Rroxscaffold_3G00234310

Signal recognition particle receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002654
Physical Location & Seq
Forward (+)
20608774 .. 20610925
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234310.1

Sequence Viewer

Length: 828 bp
ATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAGCTTTGTGAATCAGTGGCAGCTAGTCTCGAGGGTAAAAAGTTGGGTTCATTTACAAGAATATCTTCTACTGTTCAGGCAGCAATGGAAGAAGCTCTTGTTCGTATATTAACCCCTAGGCGCTCTATTGATATACTGAGGGACGTGCATGCTGCCAAGGAGCAAAGGAAACCTTATGTTGTTGCTTTTGTTGGTGTCAATGGAGTCGGGAAATCTACTAATTTGGCCAAGGTTGCTTATTGGCTTCAGCAGCATCAGGTCAGTGTTATGATGGCTGCCTGTGATACATTCCGATCAGGGGCTGTTGAGCAACTGCGTACTCATGCACGTAGACTCCAGATCCCTATTTTTGAAAAGGGATATGAGAAAGATCCTGCTGTTGTTGCTAAGGAAGCAATCCAGGAGGCCACACTGAATGGTTCTGATGTGGTTCTTGTTGATACAGCTGGTCGAATGCAGGATAATGAACCATTAATGAGGGCACTGTCAAAGCTTATCTACATTAACAATCCAGATCTTGTCTTGTTTGTTGGAGAGGCATTGGTTGGGAATGATGCTGTTGATCAGCTTTCAAAGTTTAATCAGAAACTGGCTGATCTCTCACCTTCACCCAGCCCCAGATTGATAGATGGAATATTACTCACTAAGTTTGATACTATTGACGATAAGGTTGGAGCTGCACTGTCCATGGTTTACATATCTGGAGCCCCGGTCGTGTTTGTTGGGTGTGGGCAGTCCTATACAGACCTCAAAAAGTTGAATGTGAAATCAATTGTGAAGACTCTCCTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP-alpha_N SRP54 SRP54_N

Protein Analysis

275

Amino Acids

29.97

Weight (kDa)

8.64

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54 PF00448 70 - 274 4.5e-57 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 364
AclWI GGATC 2 cut(s) 367, 398
AcoI YGGCCR 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 3 cut(s) 386, 606, 793
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 8 cut(s) 29, 37, 56, 128, 479, 526, 601, 710
AluI AGCT 8 cut(s) 29, 37, 56, 128, 479, 526, 601, 710
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 2 cut(s) 367, 398
AlwNI CAGNNNCTG 2 cut(s) 335, 622
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 2 cut(s) 258, 438
ApeKI GCWGC 6 cut(s) 53, 113, 185, 283, 308, 710
AseI ATTAAT 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 97
AspA2I CCTAGG 1 cut(s) 149
AspLEI GCGC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 743
AsuHPI GGTGA 2 cut(s) 627, 633
AvaI CYCGRG 1 cut(s) 62
AvrII CCTAGG 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 517
BalI TGGCCA 1 cut(s) 260
BanII GRGCYC 1 cut(s) 742
BbsI GAAGAC 1 cut(s) 818
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 6 cut(s) 65, 125, 172, 295, 295, 697
BccI CCATC 2 cut(s) 298, 656
BciT130I CCWGG 1 cut(s) 434
BclI TGATCA 1 cut(s) 595
BcnI CCSGG 1 cut(s) 743
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 2 cut(s) 57, 150
BfoI RGCGCY 1 cut(s) 157
BglII AGATCT 1 cut(s) 547
BisI GCNGC 6 cut(s) 54, 114, 186, 284, 309, 711
BlnI CCTAGG 1 cut(s) 149
BlsI GCNGC 6 cut(s) 55, 115, 187, 285, 310, 712
Bme1390I CCNGG 2 cut(s) 434, 743
BmeT110I CYCGRG 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 739
BmrFI CCNGG 2 cut(s) 434, 743
BmsI GCATC 2 cut(s) 295, 577
BpiI GAAGAC 1 cut(s) 818
BpmI CTGGAG 2 cut(s) 353, 756
Bpu10I CCTNAGC 2 cut(s) 18, 420
BpuMI CCSGG 1 cut(s) 743
BsaAI YACGTR 1 cut(s) 362
BsaJI CCNNGG 5 cut(s) 149, 189, 261, 720, 741
BsaXI ACNNNNNCTCC 4 cut(s) 351, 381, 729, 759
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 627
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 5 cut(s) 149, 189, 261, 720, 741
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 3 cut(s) 9, 21, 161
BseNI ACTGG 1 cut(s) 627
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 6 cut(s) 65, 125, 172, 295, 295, 697
BseYI CCCAGC 1 cut(s) 644
BsgI GTGCAG 1 cut(s) 696
Bsh1285I CGRYCG 1 cut(s) 747
BshFI GGCC 2 cut(s) 260, 440
BsiEI CGRYCG 1 cut(s) 747
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 1 cut(s) 743
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 2 cut(s) 260, 440
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 517, 742
Bsp143I GATC 6 cut(s) 326, 372, 403, 547, 595, 628
Bsp19I CCATGG 1 cut(s) 720
BspANI GGCC 2 cut(s) 260, 440
BspCNI CTCAG 3 cut(s) 10, 22, 162
BspLI GGNNCC 1 cut(s) 739
BspPI GGATC 2 cut(s) 367, 398
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 5 cut(s) 149, 189, 261, 720, 741
BssMI GATC 6 cut(s) 326, 372, 403, 547, 595, 628
BssT1I CCWWGG 4 cut(s) 149, 189, 261, 720
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 3 cut(s) 106, 519, 717
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 5 cut(s) 18, 30, 170, 420, 678
BstDSI CCRYGG 1 cut(s) 720
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 6 cut(s) 329, 375, 406, 550, 598, 631
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 6 cut(s) 326, 372, 403, 547, 595, 628
BstMCI CGRYCG 1 cut(s) 747
BstMWI GCNNNNNNNGC 4 cut(s) 266, 283, 416, 425
BstNI CCWGG 1 cut(s) 434
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 432, 741
BstSLI GKGCMC 1 cut(s) 517
BstV1I GCAGC 6 cut(s) 65, 125, 172, 295, 295, 697
BstV2I GAAGAC 1 cut(s) 818
BstX2I RGATCY 3 cut(s) 372, 403, 547
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 3 cut(s) 372, 403, 547
BsuRI GGCC 2 cut(s) 260, 440
BtgI CCRYGG 1 cut(s) 720
BtrI CACGTC 1 cut(s) 178
BtsIMutI CAGTG 5 cut(s) 54, 301, 443, 515, 713
Cac8I GCNNGC 1 cut(s) 183
CaiI CAGNNNCTG 2 cut(s) 335, 622
CfoI GCGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 351
CviAII CATG 3 cut(s) 182, 356, 721
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 5 cut(s) 18, 30, 170, 420, 678
DpnI GATC 6 cut(s) 328, 374, 405, 549, 597, 630
DpnII GATC 6 cut(s) 326, 372, 403, 547, 595, 628
EaeI YGGCCR 1 cut(s) 258
Eco130I CCWWGG 4 cut(s) 149, 189, 261, 720
Eco24I GRGCYC 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 432
EcoT14I CCWWGG 4 cut(s) 149, 189, 261, 720
EcoT38I GRGCYC 1 cut(s) 742
ErhI CCWWGG 4 cut(s) 149, 189, 261, 720
FaeI CATG 3 cut(s) 185, 359, 724
FalI AAGNNNNNCTT 6 cut(s) 82, 114, 114, 146, 190, 222
FaqI GGGAC 1 cut(s) 188
FatI CATG 3 cut(s) 181, 355, 720
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 1 cut(s) 364
Fnu4HI GCNGC 6 cut(s) 54, 114, 186, 284, 309, 711
FriOI GRGCYC 1 cut(s) 742
Fsp4HI GCNGC 6 cut(s) 54, 114, 186, 284, 309, 711
FspBI CTAG 2 cut(s) 57, 150
GlaI GCGC 1 cut(s) 155
GluI GCNGC 6 cut(s) 54, 114, 186, 284, 309, 711
GsaI CCCAGC 1 cut(s) 648
GsuI CTGGAG 2 cut(s) 353, 756
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 2 cut(s) 260, 440
HapII CCGG 1 cut(s) 743
HhaI GCGC 1 cut(s) 156
Hin1II CATG 3 cut(s) 185, 359, 724
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 2 cut(s) 35, 524
HinfI GANTC 4 cut(s) 44, 237, 366, 814
HpaII CCGG 1 cut(s) 743
HphI GGTGA 2 cut(s) 627, 633
Hpy166II GTNNAC 2 cut(s) 365, 727
Hpy188I TCNGA 3 cut(s) 326, 457, 618
Hpy188III TCNNGA 6 cut(s) 62, 241, 370, 545, 735, 820
Hpy8I GTNNAC 2 cut(s) 365, 727
HpyAV CCTTC 1 cut(s) 648
HpyCH4III ACNGT 3 cut(s) 106, 519, 717
HpyCH4IV ACGT 2 cut(s) 177, 361
HpyCH4V TGCA 4 cut(s) 181, 359, 490, 713
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 283, 416, 425
HpyF3I CTNAG 5 cut(s) 18, 30, 170, 420, 678
HpySE526I ACGT 2 cut(s) 177, 361
Hsp92II CATG 3 cut(s) 185, 359, 724
HspAI GCGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 6 cut(s) 326, 372, 403, 547, 595, 628
LmnI GCTCC 3 cut(s) 193, 707, 737
Lsp1109I GCAGC 6 cut(s) 65, 125, 172, 295, 295, 697
LweI GCATC 2 cut(s) 295, 577
MaeI CTAG 2 cut(s) 57, 150
MaeII ACGT 2 cut(s) 177, 361
MalI GATC 6 cut(s) 328, 374, 405, 549, 597, 630
MboI GATC 6 cut(s) 326, 372, 403, 547, 595, 628
MboII GAAGA 3 cut(s) 90, 134, 823
MfeI CAATTG 1 cut(s) 804
MflI RGATCY 3 cut(s) 372, 403, 547
MhlI GDGCHC 2 cut(s) 517, 742
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 2 cut(s) 253, 804
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 3 cut(s) 246, 360, 808
MmeI TCCRAC 2 cut(s) 544, 685
MnlI CCTC 7 cut(s) 13, 58, 165, 430, 504, 562, 791
Mox20I TGGCCA 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 97
MscI TGGCCA 1 cut(s) 260
MseI TTAA 4 cut(s) 143, 506, 537, 612
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 1 cut(s) 743
MspR9I CCNGG 2 cut(s) 434, 743
MunI CAATTG 1 cut(s) 804
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 266, 283, 416, 425
NciI CCSGG 1 cut(s) 743
NcoI CCATGG 1 cut(s) 720
NdeII GATC 6 cut(s) 326, 372, 403, 547, 595, 628
NlaIII CATG 3 cut(s) 185, 359, 724
NlaIV GGNNCC 1 cut(s) 739
NspI RCATGY 1 cut(s) 185
PaeI GCATGC 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 62
PctI GAATGC 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 44
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 6 cut(s) 55, 115, 187, 285, 310, 712
PleI GAGTC 3 cut(s) 245, 360, 808
PpsI GAGTC 3 cut(s) 245, 360, 808
Ppu21I YACGTR 1 cut(s) 362
PshBI ATTAAT 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 432
PspFI CCCAGC 1 cut(s) 644
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 739
PstNI CAGNNNCTG 2 cut(s) 335, 622
PsuI RGATCY 3 cut(s) 372, 403, 547
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SaqAI TTAA 4 cut(s) 143, 506, 537, 612
SatI GCNGC 6 cut(s) 54, 114, 186, 284, 309, 711
Sau3AI GATC 6 cut(s) 326, 372, 403, 547, 595, 628
SchI GAGTC 3 cut(s) 246, 360, 808
ScrFI CCNGG 2 cut(s) 434, 743
SduI GDGCHC 2 cut(s) 517, 742
SfaNI GCATC 2 cut(s) 295, 577
Sfr274I CTCGAG 1 cut(s) 62
SlaI CTCGAG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SphI GCATGC 1 cut(s) 185
Sse9I AATT 2 cut(s) 253, 804
SspI AATATT 1 cut(s) 669
SspMI CTAG 2 cut(s) 57, 150
StyD4I CCNGG 2 cut(s) 432, 741
StyI CCWWGG 4 cut(s) 149, 189, 261, 720
TaaI ACNGT 3 cut(s) 106, 519, 717
TaiI ACGT 2 cut(s) 180, 364
TaqI TCGA 2 cut(s) 63, 484
TasI AATT 2 cut(s) 253, 804
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 4 cut(s) 143, 506, 537, 612
Tru9I TTAA 4 cut(s) 143, 506, 537, 612
TscAI CASTG 5 cut(s) 54, 301, 450, 522, 720
TseI GCWGC 6 cut(s) 53, 113, 185, 283, 308, 710
TspDTI ATGAA 2 cut(s) 72, 513
TspRI CASTG 5 cut(s) 54, 301, 450, 522, 720
VspI ATTAAT 1 cut(s) 506
XceI RCATGY 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 62
XmaJI CCTAGG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 2 cut(s) 57, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.