Rh7AG376700

Signal recognition particle receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002654
Physical Location & Seq
Forward (+)
48902949 .. 48911398
8450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG376700.1

Sequence Viewer

Length: 612 bp
ATGAATGATGCAACCCATGTAGCATTCAAAAATCAAGAAGAGCATCAATTAAATATTGCAGGCAAGGGAAACTTGGAGAGGTCAGATCTGGAACCAGCTTTAAAAGCTCTGAAGCTCATGACCAAGAATGTGGTTGCTTATTGGCTTCAGCAGCATCAGGTCAGTGTTATGATGGCTGCCTGTGATACATTCCAATCAGGGGCTGTTGAGCAACTGCGTACTCATGCGCGTAGACTCCAGATCCCTATTTTTGAAAAGGGATATGAGAAAGATCCTGCTGTTGTTGCTAAGGAAGCAATCCAGGAGGCCACACTGAATGGTTCTGATGTGGTTCTTGTTGATACAGCTGGTCGAATGCAGGATAATGAACCATTAATGAGGGCACTGTCAAAGCTTATCTACATTAACAATCCAGATCTTGTCTTGTTTGTTGGAGAGGCATTGGTTGGGAATGATGCTGTTGATCAGCTTTCAAAGTTTAATCAGGTTGGAGCTGCACTGTCCATGGTTTACATATCTGGAGCCCCAGTCATGTTTGTTGGGTGTGGACAGTCCTATACAGACCTCAAAAAGTTGAATGTGAAATCAATTGTGAAGACTCTCCTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP-alpha_N SRP54 SRP54_N

Protein Analysis

203

Amino Acids

22.32

Weight (kDa)

6.42

Isoelectric Point (pI)

23.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54 PF00448 45 - 202 1.3e-37 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 232
AccII CGCG 1 cut(s) 229
AclWI GGATC 2 cut(s) 235, 266
AcuI CTGAAG 2 cut(s) 131, 131
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 4 cut(s) 28, 254, 474, 577
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 7 cut(s) 98, 107, 115, 347, 394, 469, 494
AluI AGCT 7 cut(s) 98, 107, 115, 347, 394, 469, 494
AlwI GGATC 2 cut(s) 235, 266
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 3 cut(s) 151, 176, 494
AseI ATTAAT 1 cut(s) 374
AspLEI GCGC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 385
BanII GRGCYC 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 602
BbvI GCAGC 3 cut(s) 163, 163, 481
BccI CCATC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 463
BglII AGATCT 2 cut(s) 85, 415
BisI GCNGC 3 cut(s) 152, 177, 495
BlsI GCNGC 3 cut(s) 153, 178, 496
Bme1390I CCNGG 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 93, 523
BmrFI CCNGG 1 cut(s) 302
BmrI ACTGGG 1 cut(s) 521
BmsI GCATC 3 cut(s) 52, 163, 445
BmuI ACTGGG 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 602
BpmI CTGGAG 2 cut(s) 221, 540
Bpu10I CCTNAGC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 527
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 504
BseLI CCNNNNNNNGG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 3 cut(s) 163, 163, 481
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 199
BsmI GAATGC 2 cut(s) 23, 360
BsnI GGCC 1 cut(s) 308
Bsp1286I GDGCHC 2 cut(s) 385, 526
Bsp143I GATC 5 cut(s) 85, 240, 271, 415, 463
Bsp19I CCATGG 1 cut(s) 504
BspANI GGCC 1 cut(s) 308
BspFNI CGCG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 93, 523
BspPI GGATC 2 cut(s) 235, 266
BspQI GCTCTTC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 527
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 5 cut(s) 85, 240, 271, 415, 463
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 3 cut(s) 387, 501, 552
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 504
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 5 cut(s) 88, 243, 274, 418, 466
BstMBI GATC 5 cut(s) 85, 240, 271, 415, 463
BstMWI GCNNNNNNNGC 4 cut(s) 104, 151, 284, 293
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 385
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 3 cut(s) 163, 163, 481
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 4 cut(s) 85, 240, 271, 415
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 4 cut(s) 85, 240, 271, 415
BsuRI GGCC 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 504
BtsIMutI CAGTG 4 cut(s) 169, 311, 383, 497
Cac8I GCNNGC 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 117
CfoI GCGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 219
CviAII CATG 5 cut(s) 17, 118, 224, 505, 532
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 1 cut(s) 288
DpnI GATC 5 cut(s) 87, 242, 273, 417, 465
DpnII GATC 5 cut(s) 85, 240, 271, 415, 463
DraI TTTAAA 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 131, 131
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 526
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 5 cut(s) 20, 121, 227, 508, 535
FaiI YATR 9 cut(s) 18, 119, 170, 225, 264, 506, 515, 533, 558
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 5 cut(s) 16, 117, 223, 504, 531
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 152, 177, 495
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 3 cut(s) 152, 177, 495
GlaI GCGC 1 cut(s) 228
GluI GCNGC 3 cut(s) 152, 177, 495
GsuI CTGGAG 2 cut(s) 221, 540
HaeIII GGCC 1 cut(s) 308
HhaI GCGC 1 cut(s) 229
Hin1II CATG 5 cut(s) 20, 121, 227, 508, 535
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 2 cut(s) 234, 598
Hpy166II GTNNAC 3 cut(s) 233, 511, 548
Hpy188I TCNGA 3 cut(s) 85, 111, 325
Hpy188III TCNNGA 7 cut(s) 35, 89, 118, 238, 413, 519, 604
Hpy8I GTNNAC 3 cut(s) 233, 511, 548
HpyCH4III ACNGT 3 cut(s) 387, 501, 552
HpyCH4V TGCA 4 cut(s) 11, 59, 358, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 151, 284, 293
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 5 cut(s) 20, 121, 227, 508, 535
HspAI GCGC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 5 cut(s) 85, 240, 271, 415, 463
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 491, 521
Lsp1109I GCAGC 3 cut(s) 163, 163, 481
LweI GCATC 3 cut(s) 52, 163, 445
MalI GATC 5 cut(s) 87, 242, 273, 417, 465
MboI GATC 5 cut(s) 85, 240, 271, 415, 463
MboII GAAGA 2 cut(s) 50, 607
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 4 cut(s) 85, 240, 271, 415
MhlI GDGCHC 2 cut(s) 385, 526
MluCI AATT 2 cut(s) 47, 588
MlyI GAGTC 2 cut(s) 228, 592
MmeI TCCRAC 2 cut(s) 412, 469
MnlI CCTC 5 cut(s) 72, 298, 372, 430, 575
MseI TTAA 5 cut(s) 50, 101, 374, 405, 480
MspA1I CMGCKG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 588
Mva1269I GAATGC 2 cut(s) 23, 360
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 4 cut(s) 104, 151, 284, 293
NcoI CCATGG 1 cut(s) 504
NdeII GATC 5 cut(s) 85, 240, 271, 415, 463
NlaIII CATG 5 cut(s) 20, 121, 227, 508, 535
NlaIV GGNNCC 2 cut(s) 93, 523
PagI TCATGA 1 cut(s) 117
PciSI GCTCTTC 1 cut(s) 33
PctI GAATGC 2 cut(s) 23, 360
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 3 cut(s) 153, 178, 496
PleI GAGTC 2 cut(s) 228, 592
PpsI GAGTC 2 cut(s) 228, 592
PshBI ATTAAT 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 93, 523
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 4 cut(s) 85, 240, 271, 415
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 5 cut(s) 50, 101, 374, 405, 480
SatI GCNGC 3 cut(s) 152, 177, 495
Sau3AI GATC 5 cut(s) 85, 240, 271, 415, 463
SchI GAGTC 2 cut(s) 228, 592
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 2 cut(s) 385, 526
SfaNI GCATC 3 cut(s) 52, 163, 445
Sse9I AATT 2 cut(s) 47, 588
SspI AATATT 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 3 cut(s) 387, 501, 552
TaqI TCGA 1 cut(s) 352
TasI AATT 2 cut(s) 47, 588
Tru1I TTAA 5 cut(s) 50, 101, 374, 405, 480
Tru9I TTAA 5 cut(s) 50, 101, 374, 405, 480
TscAI CASTG 4 cut(s) 169, 318, 390, 504
TseI GCWGC 3 cut(s) 151, 176, 494
TspDTI ATGAA 2 cut(s) 17, 381
TspRI CASTG 4 cut(s) 169, 318, 390, 504
VspI ATTAAT 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.