Rh7AG376500

Signal recognition particle receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002654
Physical Location & Seq
Forward (+)
48886937 .. 48887641
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG376500.1

Sequence Viewer

Length: 705 bp
ATGGTCAAGCACCAATTCTCACAGGTTTATGATCCGAAGAAGACGACTATGTATAATGATTTTGATGAAACTTTCCGGCAGCTCAGGAAGGAGGCCGAGGCACGTGCTGATGAGTTGAAGAAGTCGAAGCAGGTGGGGAAGCCTGTGAGTAATGGTAGGAAGCAAGGGCAGCTGCAAAAGAGTGGACTTGGAAGAGAGAAGAAGAATAATGAAGGTGGTGATGGTGATAGTGTGAAGGGCCGTAAATTGGATAATGGAATATCCAATGGTGGTCATGTTGTTGTCAGAGAATCTAATGTAGGTGGTACTGCTAATGGAAAAGAGAATACTAGTTCCAATCTTGGGGCTTTTGATGTAAATAAGCTTAAATCTAGATCTAAGGTTGGGAAGAAGACGGAAAAAACAGCTACCCTTGATAGCAAGGGCTCCAAGGCTGAGCTGAAAAAGAAGATAACCAAGAAAAATAGAGTTTGGGATGTTTCACCAAAAGAGGCGCCCGAGTCGAAATTGGATTTTACAGGTGCTGTGGGTGAGAATGCAGAGAACAATGTTGAGGTTGTGGCAGCATATCATGGTGAAAGTATGATGGATAGGGAAGAGGATTACAGTATTGAAAGTGAGGCTGAAGAGGAAGAGGAAGCTGGAAAGGAAAGCAAGCCTGATTCAAAAAAGAAGAGTTGGATTTCATCTATGTTCCAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP-alpha_N SRP54 SRP54_N

Protein Analysis

234

Amino Acids

25.92

Weight (kDa)

9.17

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP-alpha_N PF04086 1 - 205 3.5e-18 Signal recognition particle, alpha subunit, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 493
AclWI GGATC 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 645
AcvI CACGTG 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 2 cut(s) 247, 342
AgsI TTSAA 3 cut(s) 118, 614, 666
AhlI ACTAGT 1 cut(s) 329
AluBI AGCT 6 cut(s) 82, 172, 364, 407, 439, 641
AluI AGCT 6 cut(s) 82, 172, 364, 407, 439, 641
AlwI GGATC 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 2 cut(s) 93, 238
ApeKI GCWGC 4 cut(s) 79, 169, 172, 563
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 5 cut(s) 230, 236, 474, 542, 587
AvaI CYCGRG 1 cut(s) 497
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 428
BbrPI CACGTG 1 cut(s) 104
BbsI GAAGAC 2 cut(s) 47, 398
BbvI GCAGC 4 cut(s) 91, 159, 181, 575
BccI CCATC 2 cut(s) 215, 580
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 2 cut(s) 330, 372
BfoI RGCGCY 1 cut(s) 497
BfuAI ACCTGC 1 cut(s) 121
BglII AGATCT 1 cut(s) 374
BisI GCNGC 4 cut(s) 80, 170, 173, 564
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 4 cut(s) 81, 171, 174, 565
BmeT110I CYCGRG 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 427, 495
BpiI GAAGAC 2 cut(s) 47, 398
Bpu10I CCTNAGC 1 cut(s) 83
Bpu1102I GCTNAGC 1 cut(s) 435
BsaAI YACGTR 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 96, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 342
BseDI CCNNGG 2 cut(s) 96, 429
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 2 cut(s) 247, 342
BseMII CTCAG 2 cut(s) 97, 426
BseXI GCAGC 4 cut(s) 91, 159, 181, 575
BshFI GGCC 2 cut(s) 95, 240
BshNI GGYRCC 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 1 cut(s) 76
BslI CCNNNNNNNGG 2 cut(s) 247, 342
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 2 cut(s) 95, 240
BsoBI CYCGRG 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 2 cut(s) 31, 374
Bsp1720I GCTNAGC 1 cut(s) 435
BspANI GGCC 2 cut(s) 95, 240
BspCNI CTCAG 2 cut(s) 96, 427
BspLI GGNNCC 2 cut(s) 427, 495
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 493
BssECI CCNNGG 2 cut(s) 96, 429
BssMI GATC 2 cut(s) 31, 374
BssNI GRCGYC 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 608
Bst6I CTCTTC 5 cut(s) 187, 591, 621, 627, 668
BstACI GRCGYC 1 cut(s) 494
BstBAI YACGTR 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 656
BstDEI CTNAG 3 cut(s) 83, 378, 435
BstF5I GGATG 1 cut(s) 481
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 2 cut(s) 34, 377
BstMBI GATC 2 cut(s) 31, 374
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstV1I GCAGC 4 cut(s) 91, 159, 181, 575
BstV2I GAAGAC 2 cut(s) 47, 398
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 2 cut(s) 95, 240
BtsCI GGATG 1 cut(s) 481
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 656
CaiI CAGNNNCTG 1 cut(s) 524
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 306
CviAII CATG 2 cut(s) 275, 572
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 3 cut(s) 83, 378, 435
DinI GGCGCC 1 cut(s) 495
DpnI GATC 2 cut(s) 33, 376
DpnII GATC 2 cut(s) 31, 374
Eam1104I CTCTTC 5 cut(s) 187, 591, 621, 627, 668
EarI CTCTTC 5 cut(s) 187, 591, 621, 627, 668
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 645
Eco72I CACGTG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 428
EgeI GGCGCC 1 cut(s) 495
EheI GGCGCC 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 2 cut(s) 278, 575
FaiI YATR 8 cut(s) 30, 50, 54, 276, 568, 573, 584, 692
FatI CATG 2 cut(s) 274, 571
Fnu4HI GCNGC 4 cut(s) 80, 170, 173, 564
FokI GGATG 1 cut(s) 488
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 4 cut(s) 80, 170, 173, 564
FspBI CTAG 2 cut(s) 330, 372
GlaI GCGC 1 cut(s) 495
GluI GCNGC 4 cut(s) 80, 170, 173, 564
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 2 cut(s) 95, 240
HapII CCGG 1 cut(s) 76
HhaI GCGC 1 cut(s) 496
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 2 cut(s) 278, 575
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 3 cut(s) 290, 500, 662
HpaII CCGG 1 cut(s) 76
HphI GGTGA 5 cut(s) 230, 236, 474, 542, 587
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 36, 287
Hpy188III TCNNGA 3 cut(s) 85, 372, 697
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 3 cut(s) 82, 206, 229
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 175, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 3 cut(s) 83, 378, 435
HpySE526I ACGT 1 cut(s) 103
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 2 cut(s) 278, 575
HspAI GCGC 1 cut(s) 494
KasI GGCGCC 1 cut(s) 493
Kzo9I GATC 2 cut(s) 31, 374
LmnI GCTCC 1 cut(s) 431
LpnPI CCDG 8 cut(s) 8, 70, 89, 116, 156, 504, 627, 672
Lsp1109I GCAGC 4 cut(s) 91, 159, 181, 575
MaeI CTAG 2 cut(s) 330, 372
MaeII ACGT 1 cut(s) 103
MalI GATC 2 cut(s) 33, 376
MboI GATC 2 cut(s) 31, 374
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 3 cut(s) 14, 245, 506
Mly113I GGCGCC 1 cut(s) 494
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 1 cut(s) 659
MnlI CCTC 9 cut(s) 85, 91, 484, 547, 592, 613, 622, 628, 693
MseI TTAA 1 cut(s) 366
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 541
MwoI GCNNNNNNNGC 1 cut(s) 169
NarI GGCGCC 1 cut(s) 494
NdeII GATC 2 cut(s) 31, 374
NlaIII CATG 2 cut(s) 278, 575
NlaIV GGNNCC 2 cut(s) 427, 495
NmeAIII GCCGAG 1 cut(s) 121
PaqCI CACCTGC 1 cut(s) 121
PctI GAATGC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 290, 662
PkrI GCNGC 4 cut(s) 81, 171, 174, 565
PleI GAGTC 1 cut(s) 508
PluTI GGCGCC 1 cut(s) 497
PmaCI CACGTG 1 cut(s) 104
PmlI CACGTG 1 cut(s) 104
PpsI GAGTC 1 cut(s) 508
Ppu21I YACGTR 1 cut(s) 104
PspCI CACGTG 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 427, 495
PspPI GGNCC 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 4 cut(s) 80, 170, 173, 564
Sau3AI GATC 2 cut(s) 31, 374
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 509
SduI GDGCHC 1 cut(s) 428
SfoI GGCGCC 1 cut(s) 495
SpeI ACTAGT 1 cut(s) 329
Sse9I AATT 3 cut(s) 14, 245, 506
SspDI GGCGCC 1 cut(s) 493
SspMI CTAG 2 cut(s) 330, 372
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 608
TaiI ACGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 125, 503
TasI AATT 3 cut(s) 14, 245, 506
TfiI GAWTC 2 cut(s) 290, 662
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseI GCWGC 4 cut(s) 79, 169, 172, 563
TspDTI ATGAA 3 cut(s) 81, 225, 675
TspGWI ACGGA 1 cut(s) 410
XbaI TCTAGA 1 cut(s) 371
XspI CTAG 2 cut(s) 330, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.