Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002654

Physical Location & Seq

Genomic Coordinates Reverse (-)

45009060 .. 45034070

Gene Structure 25011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGTTAGAACAGTTACTGATATTTACAAGAGGAGGATTAATCCTGTGGACTTGTAAAGAGCTTGGAAATGCTCTTAAAGGATCCCCCATCGACACATTGATCCGTTCCTGTCTTCTCGAGGAACGATCCGGTGCGGCATTCTATGATTACACTGCTCCAGGGGCTGCTTACACTCTCAAATGGACTTTCCATAATGAGCTTGGCCTCGTGTTCGTGGCTCTGCTTTCGATGGTCAAGCACCAATTCTCACAGGTTTATGATCCGAAGAAGACGACTGTGTATAATGATTTTGATGAAACTTTCCGGCAGCTCAGGAAGGAGGCCGAGGCACCTGCTGATGAGTTGAAGAAGTCGAAGCAGGTGGGGAAGCCTGTGAGTAATGGTAGGAAGCAGGGGCAGCTGCAAAAGAGTGGACTTGGAAGAGAGAAGAAGAATAATGAAGGTGGTGATGGTGATAGTGTGAAGGGCCGTAAATTGGAGAATGGAATATCCAATGGTGGTCATGTTGTTGTCAGAGAATCTAATGTAGGTGGTACTGCTAATGGAAAAGAGAATACTAGTTCCAATCTTGGGGCTTTTGATGTAAATAAGCTTAAATCTAGATCTAAGGTTGGGAAGAAGACGGAAAAAACAGCTACCCTTGATAGCAAGGGCTCCAAGGCTGAGCTGAAAAGGAAGATAACCAAGAAAGGCGCCCGGAATGCAGAGAACAATGTTGAGGCTGTGGCAGCATATCATGGTGAAAGTATGATGGATAGGGAAGAGGATTACAGTATTGAAATGGCAGCTAGTCTCGAGGGTAAAAAGTTTGGTTCATTTACAAGAATATCTTCTACTGTTCAAGCAGCAATGGAAGAAGCTCTTGTTCGTATATTAACCCCTAGGCGCTCTACTGATATACTGAGGGACGTGCATGCTGCCAAGGAGCTTATGTTGTTGTTTTGGTTGGTTGCTTATTGGCTTCAGCAGCATCAGGTCAGTGTTATGATGGCTGCCTGTGATACATTCCGATCAGGGGCTGTTGAGCAACTGCGTACTCATGCGATCCCTATTTTTGAAAAGGGATATGAGAAAGATCCTGCTGTTGTTGCTAAGGAAGCAATCCAGGAGGCCACACTGAGTGGTTCTGATGTGGTTCTTGTTGATACAGCTGGTCGAATGCAGGATAATGAACCATTAATGAGGGCACTGTCAAAGCTTATGTACATTAACAATCCAGATCTTGTCTTGTTTGTTGGAGAGGCATTGGTTGGGAATGATCCTGTTGATCAGCTTTCAAAGTTTAATCAGGTTGGAGCTGCACTGTCCGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP-alpha_N SRP54 SRP54_N

Protein Analysis

438

Amino Acids

48.14

Weight (kDa)

8.8

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP-alpha_N	PF04086	28 - 235	8.7e-28	Signal recognition particle, alpha subunit, N-terminal
SRP54	PF00448	317 - 431	3.3e-27	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30600 AT4G30600
fragaria_vesca	FvH4_1g00830 FvH4_2g11040
malus_domestica	MD02G1006600.v1.1 MD15G1151700.v1.1
prunus_persica	Prupe.7G264100_v2.0.a1
pyrus_communis	pycom02g00550 pycom02g00560 pycom15g13570
rosa_chinensis	RchiOBHm_Chr2g0085561 RchiOBHm_Chr7g0224871 RchiOBHm_Chr7g0224891
rosa_laevigata	RLG00000015699
rosa_multiflora	Rmu_co8208878.1_g000001 Rmu_sc0000307.1_g000005 Rmu_sc0013957.1_g000001 Rmu_sc0014614.1_g000004 Rmu_sc0024179.1_g000002 Rmu_ssc0000347.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155270 Rroxscaffold_3G00234310
rosa_rugosa	Rorug01G0461300 Rorug01G0461300 Rorug01G0461300 Rorug02G0380200 Rorug05G0211800 Rorug07G0226700
rosa_samantha	Rh2AG010200 Rh2BG010800 Rh2CG011700 Rh2DG012700 Rh7AG376500 Rh7AG376700 Rh7BG362200 Rh7CG395200 Rh7DG372200 Rh7DG372300
rosa_wichuraiana	Rw2G000910 Rw7G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	340, 349
Acc36I	ACCTGC	2 cut(s)	340, 349
AccB1I	GGYRCC	2 cut(s)	328, 692
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	8 cut(s)	75, 88, 94, 120, 254, 1039, 1070, 1253
AcuI	CTGAAG	1 cut(s)	947
AcyI	GRCGYC	1 cut(s)	693
AdeI	CACNNNGTG	1 cut(s)	1121
AfaI	GTAC	3 cut(s)	535, 1036, 1205
AfiI	CCNNNNNNNGG	3 cut(s)	475, 570, 1015
AgsI	TTSAA	5 cut(s)	346, 779, 842, 1058, 1278
AhlI	ACTAGT	1 cut(s)	557
AjiI	CACGTC	1 cut(s)	910
AjnI	CCWGG	2 cut(s)	157, 1104
Alw26I	GTCTC	1 cut(s)	797
AlwI	GGATC	8 cut(s)	75, 88, 94, 120, 254, 1039, 1070, 1253
AlwNI	CAGNNNCTG	3 cut(s)	16, 164, 1019
Ama87I	CYCGRG	2 cut(s)	116, 794
AoxI	GGCC	4 cut(s)	202, 321, 466, 1110
AseI	ATTAAT	2 cut(s)	38, 1178
Asp700I	GAANNNNTTC	1 cut(s)	829
AspA2I	CCTAGG	1 cut(s)	881
AspLEI	GCGC	2 cut(s)	695, 888
AspS9I	GGNCC	1 cut(s)	466
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	3 cut(s)	458, 464, 752
AvaI	CYCGRG	2 cut(s)	116, 794
AvrII	CCTAGG	1 cut(s)	881
BaeGI	GKGCMC	1 cut(s)	1189
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	2 cut(s)	328, 692
BanII	GRGCYC	1 cut(s)	656
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	3 cut(s)	104, 275, 626
BccI	CCATC	5 cut(s)	95, 223, 443, 745, 982
BceAI	ACGGC	1 cut(s)	453
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	2 cut(s)	159, 1106
BclI	TGATCA	1 cut(s)	1267
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	797
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	4 cut(s)	558, 600, 789, 882
BfoI	RGCGCY	2 cut(s)	696, 889
BfuAI	ACCTGC	2 cut(s)	340, 349
BglII	AGATCT	2 cut(s)	602, 1219
BlnI	CCTAGG	1 cut(s)	881
BlpI	GCTNAGC	1 cut(s)	663
Bme1390I	CCNGG	3 cut(s)	159, 697, 1106
BmeT110I	CYCGRG	2 cut(s)	116, 794
BmgBI	CACGTC	1 cut(s)	910
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	4 cut(s)	82, 330, 655, 694
BmrFI	CCNGG	3 cut(s)	159, 697, 1106
BmsI	GCATC	1 cut(s)	979
BpiI	GAAGAC	3 cut(s)	104, 275, 626
BpmI	CTGGAG	1 cut(s)	141
Bpu10I	CCTNAGC	2 cut(s)	311, 1092
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuMI	CCSGG	1 cut(s)	697
BsaHI	GRCGYC	1 cut(s)	693
BsaJI	CCNNGG	6 cut(s)	158, 324, 657, 881, 921, 1308
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	917, 947
Bsc4I	CCNNNNNNNGG	3 cut(s)	475, 570, 1015
Bse3DI	GCAATG	1 cut(s)	855
BseBI	CCWGG	2 cut(s)	159, 1106
BseDI	CCNNGG	6 cut(s)	158, 324, 657, 881, 921, 1308
BseLI	CCNNNNNNNGG	3 cut(s)	475, 570, 1015
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	4 cut(s)	325, 654, 893, 1109
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	1189
BsgI	GTGCAG	1 cut(s)	1284
BshFI	GGCC	4 cut(s)	204, 323, 468, 1112
BshNI	GGYRCC	2 cut(s)	328, 692
BsiHKCI	CYCGRG	2 cut(s)	116, 794
BsiSI	CCGG	3 cut(s)	129, 304, 697
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	3 cut(s)	475, 570, 1015
BsmAI	GTCTC	1 cut(s)	797
BsmFI	GGGAC	1 cut(s)	920
BsmI	GAATGC	3 cut(s)	137, 706, 1164
BsnI	GGCC	4 cut(s)	204, 323, 468, 1112
BsoBI	CYCGRG	2 cut(s)	116, 794
Bsp1286I	GDGCHC	2 cut(s)	656, 1189
Bsp1407I	TGTACA	1 cut(s)	1203
Bsp1720I	GCTNAGC	1 cut(s)	663
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	4 cut(s)	204, 323, 468, 1112
BspCNI	CTCAG	4 cut(s)	324, 655, 894, 1110
BspLI	GGNNCC	4 cut(s)	82, 330, 655, 694
BspMI	ACCTGC	2 cut(s)	340, 349
BspPI	GGATC	8 cut(s)	75, 88, 94, 120, 254, 1039, 1070, 1253
BspT107I	GGYRCC	2 cut(s)	328, 692
BsrDI	GCAATG	1 cut(s)	855
BsrGI	TGTACA	1 cut(s)	1203
BssECI	CCNNGG	6 cut(s)	158, 324, 657, 881, 921, 1308
BssNI	GRCGYC	1 cut(s)	693
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	3 cut(s)	657, 881, 921
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	159, 1106
Bst4CI	ACNGT	6 cut(s)	12, 277, 773, 838, 1191, 1305
Bst6I	CTCTTC	2 cut(s)	415, 756
BstACI	GRCGYC	1 cut(s)	693
BstAUI	TGTACA	1 cut(s)	1203
BstC8I	GCNNGC	1 cut(s)	915
BstDEI	CTNAG	6 cut(s)	311, 606, 663, 902, 1092, 1118
BstDSI	CCRYGG	1 cut(s)	1308
BstH2I	RGCGCY	2 cut(s)	696, 889
BstHHI	GCGC	2 cut(s)	695, 888
BstMAI	GTCTC	1 cut(s)	797
BstMWI	GCNNNNNNNGC	7 cut(s)	161, 397, 701, 728, 967, 1088, 1097
BstNI	CCWGG	2 cut(s)	159, 1106
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	3 cut(s)	157, 695, 1104
BstSLI	GKGCMC	1 cut(s)	1189
BstV2I	GAAGAC	3 cut(s)	104, 275, 626
BstX2I	RGATCY	4 cut(s)	80, 602, 1075, 1219
BstYI	RGATCY	4 cut(s)	80, 602, 1075, 1219
BsuRI	GGCC	4 cut(s)	204, 323, 468, 1112
BtgI	CCRYGG	1 cut(s)	1308
BtrI	CACGTC	1 cut(s)	910
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	5 cut(s)	150, 985, 1115, 1187, 1301
BveI	ACCTGC	2 cut(s)	340, 349
Cac8I	GCNNGC	1 cut(s)	915
CaiI	CAGNNNCTG	3 cut(s)	16, 164, 1019
CfoI	GCGC	2 cut(s)	695, 888
Cfr13I	GGNCC	1 cut(s)	466
Csp6I	GTAC	3 cut(s)	534, 1035, 1204
CviAII	CATG	4 cut(s)	503, 737, 914, 1040
CviQI	GTAC	3 cut(s)	534, 1035, 1204
DdeI	CTNAG	6 cut(s)	311, 606, 663, 902, 1092, 1118
DinI	GGCGCC	1 cut(s)	694
DraIII	CACNNNGTG	1 cut(s)	1121
Eam1104I	CTCTTC	2 cut(s)	415, 756
EarI	CTCTTC	2 cut(s)	415, 756
Eco130I	CCWWGG	3 cut(s)	657, 881, 921
Eco24I	GRGCYC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	947
Eco88I	CYCGRG	2 cut(s)	116, 794
EcoRII	CCWGG	2 cut(s)	157, 1104
EcoT14I	CCWWGG	3 cut(s)	657, 881, 921
EcoT38I	GRGCYC	1 cut(s)	656
EgeI	GGCGCC	1 cut(s)	694
EheI	GGCGCC	1 cut(s)	694
ErhI	CCWWGG	3 cut(s)	657, 881, 921
FaeI	CATG	4 cut(s)	506, 740, 917, 1043
FalI	AAGNNNNNCTT	4 cut(s)	814, 846, 846, 878
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	4 cut(s)	502, 736, 913, 1039
FbaI	TGATCA	1 cut(s)	1267
FriOI	GRGCYC	1 cut(s)	656
FspBI	CTAG	4 cut(s)	558, 600, 789, 882
GlaI	GCGC	2 cut(s)	694, 887
GsuI	CTGGAG	1 cut(s)	141
HaeII	RGCGCY	2 cut(s)	696, 889
HaeIII	GGCC	4 cut(s)	204, 323, 468, 1112
HapII	CCGG	3 cut(s)	129, 304, 697
HhaI	GCGC	2 cut(s)	695, 888
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	4 cut(s)	506, 740, 917, 1043
Hin6I	GCGC	2 cut(s)	693, 886
HinP1I	GCGC	2 cut(s)	693, 886
HindIII	AAGCTT	2 cut(s)	590, 1196
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	3 cut(s)	129, 304, 697
HphI	GGTGA	3 cut(s)	458, 464, 752
Hpy166II	GTNNAC	2 cut(s)	48, 413
Hpy188I	TCNGA	4 cut(s)	264, 515, 1010, 1129
Hpy188III	TCNNGA	5 cut(s)	116, 313, 600, 794, 1217
Hpy8I	GTNNAC	2 cut(s)	48, 413
HpyAV	CCTTC	3 cut(s)	310, 434, 457
HpyCH4III	ACNGT	6 cut(s)	12, 277, 773, 838, 1191, 1305
HpyCH4IV	ACGT	1 cut(s)	909
HpyCH4V	TGCA	5 cut(s)	403, 704, 913, 1162, 1301
HpyF10VI	GCNNNNNNNGC	7 cut(s)	161, 397, 701, 728, 967, 1088, 1097
HpyF3I	CTNAG	6 cut(s)	311, 606, 663, 902, 1092, 1118
HpySE526I	ACGT	1 cut(s)	909
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	4 cut(s)	506, 740, 917, 1043
HspAI	GCGC	2 cut(s)	693, 886
KasI	GGCGCC	1 cut(s)	692
Ksp22I	TGATCA	1 cut(s)	1267
LmnI	GCTCC	4 cut(s)	160, 659, 925, 1295
LweI	GCATC	1 cut(s)	979
MaeI	CTAG	4 cut(s)	558, 600, 789, 882
MaeII	ACGT	1 cut(s)	909
MaeIII	GTNAC	1 cut(s)	12
MflI	RGATCY	4 cut(s)	80, 602, 1075, 1219
MhlI	GDGCHC	2 cut(s)	656, 1189
MluCI	AATT	2 cut(s)	242, 473
Mly113I	GGCGCC	1 cut(s)	693
MmeI	TCCRAC	2 cut(s)	1216, 1273
MroXI	GAANNNNTTC	1 cut(s)	829
MseI	TTAA	8 cut(s)	38, 75, 594, 875, 1178, 1209, 1284, 1315
MspA1I	CMGCKG	2 cut(s)	400, 1151
MspI	CCGG	3 cut(s)	129, 304, 697
MspR9I	CCNGG	3 cut(s)	159, 697, 1106
Mva1269I	GAATGC	3 cut(s)	137, 706, 1164
MvaI	CCWGG	2 cut(s)	159, 1106
MwoI	GCNNNNNNNGC	7 cut(s)	161, 397, 701, 728, 967, 1088, 1097
NarI	GGCGCC	1 cut(s)	693
NciI	CCSGG	1 cut(s)	697
NlaIII	CATG	4 cut(s)	506, 740, 917, 1043
NlaIV	GGNNCC	4 cut(s)	82, 330, 655, 694
NmeAIII	GCCGAG	1 cut(s)	349
NspI	RCATGY	1 cut(s)	917
PaeI	GCATGC	1 cut(s)	917
PaeR7I	CTCGAG	2 cut(s)	116, 794
PaqCI	CACCTGC	2 cut(s)	340, 349
PctI	GAATGC	3 cut(s)	137, 706, 1164
PdmI	GAANNNNTTC	1 cut(s)	829
PfeI	GAWTC	1 cut(s)	518
PfoI	TCCNGGA	1 cut(s)	1104
PluTI	GGCGCC	1 cut(s)	696
PshBI	ATTAAT	2 cut(s)	38, 1178
Psp6I	CCWGG	2 cut(s)	157, 1104
PspGI	CCWGG	2 cut(s)	157, 1104
PspN4I	GGNNCC	4 cut(s)	82, 330, 655, 694
PspPI	GGNCC	1 cut(s)	466
PstNI	CAGNNNCTG	3 cut(s)	16, 164, 1019
PsuI	RGATCY	4 cut(s)	80, 602, 1075, 1219
PvuII	CAGCTG	2 cut(s)	400, 1151
RsaI	GTAC	3 cut(s)	535, 1036, 1205
RsaNI	GTAC	3 cut(s)	534, 1035, 1204
SaqAI	TTAA	8 cut(s)	38, 75, 594, 875, 1178, 1209, 1284, 1315
Sau96I	GGNCC	1 cut(s)	466
ScrFI	CCNGG	3 cut(s)	159, 697, 1106
SduI	GDGCHC	2 cut(s)	656, 1189
SfaNI	GCATC	1 cut(s)	979
SfoI	GGCGCC	1 cut(s)	694
Sfr274I	CTCGAG	2 cut(s)	116, 794
SlaI	CTCGAG	2 cut(s)	116, 794
SmlI	CTYRAG	2 cut(s)	116, 794
SmoI	CTYRAG	2 cut(s)	116, 794
SpeI	ACTAGT	1 cut(s)	557
SphI	GCATGC	1 cut(s)	917
Sse9I	AATT	2 cut(s)	242, 473
SsiI	CCGC	1 cut(s)	134
SspDI	GGCGCC	1 cut(s)	692
SspMI	CTAG	4 cut(s)	558, 600, 789, 882
StyD4I	CCNGG	3 cut(s)	157, 695, 1104
StyI	CCWWGG	3 cut(s)	657, 881, 921
TaaI	ACNGT	6 cut(s)	12, 277, 773, 838, 1191, 1305
TaiI	ACGT	1 cut(s)	912
TaqI	TCGA	6 cut(s)	90, 117, 227, 353, 795, 1156
TasI	AATT	2 cut(s)	242, 473
TatI	WGTACW	1 cut(s)	1203
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	8 cut(s)	38, 75, 594, 875, 1178, 1209, 1284, 1315
Tru9I	TTAA	8 cut(s)	38, 75, 594, 875, 1178, 1209, 1284, 1315
TscAI	CASTG	5 cut(s)	157, 985, 1122, 1194, 1308
TspDTI	ATGAA	4 cut(s)	309, 453, 804, 1185
TspGWI	ACGGA	3 cut(s)	92, 638, 1297
TspRI	CASTG	5 cut(s)	157, 985, 1122, 1194, 1308
VspI	ATTAAT	2 cut(s)	38, 1178
XbaI	TCTAGA	1 cut(s)	599
XceI	RCATGY	1 cut(s)	917
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XhoI	CTCGAG	2 cut(s)	116, 794
XmaJI	CCTAGG	1 cut(s)	881
XmnI	GAANNNNTTC	1 cut(s)	829
XspI	CTAG	4 cut(s)	558, 600, 789, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.