	4 cut(s)	278, 309, 453, 501
MboI	GATC	4 cut(s)	276, 307, 451, 499
MboII	GAAGA	2 cut(s)	38, 643
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	3 cut(s)	276, 307, 451
MhlI	GDGCHC	2 cut(s)	421, 562
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	2 cut(s)	157, 624
MluNI	TGGCCA	1 cut(s)	164
MlyI	GAGTC	3 cut(s)	150, 264, 628
MmeI	TCCRAC	2 cut(s)	448, 505
MnlI	CCTC	5 cut(s)	69, 334, 408, 466, 611
Mox20I	TGGCCA	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	4 cut(s)	47, 410, 441, 516
Msp20I	TGGCCA	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	338
MunI	CAATTG	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	4 cut(s)	170, 187, 320, 329
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	4 cut(s)	276, 307, 451, 499
NlaIII	CATG	4 cut(s)	89, 263, 544, 571
NlaIV	GGNNCC	1 cut(s)	559
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	5 cut(s)	19, 91, 189, 214, 532
PleI	GAGTC	3 cut(s)	149, 264, 628
PpsI	GAGTC	3 cut(s)	149, 264, 628
PshBI	ATTAAT	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	3 cut(s)	276, 307, 451
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	4 cut(s)	47, 410, 441, 516
SatI	GCNGC	5 cut(s)	18, 90, 188, 213, 531
Sau3AI	GATC	4 cut(s)	276, 307, 451, 499
SchI	GAGTC	3 cut(s)	150, 264, 628
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	2 cut(s)	421, 562
SfaNI	GCATC	2 cut(s)	199, 481
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	157, 624
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	4 cut(s)	53, 93, 165, 540
TaaI	ACNGT	2 cut(s)	423, 537
TaiI	ACGT	1 cut(s)	84
TasI	AATT	2 cut(s)	157, 624
Tru1I	TTAA	4 cut(s)	47, 410, 441, 516
Tru9I	TTAA	4 cut(s)	47, 410, 441, 516
TscAI	CASTG	4 cut(s)	205, 354, 426, 540
TseI	GCWGC	5 cut(s)	17, 89, 187, 212, 530
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	4 cut(s)	205, 354, 426, 540
VspI	ATTAAT	1 cut(s)	410
XceI	RCATGY	1 cut(s)	89
XmaJI	CCTAGG	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	268
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.