Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002654

Physical Location & Seq

Genomic Coordinates Forward (+)

20672664 .. 20674508

Gene Structure 1845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0226700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTTCACAGTGAATGCCAAGAAGTATTTTACGATGACAATGGTTTCATCCCCAATATTGAGTTTGCGAGTGTGATCAAACCTTCCCATTGTGAAGGCAGAGATGGCCCAGGAGCTCGAAAGCGAAATTCGAGTGTGTGTTTACTGTTTAGTGAAGTTGGTGTGGTTAAAGAAGATGGGTTTTCGATGCCTGTGAACCCCAGCACCCAAGAAACCTTGGGTCATCGTTTCATAGAGATTAATTCTCGTCAGGAAGGCGCACTTGCTAGGAGCAAGAGAGATGGATACAAGTTTGGTAACTGCAAGATATCAGTAAGCCTGTATGCTGCCTTTGGCAGTTTAGTTGCTACACTTGACATGGGGACTTATTTAGAGACTAATGCATCCGTTTGTGGGACCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP-alpha_N SRP54 SRP54_N

Protein Analysis

134

Amino Acids

14.61

Weight (kDa)

5.57

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30600 AT4G30600
fragaria_vesca	FvH4_1g00830 FvH4_2g11040
malus_domestica	MD02G1006600.v1.1 MD15G1151700.v1.1
prunus_persica	Prupe.7G264100_v2.0.a1
pyrus_communis	pycom02g00550 pycom02g00560 pycom15g13570
rosa_chinensis	RchiOBHm_Chr2g0085561 RchiOBHm_Chr7g0224871 RchiOBHm_Chr7g0224891
rosa_laevigata	RLG00000015699
rosa_multiflora	Rmu_co8208878.1_g000001 Rmu_sc0000307.1_g000005 Rmu_sc0013957.1_g000001 Rmu_sc0014614.1_g000004 Rmu_sc0024179.1_g000002 Rmu_ssc0000347.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155270 Rroxscaffold_3G00234310
rosa_rugosa	Rorug01G0461300 Rorug01G0461300 Rorug01G0461300 Rorug02G0380200 Rorug05G0211800 Rorug07G0226700
rosa_samantha	Rh2AG010200 Rh2BG010800 Rh2CG011700 Rh2DG012700 Rh7AG376500 Rh7AG376700 Rh7BG362200 Rh7CG395200 Rh7DG372200 Rh7DG372300
rosa_wichuraiana	Rw2G000910 Rw7G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	393
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	127
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	107, 396
AvaII	GGWCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	98, 170, 275
BciT130I	CCWGG	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	278
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	2 cut(s)	107, 396
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	177, 392
BsaJI	CCNNGG	2 cut(s)	109, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	109, 216
BseGI	GGATG	2 cut(s)	48, 383
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	397
BssECI	CCNNGG	2 cut(s)	109, 216
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	11, 147
BstF5I	GGATG	2 cut(s)	48, 383
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	48, 383
BtsIMutI	CAGTG	1 cut(s)	16
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	107, 396
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	3 cut(s)	108, 116, 318
CviKI_1	RGCY	3 cut(s)	108, 116, 318
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	361
FaiI	YATR	4 cut(s)	233, 324, 359, 403
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	1 cut(s)	357
FbaI	TGATCA	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	35, 370
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	1 cut(s)	327
GsaI	CCCAGC	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
Hpy166II	GTNNAC	3 cut(s)	7, 143, 196
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	3 cut(s)	7, 143, 196
HpyAV	CCTTC	3 cut(s)	89, 93, 248
HpyCH4III	ACNGT	2 cut(s)	11, 147
HpyCH4V	TGCA	2 cut(s)	303, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	113, 270
LpnPI	CCDG	6 cut(s)	96, 123, 204, 214, 236, 332
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	177, 392
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	127, 241
Mph1103I	ATGCAT	1 cut(s)	385
MseI	TTAA	2 cut(s)	168, 240
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	397
NsiI	ATGCAT	1 cut(s)	385
PctI	GAATGC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	396
PshBI	ATTAAT	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	2 cut(s)	107, 396
PspPPI	RGGWCCY	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	168, 240
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	107, 396
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	4 cut(s)	85, 118, 218, 401
SfaNI	GCATC	2 cut(s)	177, 392
SinI	GGWCC	1 cut(s)	396
Sse9I	AATT	2 cut(s)	127, 241
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	11, 147
TaqI	TCGA	3 cut(s)	118, 131, 185
TasI	AATT	2 cut(s)	127, 241
Tru1I	TTAA	2 cut(s)	168, 240
Tru9I	TTAA	2 cut(s)	168, 240
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	37, 220
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	396
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	127
XspI	CTAG	1 cut(s)	267
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.