RchiOBHm_Chr7g0224891

Signal recognition particle receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002654
Physical Location & Seq
Reverse (-)
47289984 .. 47290684
701 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20138

Sequence Viewer

Length: 645 bp
ATGGTCAAGCACCAATTCTCACAGGTTTATGATCCGAAGAAGACGACTGTGTATAATGATTTTGATGAAACTTTCCGGCAGCTCAGGAAGGAGGCCGAGGCACGTGCTGATGAGTTGAAGAAGTCGAAGCAGGTGGGGAAGCCTGTGAGTAATGGTAGGAAGCAAGGGCAGCTGCAAAAGAGTGGACTTGGAAGAGAGAAGAAGAATAATGAAGGTGGTGATGGTGATAGTGTGAAGGGCCGTGGTACTGCTAATGGAAAAGAGAATACTAGTTCCAATCTTGGGGCTTTTGATGTAAATAAGCTTAAATCTAGATCTAAGGTTGGGAAGAAGAAGGAAAAAACAGCTACCCTTGATAGCAAGGGCTCCAAGGCTGAGCTGAAAAAGAAGATAACCAAGAAAAATAGAGTTTGGGATGTTTCACCAAAAGAGGCGCCCGAGTCGAAATTGGATTTTACAGGTGCTGTGGGTGAGAATGCAGAGAACAATGTTGAGGTTGTGGCAGCATATCATGGTGAAAGTATGATGGATAGGGAAGAGGATTACAGTATTGAAAGTGAGGCTGAAGAGGAAGAGGAAGCTGGAAAGGAAAGCAAGCCTGATTCAAAAAAGAAGAGTTGGATTTCATCTATGTTCCAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP-alpha_N SRP54 SRP54_N

Protein Analysis

214

Amino Acids

23.88

Weight (kDa)

9.26

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP-alpha_N PF04086 1 - 185 3.5e-17 Signal recognition particle, alpha subunit, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 433
AclWI GGATC 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 585
AcvI CACGTG 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 3 cut(s) 118, 554, 606
AhlI ACTAGT 1 cut(s) 269
AluBI AGCT 6 cut(s) 82, 172, 304, 347, 379, 581
AluI AGCT 6 cut(s) 82, 172, 304, 347, 379, 581
AlwI GGATC 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 2 cut(s) 93, 238
ApeKI GCWGC 4 cut(s) 79, 169, 172, 503
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 5 cut(s) 230, 236, 414, 482, 527
AvaI CYCGRG 1 cut(s) 437
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 368
BbrPI CACGTG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 47
BbvI GCAGC 4 cut(s) 91, 159, 181, 515
BccI CCATC 2 cut(s) 215, 520
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 2 cut(s) 270, 312
BfoI RGCGCY 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 121
BglII AGATCT 1 cut(s) 314
BisI GCNGC 4 cut(s) 80, 170, 173, 504
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 4 cut(s) 81, 171, 174, 505
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 367, 435
BpiI GAAGAC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 83
Bpu1102I GCTNAGC 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 96, 241, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 282
BseDI CCNNGG 3 cut(s) 96, 241, 369
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 97, 366
BseXI GCAGC 4 cut(s) 91, 159, 181, 515
BshFI GGCC 2 cut(s) 95, 240
BshNI GGYRCC 1 cut(s) 433
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 282
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 2 cut(s) 95, 240
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 2 cut(s) 31, 314
Bsp1720I GCTNAGC 1 cut(s) 375
BspANI GGCC 2 cut(s) 95, 240
BspCNI CTCAG 2 cut(s) 96, 367
BspLI GGNNCC 2 cut(s) 367, 435
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 433
BssECI CCNNGG 3 cut(s) 96, 241, 369
BssMI GATC 2 cut(s) 31, 314
BssNI GRCGYC 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 369
Bst4CI ACNGT 2 cut(s) 49, 548
Bst6I CTCTTC 5 cut(s) 187, 531, 561, 567, 608
BstACI GRCGYC 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 596
BstDEI CTNAG 3 cut(s) 83, 318, 375
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 421
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 2 cut(s) 34, 317
BstMBI GATC 2 cut(s) 31, 314
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstV1I GCAGC 4 cut(s) 91, 159, 181, 515
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 2 cut(s) 95, 240
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 421
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 596
CaiI CAGNNNCTG 1 cut(s) 464
CfoI GCGC 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 246
CviAII CATG 1 cut(s) 512
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 3 cut(s) 83, 318, 375
DinI GGCGCC 1 cut(s) 435
DpnI GATC 2 cut(s) 33, 316
DpnII GATC 2 cut(s) 31, 314
Eam1104I CTCTTC 5 cut(s) 187, 531, 561, 567, 608
EarI CTCTTC 5 cut(s) 187, 531, 561, 567, 608
Eco130I CCWWGG 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 585
Eco72I CACGTG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 437
EcoT14I CCWWGG 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 368
EgeI GGCGCC 1 cut(s) 435
EheI GGCGCC 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 1 cut(s) 515
FaiI YATR 6 cut(s) 30, 54, 508, 513, 524, 632
FatI CATG 1 cut(s) 511
Fnu4HI GCNGC 4 cut(s) 80, 170, 173, 504
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 4 cut(s) 80, 170, 173, 504
FspBI CTAG 2 cut(s) 270, 312
GlaI GCGC 1 cut(s) 435
GluI GCNGC 4 cut(s) 80, 170, 173, 504
HaeII RGCGCY 1 cut(s) 437
HaeIII GGCC 2 cut(s) 95, 240
HapII CCGG 1 cut(s) 76
HhaI GCGC 1 cut(s) 436
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 1 cut(s) 515
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 2 cut(s) 440, 602
HpaII CCGG 1 cut(s) 76
HphI GGTGA 5 cut(s) 230, 236, 414, 482, 527
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 3 cut(s) 85, 312, 637
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 4 cut(s) 82, 206, 229, 328
HpyCH4III ACNGT 2 cut(s) 49, 548
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 175, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 3 cut(s) 83, 318, 375
HpySE526I ACGT 1 cut(s) 103
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 1 cut(s) 515
HspAI GCGC 1 cut(s) 434
KasI GGCGCC 1 cut(s) 433
Kzo9I GATC 2 cut(s) 31, 314
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 8 cut(s) 8, 70, 89, 116, 156, 444, 567, 612
Lsp1109I GCAGC 4 cut(s) 91, 159, 181, 515
MaeI CTAG 2 cut(s) 270, 312
MaeII ACGT 1 cut(s) 103
MalI GATC 2 cut(s) 33, 316
MboI GATC 2 cut(s) 31, 314
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 2 cut(s) 14, 446
Mly113I GGCGCC 1 cut(s) 434
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 9 cut(s) 85, 91, 424, 487, 532, 553, 562, 568, 633
MseI TTAA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 169
NarI GGCGCC 1 cut(s) 434
NdeII GATC 2 cut(s) 31, 314
NlaIII CATG 1 cut(s) 515
NlaIV GGNNCC 2 cut(s) 367, 435
NmeAIII GCCGAG 1 cut(s) 121
PaqCI CACCTGC 1 cut(s) 121
PctI GAATGC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 602
PkrI GCNGC 4 cut(s) 81, 171, 174, 505
PleI GAGTC 1 cut(s) 448
PluTI GGCGCC 1 cut(s) 437
PmaCI CACGTG 1 cut(s) 104
PmlI CACGTG 1 cut(s) 104
PpsI GAGTC 1 cut(s) 448
Ppu21I YACGTR 1 cut(s) 104
PspCI CACGTG 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 367, 435
PspPI GGNCC 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 4 cut(s) 80, 170, 173, 504
Sau3AI GATC 2 cut(s) 31, 314
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 449
SduI GDGCHC 1 cut(s) 368
SfoI GGCGCC 1 cut(s) 435
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 2 cut(s) 14, 446
SspDI GGCGCC 1 cut(s) 433
SspMI CTAG 2 cut(s) 270, 312
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 49, 548
TaiI ACGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 125, 443
TasI AATT 2 cut(s) 14, 446
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 4 cut(s) 79, 169, 172, 503
TspDTI ATGAA 3 cut(s) 81, 225, 615
XbaI TCTAGA 1 cut(s) 311
XspI CTAG 2 cut(s) 270, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.