Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014614.1

Orthogroup ID

OG0002654

Physical Location & Seq

Genomic Coordinates Reverse (-)

9552 .. 10146

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014614.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 595 bp

tgattttgatgaaactttccggcagctcaggaaggaggccgaggcacctgctgatgagttgaagaagtcgaagcaggtggggaagcctgtgagtaatggtaggaagcaggggcagctgcaaaagagtggacttggaagagagaagaagaataatgaaggtggtgatggtgatagtgtgaagggccgtaaattggagaatggaatatccaatggtggtcatgttgttgtcagagaatctaatgtaggtggtactgctaatggaaaagagaatactagttccaatcttggggcttttgatgtaaataagcttaaatctagatctaaggttgggaagaagacggaaaaaacagctacccttgatagcaagggctccaaggctgagctgaaaaggaagataaccaagaaaaatagagtttgggatgtttcaccaaaagaggcgcccgggtcgaaattggattttacaggtgctgcgggtgagaatgcagagaacaatgttgaggctgtggcagcatatcatggtgaaagtatgatggatagggaagaggattacagtattgaaagtgaggctgaagaggaagttggaaagcaagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP-alpha_N SRP54 SRP54_N

Protein Analysis

197

Amino Acids

21.27

Weight (kDa)

8.88

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30600 AT4G30600
fragaria_vesca	FvH4_1g00830 FvH4_2g11040
malus_domestica	MD02G1006600.v1.1 MD15G1151700.v1.1
prunus_persica	Prupe.7G264100_v2.0.a1
pyrus_communis	pycom02g00550 pycom02g00560 pycom15g13570
rosa_chinensis	RchiOBHm_Chr2g0085561 RchiOBHm_Chr7g0224871 RchiOBHm_Chr7g0224891
rosa_laevigata	RLG00000015699
rosa_multiflora	Rmu_co8208878.1_g000001 Rmu_sc0000307.1_g000005 Rmu_sc0013957.1_g000001 Rmu_sc0014614.1_g000004 Rmu_sc0024179.1_g000002 Rmu_ssc0000347.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155270 Rroxscaffold_3G00234310
rosa_rugosa	Rorug01G0461300 Rorug01G0461300 Rorug01G0461300 Rorug02G0380200 Rorug05G0211800 Rorug07G0226700
rosa_samantha	Rh2AG010200 Rh2BG010800 Rh2CG011700 Rh2DG012700 Rh7AG376500 Rh7AG376700 Rh7BG362200 Rh7CG395200 Rh7DG372200 Rh7DG372300
rosa_wichuraiana	Rw2G000910 Rw7G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	56, 65
Acc36I	ACCTGC	2 cut(s)	56, 65
AccB1I	GGYRCC	2 cut(s)	44, 437
AciI	CCGC	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	589
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	191, 286
AgsI	TTSAA	2 cut(s)	62, 558
AhlI	ACTAGT	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	562, 594
AluBI	AGCT	5 cut(s)	26, 116, 308, 351, 383
AluI	AGCT	5 cut(s)	26, 116, 308, 351, 383
AlwNI	CAGNNNCTG	1 cut(s)	468
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	2 cut(s)	37, 182
ApeKI	GCWGC	5 cut(s)	23, 113, 116, 468, 507
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	2 cut(s)	442, 443
AsuHPI	GGTGA	5 cut(s)	174, 180, 418, 486, 531
AvaI	CYCGRG	1 cut(s)	441
BanI	GGYRCC	2 cut(s)	44, 437
BanII	GRGCYC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	342
BbvI	GCAGC	5 cut(s)	35, 103, 125, 455, 519
BccI	CCATC	2 cut(s)	159, 524
BceAI	ACGGC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BcnI	CCSGG	2 cut(s)	442, 443
BcuI	ACTAGT	1 cut(s)	273
BfaI	CTAG	2 cut(s)	274, 316
BfoI	RGCGCY	1 cut(s)	441
BfuAI	ACCTGC	2 cut(s)	56, 65
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	5 cut(s)	24, 114, 117, 469, 508
BlpI	GCTNAGC	1 cut(s)	379
BlsI	GCNGC	5 cut(s)	25, 115, 118, 470, 509
Bme1390I	CCNGG	2 cut(s)	442, 443
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	3 cut(s)	46, 371, 439
BmrFI	CCNGG	2 cut(s)	442, 443
BpiI	GAAGAC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	379
BpuMI	CCSGG	2 cut(s)	442, 443
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	40, 373, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 286
BseDI	CCNNGG	3 cut(s)	40, 373, 441
BseGI	GGATG	1 cut(s)	425
BseLI	CCNNNNNNNGG	2 cut(s)	191, 286
BseMII	CTCAG	2 cut(s)	41, 370
BseXI	GCAGC	5 cut(s)	35, 103, 125, 455, 519
BshFI	GGCC	2 cut(s)	39, 184
BshNI	GGYRCC	2 cut(s)	44, 437
BsiHKCI	CYCGRG	1 cut(s)	441
BsiSI	CCGG	2 cut(s)	20, 442
BslI	CCNNNNNNNGG	2 cut(s)	191, 286
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	39, 184
BsoBI	CYCGRG	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	318
Bsp1720I	GCTNAGC	1 cut(s)	379
BspACI	CCGC	1 cut(s)	471
BspANI	GGCC	2 cut(s)	39, 184
BspCNI	CTCAG	2 cut(s)	40, 371
BspLI	GGNNCC	3 cut(s)	46, 371, 439
BspMI	ACCTGC	2 cut(s)	56, 65
BspT107I	GGYRCC	2 cut(s)	44, 437
BssECI	CCNNGG	3 cut(s)	40, 373, 441
BssMI	GATC	1 cut(s)	318
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	552
Bst6I	CTCTTC	3 cut(s)	131, 535, 565
BstACI	GRCGYC	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	3 cut(s)	27, 322, 379
BstF5I	GGATG	1 cut(s)	425
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 507
BstSCI	CCNGG	2 cut(s)	440, 441
BstV1I	GCAGC	5 cut(s)	35, 103, 125, 455, 519
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	39, 184
BtsCI	GGATG	1 cut(s)	425
BveI	ACCTGC	2 cut(s)	56, 65
Cac8I	GCNNGC	1 cut(s)	589
CaiI	CAGNNNCTG	1 cut(s)	468
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	182
Cfr9I	CCCGGG	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	219, 516
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	3 cut(s)	27, 322, 379
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
Eam1104I	CTCTTC	3 cut(s)	131, 535, 565
EarI	CTCTTC	3 cut(s)	131, 535, 565
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	372
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	2 cut(s)	222, 519
FaiI	YATR	4 cut(s)	220, 512, 517, 528
FatI	CATG	2 cut(s)	218, 515
FauI	CCCGC	1 cut(s)	464
Fnu4HI	GCNGC	5 cut(s)	24, 114, 117, 469, 508
FokI	GGATG	1 cut(s)	432
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	5 cut(s)	24, 114, 117, 469, 508
FspBI	CTAG	2 cut(s)	274, 316
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	5 cut(s)	24, 114, 117, 469, 508
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	39, 184
HapII	CCGG	2 cut(s)	20, 442
HhaI	GCGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	2 cut(s)	222, 519
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	1 cut(s)	234
HpaII	CCGG	2 cut(s)	20, 442
HphI	GGTGA	5 cut(s)	174, 180, 418, 486, 531
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	2 cut(s)	29, 316
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	3 cut(s)	26, 150, 173
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4V	TGCA	2 cut(s)	119, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 507
HpyF3I	CTNAG	3 cut(s)	27, 322, 379
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	2 cut(s)	222, 519
HspAI	GCGC	1 cut(s)	438
KasI	GGCGCC	1 cut(s)	437
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	8 cut(s)	14, 33, 60, 61, 93, 100, 448, 455
Lsp1109I	GCAGC	5 cut(s)	35, 103, 125, 455, 519
MaeI	CTAG	2 cut(s)	274, 316
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	9 cut(s)	74, 148, 155, 158, 344, 347, 404, 552, 582
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	2 cut(s)	189, 450
Mly113I	GGCGCC	1 cut(s)	438
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	7 cut(s)	29, 35, 428, 491, 536, 557, 566
MseI	TTAA	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	20, 442
MspR9I	CCNGG	2 cut(s)	442, 443
Mva1269I	GAATGC	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	113, 507
NarI	GGCGCC	1 cut(s)	438
NciI	CCSGG	2 cut(s)	442, 443
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	2 cut(s)	222, 519
NlaIV	GGNNCC	3 cut(s)	46, 371, 439
NmeAIII	GCCGAG	1 cut(s)	65
PaqCI	CACCTGC	2 cut(s)	56, 65
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	234
PkrI	GCNGC	5 cut(s)	25, 115, 118, 470, 509
PluTI	GGCGCC	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	46, 371, 439
PspPI	GGNCC	1 cut(s)	182
PstNI	CAGNNNCTG	1 cut(s)	468
PsuI	RGATCY	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	310
SatI	GCNGC	5 cut(s)	24, 114, 117, 469, 508
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	442, 443
SduI	GDGCHC	1 cut(s)	372
SfoI	GGCGCC	1 cut(s)	439
SmaI	CCCGGG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	273
Sse9I	AATT	2 cut(s)	189, 450
SsiI	CCGC	1 cut(s)	471
SspDI	GGCGCC	1 cut(s)	437
SspMI	CTAG	2 cut(s)	274, 316
StyD4I	CCNGG	2 cut(s)	440, 441
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	552
TaqI	TCGA	2 cut(s)	69, 447
TasI	AATT	2 cut(s)	189, 450
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TseI	GCWGC	5 cut(s)	23, 113, 116, 468, 507
TspDTI	ATGAA	2 cut(s)	25, 169
TspGWI	ACGGA	1 cut(s)	354
TspMI	CCCGGG	1 cut(s)	441
XbaI	TCTAGA	1 cut(s)	315
XmaI	CCCGGG	1 cut(s)	441
XspI	CTAG	2 cut(s)	274, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.