Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024179.1

Orthogroup ID

OG0002654

Physical Location & Seq

Genomic Coordinates Reverse (-)

1446 .. 1893

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024179.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 448 bp

tgattttgatgaaactttccggcagctcaggaaggaggccgaggcacctgctgatgagttgaagaagtcgaagcaggtgggcaagcctgtgagtaatggtaggaagcaagggcagctgcaaaagagtggacttggaagagagaagaagaataatgaaggtggtggtggtgatggtgatagtgtgaagggcagtaaattggagaatggaatatccaatggtggtcatgttgttgtcagggaatctaatgtaggtggtactgctaatggaaaagagaatacttttgatgtaaataagcttaaatctagatctaaggttgggaagaagaaggaaaaaacagctacccttgatagcaagggctccaaggctgagctgagaaggaagttggatgttggtgtcgaaccgattcttcagtttcactttgaacatttgcaagggagatgctggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP-alpha_N SRP54 SRP54_N

Protein Analysis

148

Amino Acids

16.14

Weight (kDa)

9.77

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30600 AT4G30600
fragaria_vesca	FvH4_1g00830 FvH4_2g11040
malus_domestica	MD02G1006600.v1.1 MD15G1151700.v1.1
prunus_persica	Prupe.7G264100_v2.0.a1
pyrus_communis	pycom02g00550 pycom02g00560 pycom15g13570
rosa_chinensis	RchiOBHm_Chr2g0085561 RchiOBHm_Chr7g0224871 RchiOBHm_Chr7g0224891
rosa_laevigata	RLG00000015699
rosa_multiflora	Rmu_co8208878.1_g000001 Rmu_sc0000307.1_g000005 Rmu_sc0013957.1_g000001 Rmu_sc0014614.1_g000004 Rmu_sc0024179.1_g000002 Rmu_ssc0000347.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155270 Rroxscaffold_3G00234310
rosa_rugosa	Rorug01G0461300 Rorug01G0461300 Rorug01G0461300 Rorug02G0380200 Rorug05G0211800 Rorug07G0226700
rosa_samantha	Rh2AG010200 Rh2BG010800 Rh2CG011700 Rh2DG012700 Rh7AG376500 Rh7AG376700 Rh7BG362200 Rh7CG395200 Rh7DG372200 Rh7DG372300
rosa_wichuraiana	Rw2G000910 Rw7G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	56, 65
Acc36I	ACCTGC	2 cut(s)	56, 65
AccB1I	GGYRCC	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	257
AgsI	TTSAA	2 cut(s)	62, 423
AluBI	AGCT	5 cut(s)	26, 116, 296, 339, 371
AluI	AGCT	5 cut(s)	26, 116, 296, 339, 371
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	3 cut(s)	23, 113, 116
Asp700I	GAANNNNTTC	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	180, 186
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	35, 103, 125
BccI	CCATC	1 cut(s)	165
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BfaI	CTAG	1 cut(s)	304
BfuAI	ACCTGC	2 cut(s)	56, 65
BglII	AGATCT	1 cut(s)	306
BisI	GCNGC	3 cut(s)	24, 114, 117
BlpI	GCTNAGC	1 cut(s)	367
BlsI	GCNGC	3 cut(s)	25, 115, 118
BmiI	GGNNCC	2 cut(s)	46, 359
BmsI	GCATC	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	40, 361
BseDI	CCNNGG	2 cut(s)	40, 361
BseGI	GGATG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	41, 358, 363
BseXI	GCAGC	3 cut(s)	35, 103, 125
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	20
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	306
Bsp1720I	GCTNAGC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	3 cut(s)	40, 359, 364
BspLI	GGNNCC	2 cut(s)	46, 359
BspMI	ACCTGC	2 cut(s)	56, 65
BspT107I	GGYRCC	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	40, 361
BssMI	GATC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	4 cut(s)	27, 310, 367, 372
BstF5I	GGATG	1 cut(s)	392
BstKTI	GATC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	306
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	35, 103, 125
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	392
BveI	ACCTGC	2 cut(s)	56, 65
Cac8I	GCNNGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	9 cut(s)	26, 39, 86, 116, 296, 339, 358, 366, 371
CviKI_1	RGCY	9 cut(s)	26, 39, 86, 116, 296, 339, 358, 366, 371
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	4 cut(s)	27, 310, 367, 372
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	1 cut(s)	228
FaiI	YATR	1 cut(s)	226
FatI	CATG	1 cut(s)	224
Fnu4HI	GCNGC	3 cut(s)	24, 114, 117
FokI	GGATG	1 cut(s)	399
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	3 cut(s)	24, 114, 117
FspBI	CTAG	1 cut(s)	304
GluI	GCNGC	3 cut(s)	24, 114, 117
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	2 cut(s)	240, 404
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	180, 186
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188III	TCNNGA	2 cut(s)	29, 304
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	5 cut(s)	26, 150, 179, 320, 370
HpyCH4V	TGCA	2 cut(s)	119, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	4 cut(s)	27, 310, 367, 372
Hsp92II	CATG	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	306
LmnI	GCTCC	1 cut(s)	363
LpnPI	CCDG	7 cut(s)	14, 33, 60, 61, 100, 221, 428
Lsp1109I	GCAGC	3 cut(s)	35, 103, 125
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	1 cut(s)	304
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	7 cut(s)	74, 148, 155, 158, 332, 335, 399
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	2 cut(s)	29, 35
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	1 cut(s)	298
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	1 cut(s)	306
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	2 cut(s)	46, 359
NmeAIII	GCCGAG	1 cut(s)	65
PaqCI	CACCTGC	2 cut(s)	56, 65
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	240, 404
PkrI	GCNGC	3 cut(s)	25, 115, 118
PspN4I	GGNNCC	2 cut(s)	46, 359
PsuI	RGATCY	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	298
SatI	GCNGC	3 cut(s)	24, 114, 117
Sau3AI	GATC	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	1 cut(s)	429
Sse9I	AATT	1 cut(s)	195
SspMI	CTAG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	361
TaqI	TCGA	2 cut(s)	69, 397
TasI	AATT	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	240, 404
Tru1I	TTAA	1 cut(s)	298
Tru9I	TTAA	1 cut(s)	298
TseI	GCWGC	3 cut(s)	23, 113, 116
TspDTI	ATGAA	2 cut(s)	25, 169
XbaI	TCTAGA	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.