Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002654

Physical Location & Seq

Genomic Coordinates Reverse (-)

21720124 .. 21721126

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0211800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATCTCCATAGACTCATTATCTGCATCACTTTACTGTAAGAAAGAAACAAAGTTTCTTTCCCCTTTCAAATATATCAGTCTGCTCATCAATATGGCTCTAGCTATCCGTGGCTTCATCCTTGGGGCTCCAAAACCCAACACGCTCCAAATTCCCAGTTGCAAGTCCTATCAACAAAAAGCCATGACTATGCTGCAGACGCAGCACCACGGTCTTAAACATTCCCGGAAGATTAGTCAATCCCTTATAACATGTGTTGAAAAGCAATCCCTCGGCACAGGAAGTGGTCCAAAAATTAATCAGACAACATCATCGGAGCAAAAGGTTTCGGGTTTGAGCAGCTCAAACTCTGAGAGGACTGGCAAGAAAAGTAAAGGATCCGGAGAAGCCAACGCTACTACAAAAAAGACCGTGGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP-alpha_N SRP54 SRP54_N

Protein Analysis

140

Amino Acids

15.07

Weight (kDa)

10.02

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30600 AT4G30600
fragaria_vesca	FvH4_1g00830 FvH4_2g11040
malus_domestica	MD02G1006600.v1.1 MD15G1151700.v1.1
prunus_persica	Prupe.7G264100_v2.0.a1
pyrus_communis	pycom02g00550 pycom02g00560 pycom15g13570
rosa_chinensis	RchiOBHm_Chr2g0085561 RchiOBHm_Chr7g0224871 RchiOBHm_Chr7g0224891
rosa_laevigata	RLG00000015699
rosa_multiflora	Rmu_co8208878.1_g000001 Rmu_sc0000307.1_g000005 Rmu_sc0013957.1_g000001 Rmu_sc0014614.1_g000004 Rmu_sc0024179.1_g000002 Rmu_ssc0000347.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155270 Rroxscaffold_3G00234310
rosa_rugosa	Rorug01G0461300 Rorug01G0461300 Rorug01G0461300 Rorug02G0380200 Rorug05G0211800 Rorug07G0226700
rosa_samantha	Rh2AG010200 Rh2BG010800 Rh2CG011700 Rh2DG012700 Rh7AG376500 Rh7AG376700 Rh7BG362200 Rh7CG395200 Rh7DG372200 Rh7DG372300
rosa_wichuraiana	Rw2G000910 Rw7G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	380
AclWI	GGATC	2 cut(s)	372, 385
AcsI	RAATTY	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	70, 260
AluBI	AGCT	3 cut(s)	104, 342, 420
AluI	AGCT	3 cut(s)	104, 342, 420
AlwI	GGATC	2 cut(s)	372, 385
Aor13HI	TCCGGA	1 cut(s)	380
ApeKI	GCWGC	3 cut(s)	193, 202, 339
ApoI	RAATTY	1 cut(s)	150
AseI	ATTAAT	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	226
AsuNHI	GCTAGC	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	180, 214, 351
BcnI	CCSGG	1 cut(s)	226
BfaI	CTAG	3 cut(s)	101, 417, 421
BfmI	CTRYAG	1 cut(s)	194
BisI	GCNGC	3 cut(s)	194, 203, 340
BlsI	GCNGC	3 cut(s)	195, 204, 341
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	129, 379
BmrFI	CCNGG	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	35
BmtI	GCTAGC	1 cut(s)	420
BmuI	ACTGGG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	5 cut(s)	109, 121, 208, 271, 411
BsaWI	WCCGGW	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	156, 364
BseAI	TCCGGA	1 cut(s)	380
BseDI	CCNNGG	5 cut(s)	109, 121, 208, 271, 411
BseGI	GGATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	2 cut(s)	156, 364
BseXI	GCAGC	3 cut(s)	180, 214, 351
BsiSI	CCGG	2 cut(s)	226, 381
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp13I	TCCGGA	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	3, 377
BspCNI	CTCAG	1 cut(s)	343
BspEI	TCCGGA	1 cut(s)	380
BspLI	GGNNCC	2 cut(s)	129, 379
BspMAI	CTGCAG	1 cut(s)	198
BspOI	GCTAGC	1 cut(s)	420
BspPI	GGATC	2 cut(s)	372, 385
BsrI	ACTGG	2 cut(s)	156, 364
BssECI	CCNNGG	5 cut(s)	109, 121, 208, 271, 411
BssMI	GATC	2 cut(s)	3, 377
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	3 cut(s)	38, 212, 412
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	3 cut(s)	109, 208, 411
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	6, 380
BstMBI	GATC	2 cut(s)	3, 377
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 202
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	180, 214, 351
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BtgI	CCRYGG	3 cut(s)	109, 208, 411
BtsCI	GGATG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	287
CseI	GACGC	1 cut(s)	208
CviAII	CATG	2 cut(s)	184, 252
CviJI	RGCY	9 cut(s)	98, 104, 114, 128, 182, 342, 389, 416, 420
CviKI_1	RGCY	9 cut(s)	98, 104, 114, 128, 182, 342, 389, 416, 420
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	2 cut(s)	5, 379
DpnII	GATC	2 cut(s)	3, 377
Eco130I	CCWWGG	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	187, 255
FaiI	YATR	7 cut(s)	11, 75, 95, 185, 191, 248, 253
FatI	CATG	2 cut(s)	183, 251
Fnu4HI	GCNGC	3 cut(s)	194, 203, 340
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	3 cut(s)	194, 203, 340
FspBI	CTAG	3 cut(s)	101, 417, 421
GluI	GCNGC	3 cut(s)	194, 203, 340
HapII	CCGG	2 cut(s)	226, 381
HgaI	GACGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	187, 255
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	2 cut(s)	226, 381
Hpy188I	TCNGA	3 cut(s)	303, 316, 352
Hpy188III	TCNNGA	1 cut(s)	381
HpyCH4III	ACNGT	3 cut(s)	38, 212, 412
HpyCH4V	TGCA	3 cut(s)	26, 162, 196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 202
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	187, 255
Kpn2I	TCCGGA	1 cut(s)	380
Kzo9I	GATC	2 cut(s)	3, 377
LmnI	GCTCC	3 cut(s)	133, 150, 316
LpnPI	CCDG	5 cut(s)	169, 239, 264, 345, 394
Lsp1109I	GCAGC	3 cut(s)	180, 214, 351
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	3 cut(s)	101, 417, 421
MalI	GATC	2 cut(s)	5, 379
MboI	GATC	2 cut(s)	3, 377
MboII	GAAGA	1 cut(s)	241
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	2 cut(s)	150, 294
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	2 cut(s)	281, 348
MroI	TCCGGA	1 cut(s)	380
MseI	TTAA	2 cut(s)	216, 297
MslI	CAYNNNNRTG	2 cut(s)	92, 188
MspI	CCGG	2 cut(s)	226, 381
MspR9I	CCNGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	199, 202
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	3, 377
NheI	GCTAGC	1 cut(s)	416
NlaIII	CATG	2 cut(s)	187, 255
NlaIV	GGNNCC	2 cut(s)	129, 379
NmeAIII	GCCGAG	1 cut(s)	252
NspI	RCATGY	1 cut(s)	255
PciI	ACATGT	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	195, 204, 341
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PscI	ACATGT	1 cut(s)	251
PshBI	ATTAAT	1 cut(s)	297
PsiI	TTATAA	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	129, 379
PspPI	GGNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	377
RseI	CAYNNNNRTG	2 cut(s)	92, 188
SaqAI	TTAA	2 cut(s)	216, 297
SatI	GCNGC	3 cut(s)	194, 203, 340
Sau3AI	GATC	2 cut(s)	3, 377
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	4 cut(s)	106, 327, 344, 422
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	92, 188
Sse9I	AATT	2 cut(s)	150, 294
SspMI	CTAG	3 cut(s)	101, 417, 421
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	3 cut(s)	38, 212, 412
TasI	AATT	2 cut(s)	150, 294
Tru1I	TTAA	2 cut(s)	216, 297
Tru9I	TTAA	2 cut(s)	216, 297
TseI	GCWGC	3 cut(s)	193, 202, 339
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	1 cut(s)	255
XspI	CTAG	3 cut(s)	101, 417, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.