Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8208878.1

Orthogroup ID

OG0002654

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 624

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8208878.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggaagaagctcttgttcgtattttaactcctaggcgctctattgatatactgagggatgtgcatgctgccaaggagcagggcaagccttatgttgttgtttttgttggtgtcaatggagtcgggaaatctactaatttggccaaggttgcctattggctccagcagcatcaggtcagtgttatgatggctgcatgtgatacattccgatcaggggctgttgagcagttgcgtactcatgcacgtagactccagatccctatttttgagaagggatatgagaaagatcctgctgttgttgcaaaggaagcaatccaggaggccaaactcaatggttctgatgtggttcttgttgatacagctggtcgaatgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP-alpha_N SRP54 SRP54_N

Protein Analysis

125

Amino Acids

13.86

Weight (kDa)

9.16

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30600 AT4G30600
fragaria_vesca	FvH4_1g00830 FvH4_2g11040
malus_domestica	MD02G1006600.v1.1 MD15G1151700.v1.1
prunus_persica	Prupe.7G264100_v2.0.a1
pyrus_communis	pycom02g00550 pycom02g00560 pycom15g13570
rosa_chinensis	RchiOBHm_Chr2g0085561 RchiOBHm_Chr7g0224871 RchiOBHm_Chr7g0224891
rosa_laevigata	RLG00000015699
rosa_multiflora	Rmu_co8208878.1_g000001 Rmu_sc0000307.1_g000005 Rmu_sc0013957.1_g000001 Rmu_sc0014614.1_g000004 Rmu_sc0024179.1_g000002 Rmu_ssc0000347.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155270 Rroxscaffold_3G00234310
rosa_rugosa	Rorug01G0461300 Rorug01G0461300 Rorug01G0461300 Rorug02G0380200 Rorug05G0211800 Rorug07G0226700
rosa_samantha	Rh2AG010200 Rh2BG010800 Rh2CG011700 Rh2DG012700 Rh7AG376500 Rh7AG376700 Rh7BG362200 Rh7CG395200 Rh7DG372200 Rh7DG372300
rosa_wichuraiana	Rw2G000910 Rw7G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	247
AclWI	GGATC	2 cut(s)	250, 281
AcoI	YGGCCR	1 cut(s)	141
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	2 cut(s)	11, 362
AluI	AGCT	2 cut(s)	11, 362
AlwI	GGATC	2 cut(s)	250, 281
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	141, 321
ApeKI	GCWGC	3 cut(s)	68, 166, 191
AspA2I	CCTAGG	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	39
AvrII	CCTAGG	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	55, 178, 178
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	317
BfaI	CTAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	40
BisI	GCNGC	3 cut(s)	69, 167, 192
BlnI	CCTAGG	1 cut(s)	32
BlsI	GCNGC	3 cut(s)	70, 168, 193
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	178
BpmI	CTGGAG	2 cut(s)	146, 236
BsaAI	YACGTR	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	32, 72, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	32, 72, 144
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	55, 178, 178
BshFI	GGCC	2 cut(s)	143, 323
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	143, 323
Bsp143I	GATC	3 cut(s)	209, 255, 286
BspANI	GGCC	2 cut(s)	143, 323
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	2 cut(s)	250, 281
BssECI	CCNNGG	3 cut(s)	32, 72, 144
BssMI	GATC	3 cut(s)	209, 255, 286
BssT1I	CCWWGG	3 cut(s)	32, 72, 144
Bst2UI	CCWGG	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	66, 86
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	64
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	212, 258, 289
BstMBI	GATC	3 cut(s)	209, 255, 286
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 149, 166, 299, 308
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	2 cut(s)	68, 198
BstSCI	CCNGG	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	55, 178, 178
BstX2I	RGATCY	2 cut(s)	255, 286
BstYI	RGATCY	2 cut(s)	255, 286
BsuRI	GGCC	2 cut(s)	143, 323
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	66, 86
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	3 cut(s)	65, 195, 239
CviJI	RGCY	8 cut(s)	11, 88, 143, 160, 191, 218, 323, 362
CviKI_1	RGCY	8 cut(s)	11, 88, 143, 160, 191, 218, 323, 362
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	3 cut(s)	211, 257, 288
DpnII	GATC	3 cut(s)	209, 255, 286
EaeI	YGGCCR	1 cut(s)	141
Eco130I	CCWWGG	3 cut(s)	32, 72, 144
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	3 cut(s)	32, 72, 144
ErhI	CCWWGG	3 cut(s)	32, 72, 144
FaeI	CATG	3 cut(s)	68, 198, 242
FaiI	YATR	7 cut(s)	50, 66, 93, 185, 196, 240, 279
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	3 cut(s)	64, 194, 238
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	69, 167, 192
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	3 cut(s)	69, 167, 192
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	3 cut(s)	69, 167, 192
GsuI	CTGGAG	2 cut(s)	146, 236
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	2 cut(s)	143, 323
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	68, 198, 242
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	120, 249
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	209, 340
Hpy188III	TCNNGA	2 cut(s)	124, 253
Hpy8I	GTNNAC	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	5 cut(s)	64, 194, 242, 302, 373
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 149, 166, 299, 308
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	3 cut(s)	68, 198, 242
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	209, 255, 286
LmnI	GCTCC	2 cut(s)	76, 165
LpnPI	CCDG	9 cut(s)	65, 158, 176, 198, 266, 302, 303, 329, 348
Lsp1109I	GCAGC	3 cut(s)	55, 178, 178
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	244
MalI	GATC	3 cut(s)	211, 257, 288
MboI	GATC	3 cut(s)	209, 255, 286
MboII	GAAGA	1 cut(s)	17
MflI	RGATCY	2 cut(s)	255, 286
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	1 cut(s)	136
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	129, 243
MnlI	CCTC	2 cut(s)	48, 313
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	5 cut(s)	85, 149, 166, 299, 308
NdeII	GATC	3 cut(s)	209, 255, 286
NlaIII	CATG	3 cut(s)	68, 198, 242
NlaIV	GGNNCC	1 cut(s)	161
NspI	RCATGY	2 cut(s)	68, 198
PaeI	GCATGC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	375
PfoI	TCCNGGA	1 cut(s)	315
PkrI	GCNGC	3 cut(s)	70, 168, 193
PleI	GAGTC	2 cut(s)	128, 243
PpsI	GAGTC	2 cut(s)	128, 243
Ppu21I	YACGTR	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	255, 286
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	3 cut(s)	69, 167, 192
Sau3AI	GATC	3 cut(s)	209, 255, 286
SchI	GAGTC	2 cut(s)	129, 243
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	5 cut(s)	13, 150, 177, 247, 364
SfaNI	GCATC	1 cut(s)	178
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	1 cut(s)	136
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	3 cut(s)	32, 72, 144
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	367
TasI	AATT	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	3 cut(s)	68, 166, 191
TspRI	CASTG	1 cut(s)	184
XceI	RCATGY	2 cut(s)	68, 198
XmaJI	CCTAGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	247
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.