Rh7DG372200

Signal recognition particle receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002654
Physical Location & Seq
Reverse (-)
50405735 .. 50413314
7580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG372200.1

Sequence Viewer

Length: 621 bp
ATGACGAAGAGAGAGCTCTTGAGACCTTTCTTATTCTCCAAATTGTTGCATGCAACTGGCAAGGGAAACTTGGAGAGGTCAGATCTGGAACCAGCTTTAAAAGCTCTGAAGGATAGGCTCATGACCAAGAATGTGGCAGCAATGGAAGAAGCTCTTGTTCGTATATTAACCCCTAGGCGCTCTACTGATATACTGAGGGACGTGCATGCTGCCAAGGAGCTTATGTTGTTGTTTTTGTTGGTTGCTTATTGGCTTCAGCAGCATCAGGTCAGTGTTATGATGGCTGCCTGTGATACATTCCGATCAGGGGCTGTTGAGCAACTGCGTACTCATGCGCGTAGACTCCAGATCCCTATTTTTGAAAAGGGATATGAGAAAGATCCTGCTGTTGTTGCTAAGGAAGCAATCCAGGAGGCCACACTGAGTGGTTCTGATGTGGTTCTTGTTGATACAGCTGGTCGAATGCAGGATAATGAACCATTAATGAGGGCACTGTCAAAGCTTATGTACATTAACAATCCAGATCTTGTCTTGTTTGTTGGAGAGGCATTGGTTGGGAATGATCCTGTTGATCAGCTTTCAAAGTTTAATCAGGTTGGAGCTGCACTGTCCGTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP-alpha_N SRP54 SRP54_N

Protein Analysis

206

Amino Acids

23.0

Weight (kDa)

7.86

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54 PF00448 81 - 199 2.8e-32 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 340
AccII CGCG 1 cut(s) 337
AclWI GGATC 3 cut(s) 343, 374, 557
AcuI CTGAAG 2 cut(s) 128, 239
AdeI CACNNNGTG 1 cut(s) 425
AfaI GTAC 2 cut(s) 328, 509
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 362, 582
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 9 cut(s) 16, 95, 104, 152, 220, 455, 502, 577, 602
AluI AGCT 9 cut(s) 16, 95, 104, 152, 220, 455, 502, 577, 602
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 3 cut(s) 343, 374, 557
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 1 cut(s) 414
ApeKI GCWGC 5 cut(s) 137, 209, 259, 284, 602
AseI ATTAAT 1 cut(s) 482
AspA2I CCTAGG 1 cut(s) 173
AspLEI GCGC 2 cut(s) 180, 337
AvrII CCTAGG 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 5 cut(s) 149, 196, 271, 271, 589
BccI CCATC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 410
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 181
BglII AGATCT 2 cut(s) 82, 523
BisI GCNGC 5 cut(s) 138, 210, 260, 285, 603
BlnI CCTAGG 1 cut(s) 173
BlsI GCNGC 5 cut(s) 139, 211, 261, 286, 604
Bme1390I CCNGG 1 cut(s) 410
BmgBI CACGTC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 3 cut(s) 173, 213, 612
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 3 cut(s) 173, 213, 612
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 185, 413
BseNI ACTGG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 5 cut(s) 149, 196, 271, 271, 589
BsgI GTGCAG 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 18
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 468
BsnI GGCC 1 cut(s) 416
Bso31I GGTCTC 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 18, 493
Bsp1407I TGTACA 1 cut(s) 507
Bsp143I GATC 7 cut(s) 82, 302, 348, 379, 523, 562, 571
BspANI GGCC 1 cut(s) 416
BspCNI CTCAG 2 cut(s) 186, 414
BspFNI CGCG 1 cut(s) 337
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 3 cut(s) 343, 374, 557
BspTNI GGTCTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 507
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 3 cut(s) 173, 213, 612
BssMI GATC 7 cut(s) 82, 302, 348, 379, 523, 562, 571
BssT1I CCWWGG 2 cut(s) 173, 213
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 495, 609
Bst6I CTCTTC 1 cut(s) 2
BstAUI TGTACA 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 51, 207
BstDEI CTNAG 3 cut(s) 194, 396, 422
BstDSI CCRYGG 1 cut(s) 612
BstFNI CGCG 1 cut(s) 337
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 2 cut(s) 180, 337
BstKTI GATC 7 cut(s) 85, 305, 351, 382, 526, 565, 574
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 7 cut(s) 82, 302, 348, 379, 523, 562, 571
BstMWI GCNNNNNNNGC 4 cut(s) 101, 259, 392, 401
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 2 cut(s) 53, 209
BstSCI CCNGG 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 493
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 5 cut(s) 149, 196, 271, 271, 589
BstX2I RGATCY 4 cut(s) 82, 348, 379, 523
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 4 cut(s) 82, 348, 379, 523
BsuRI GGCC 1 cut(s) 416
BtgI CCRYGG 1 cut(s) 612
BtrI CACGTC 1 cut(s) 202
BtsIMutI CAGTG 4 cut(s) 277, 419, 491, 605
Cac8I GCNNGC 2 cut(s) 51, 207
CaiI CAGNNNCTG 1 cut(s) 311
CciI TCATGA 1 cut(s) 120
CfoI GCGC 2 cut(s) 180, 337
Csp6I GTAC 2 cut(s) 327, 508
CviAII CATG 4 cut(s) 50, 121, 206, 332
CviQI GTAC 2 cut(s) 327, 508
DdeI CTNAG 3 cut(s) 194, 396, 422
DpnI GATC 7 cut(s) 84, 304, 350, 381, 525, 564, 573
DpnII GATC 7 cut(s) 82, 302, 348, 379, 523, 562, 571
DraI TTTAAA 1 cut(s) 99
DraIII CACNNNGTG 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 173, 213
Eco24I GRGCYC 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 128, 239
EcoICRI GAGCTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 2 cut(s) 173, 213
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 2 cut(s) 173, 213
FaeI CATG 4 cut(s) 53, 124, 209, 335
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 138, 170
FaqI GGGAC 1 cut(s) 212
FatI CATG 4 cut(s) 49, 120, 205, 331
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 5 cut(s) 138, 210, 260, 285, 603
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 5 cut(s) 138, 210, 260, 285, 603
FspBI CTAG 1 cut(s) 174
GlaI GCGC 2 cut(s) 179, 336
GluI GCNGC 5 cut(s) 138, 210, 260, 285, 603
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 1 cut(s) 416
HhaI GCGC 2 cut(s) 180, 337
Hin1II CATG 4 cut(s) 53, 124, 209, 335
Hin6I GCGC 2 cut(s) 178, 335
HinP1I GCGC 2 cut(s) 178, 335
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 1 cut(s) 342
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 4 cut(s) 82, 108, 302, 433
Hpy188III TCNNGA 5 cut(s) 19, 86, 121, 346, 521
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 495, 609
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 5 cut(s) 49, 53, 205, 466, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 259, 392, 401
HpyF3I CTNAG 3 cut(s) 194, 396, 422
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 4 cut(s) 53, 124, 209, 335
HspAI GCGC 2 cut(s) 178, 335
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 7 cut(s) 82, 302, 348, 379, 523, 562, 571
LmnI GCTCC 2 cut(s) 217, 599
Lsp1109I GCAGC 5 cut(s) 149, 196, 271, 271, 589
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 201
MalI GATC 7 cut(s) 84, 304, 350, 381, 525, 564, 573
MboI GATC 7 cut(s) 82, 302, 348, 379, 523, 562, 571
MboII GAAGA 2 cut(s) 19, 158
MflI RGATCY 4 cut(s) 82, 348, 379, 523
MhlI GDGCHC 2 cut(s) 18, 493
MluCI AATT 1 cut(s) 41
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 2 cut(s) 520, 577
MnlI CCTC 5 cut(s) 69, 189, 406, 480, 538
MseI TTAA 6 cut(s) 98, 167, 482, 513, 588, 619
MspA1I CMGCKG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 468
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 4 cut(s) 101, 259, 392, 401
NdeII GATC 7 cut(s) 82, 302, 348, 379, 523, 562, 571
NlaIII CATG 4 cut(s) 53, 124, 209, 335
NlaIV GGNNCC 1 cut(s) 90
NspI RCATGY 2 cut(s) 53, 209
PaeI GCATGC 2 cut(s) 53, 209
PagI TCATGA 1 cut(s) 120
PctI GAATGC 1 cut(s) 468
PfoI TCCNGGA 1 cut(s) 408
PkrI GCNGC 5 cut(s) 139, 211, 261, 286, 604
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PshBI ATTAAT 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 4 cut(s) 82, 348, 379, 523
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 328, 509
RsaNI GTAC 2 cut(s) 327, 508
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 6 cut(s) 98, 167, 482, 513, 588, 619
SatI GCNGC 5 cut(s) 138, 210, 260, 285, 603
Sau3AI GATC 7 cut(s) 82, 302, 348, 379, 523, 562, 571
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 2 cut(s) 18, 493
SfaNI GCATC 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
SphI GCATGC 2 cut(s) 53, 209
Sse9I AATT 1 cut(s) 41
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 2 cut(s) 173, 213
TaaI ACNGT 2 cut(s) 495, 609
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 460
TasI AATT 1 cut(s) 41
TatI WGTACW 1 cut(s) 507
Tru1I TTAA 6 cut(s) 98, 167, 482, 513, 588, 619
Tru9I TTAA 6 cut(s) 98, 167, 482, 513, 588, 619
TscAI CASTG 4 cut(s) 277, 426, 498, 612
TseI GCWGC 5 cut(s) 137, 209, 259, 284, 602
TspDTI ATGAA 1 cut(s) 489
TspGWI ACGGA 1 cut(s) 601
TspRI CASTG 4 cut(s) 277, 426, 498, 612
VspI ATTAAT 1 cut(s) 482
XceI RCATGY 2 cut(s) 53, 209
XmaJI CCTAGG 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.