Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002654

Physical Location & Seq

Genomic Coordinates Forward (+)

9228791 .. 9230766

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13570.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAAAGGCCGTAAATTGGAGAATGGGATCTCCAATGGTAATCACGTGGATTTCAAAGAATCTAATGGTACTGCTAACGGAAAAGAAAATACTAGTTCCAATCTTGGGGCTTTTGATGTAAATAAGCTTCAGAAACTTAGGTCGAAGGCTGGGAAGAAGACAGAAAAAACAGCTACTGTTGATAGCAAGGGCTCCAAGGCTGAGCCAAAAAAGAAGATAACAAAGAAGAATAGAGTTTGGGATGATAAACCTCCTGAGTCGAAACTGGATTTTACGGATCCTGTGGGTGAGAATGGAGACAACAATATTGAGGTCGTGGCAGCAGATCATGGTGAAAGTATGATGGACAAAGAAGAGGATTTCAGTAGTGAAAGTGAGGAGGAAGAGGAAGAGGATGTTGGGAAGGAAAGCAAGCCTGATAAGCAAAAGAAGGGGTGGTTTTCATCTATGTTCCAGAGTATTGCTGGCAAGGCAAACTTGGAGAGGTCTGACCTGGAACCAGCTTTGAAAGCTCTCAAGGATAGGCTCATGACTAAGAACGTGGCCGAGGAGATTGCTGAGAAGCTTTGTGAATCAGTGGCAGCTAGTCTTGAGGGGAAAAAGCTGGCTTCGTTCACAAGAATATCTTCTACTGTGCAGACTGCGATGGAAGATGCCCTTGTTCGTATTTTAACTCCCAGGCGCTCTATTGATATACTGAGGGATGTGCATGCTGCCAAGGAACAAAGGAAGCCGTATGTCGTCGTTTTTGTTGGTGTCAATGGAGTGGGGAAATCTACCAATTTGGCTAAGGTTGCTTATTGGCTTCAACAGCATAACGTCAGTGTTATGATGGCTGCCTGCGATACATTTCGATCTGGAGCTGTGGAGCAGCTGCGTACTCATGCACGTAGACTCCAGATCCCTATTTTTGAGAAGGGATACGAGAAAGATCCTGCTGTCGTGGCTAAGGAAGCAATCCAGGAGGCCACACACAATGGTTCTGATGTGGTTCTTGTTGATACTGCTGGTCGTATGCAGGATAATGAACCATTGATGAGGGCACTGTCAAAGCTTGTCAATCTTAACAACCCAGATCGATCTTGTCTTGTTCGTTGGAGAGGCACTGGTTGGGAACGATGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP-alpha_N SRP54 SRP54_N

Protein Analysis

376

Amino Acids

41.6

Weight (kDa)

8.11

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30600 AT4G30600
fragaria_vesca	FvH4_1g00830 FvH4_2g11040
malus_domestica	MD02G1006600.v1.1 MD15G1151700.v1.1
prunus_persica	Prupe.7G264100_v2.0.a1
pyrus_communis	pycom02g00550 pycom02g00560 pycom15g13570
rosa_chinensis	RchiOBHm_Chr2g0085561 RchiOBHm_Chr7g0224871 RchiOBHm_Chr7g0224891
rosa_laevigata	RLG00000015699
rosa_multiflora	Rmu_co8208878.1_g000001 Rmu_sc0000307.1_g000005 Rmu_sc0013957.1_g000001 Rmu_sc0014614.1_g000004 Rmu_sc0024179.1_g000002 Rmu_ssc0000347.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155270 Rroxscaffold_3G00234310
rosa_rugosa	Rorug01G0461300 Rorug01G0461300 Rorug01G0461300 Rorug02G0380200 Rorug05G0211800 Rorug07G0226700
rosa_samantha	Rh2AG010200 Rh2BG010800 Rh2CG011700 Rh2DG012700 Rh7AG376500 Rh7AG376700 Rh7BG362200 Rh7CG395200 Rh7DG372200 Rh7DG372300
rosa_wichuraiana	Rw2G000910 Rw7G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	892
AclWI	GGATC	5 cut(s)	35, 272, 285, 895, 926
AcoI	YGGCCR	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	113
AcvI	CACGTG	1 cut(s)	46
AfaI	GTAC	2 cut(s)	70, 880
AfiI	CCNNNNNNNGG	2 cut(s)	16, 105
AgsI	TTSAA	3 cut(s)	55, 508, 809
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	3 cut(s)	492, 677, 960
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	5 cut(s)	35, 272, 285, 895, 926
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	7, 543, 966
ApeKI	GCWGC	6 cut(s)	320, 581, 713, 836, 871, 874
Asp700I	GAANNNNTTC	1 cut(s)	625
AspLEI	GCGC	1 cut(s)	684
AsuHPI	GGTGA	2 cut(s)	299, 344
BaeGI	GKGCMC	1 cut(s)	1045
BamHI	GGATCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	194
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
BbrPI	CACGTG	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	6 cut(s)	332, 593, 700, 823, 861, 883
BccI	CCATC	3 cut(s)	337, 640, 826
BceAI	ACGGC	1 cut(s)	718
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	3 cut(s)	494, 679, 962
BciVI	GTATCC	1 cut(s)	914
BcoDI	GTCTC	1 cut(s)	291
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	2 cut(s)	93, 585
BfoI	RGCGCY	1 cut(s)	685
BfuI	GTATCC	1 cut(s)	914
BisI	GCNGC	6 cut(s)	321, 582, 714, 837, 872, 875
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	6 cut(s)	322, 583, 715, 838, 873, 876
Bme1390I	CCNGG	3 cut(s)	494, 679, 962
BmiI	GGNNCC	3 cut(s)	193, 279, 498
BmrFI	CCNGG	3 cut(s)	494, 679, 962
BmsI	GCATC	2 cut(s)	643, 1109
BpiI	GAAGAC	1 cut(s)	164
BpmI	CTGGAG	2 cut(s)	879, 881
Bpu10I	CCTNAGC	2 cut(s)	789, 948
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	500, 611
Bsa29I	ATCGAT	1 cut(s)	1078
BsaAI	YACGTR	2 cut(s)	46, 890
BsaJI	CCNNGG	4 cut(s)	195, 546, 677, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	879, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 105
Bse1I	ACTGG	2 cut(s)	270, 1111
BseBI	CCWGG	3 cut(s)	494, 679, 962
BseCI	ATCGAT	1 cut(s)	1078
BseDI	CCNNGG	4 cut(s)	195, 546, 677, 717
BseGI	GGATG	3 cut(s)	247, 400, 709
BseLI	CCNNNNNNNGG	2 cut(s)	16, 105
BseMII	CTCAG	4 cut(s)	192, 246, 549, 689
BseNI	ACTGG	2 cut(s)	270, 1111
BseRI	GAGGAG	2 cut(s)	392, 563
BseSI	GKGCMC	1 cut(s)	1045
BseXI	GCAGC	6 cut(s)	332, 593, 700, 823, 861, 883
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	656
BshFI	GGCC	3 cut(s)	9, 545, 968
BshVI	ATCGAT	1 cut(s)	1078
BslI	CCNNNNNNNGG	2 cut(s)	16, 105
BsmAI	GTCTC	1 cut(s)	291
BsnI	GGCC	3 cut(s)	9, 545, 968
Bsp1286I	GDGCHC	2 cut(s)	194, 1045
Bsp143I	GATC	8 cut(s)	27, 277, 325, 854, 900, 931, 1075, 1079
Bsp1720I	GCTNAGC	1 cut(s)	201
BspANI	GGCC	3 cut(s)	9, 545, 968
BspCNI	CTCAG	4 cut(s)	193, 247, 550, 690
BspDI	ATCGAT	1 cut(s)	1078
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	3 cut(s)	193, 279, 498
BspPI	GGATC	5 cut(s)	35, 272, 285, 895, 926
BsrI	ACTGG	2 cut(s)	270, 1111
BssECI	CCNNGG	4 cut(s)	195, 546, 677, 717
BssMI	GATC	8 cut(s)	27, 277, 325, 854, 900, 931, 1075, 1079
BssT1I	CCWWGG	2 cut(s)	195, 717
Bst2UI	CCWGG	3 cut(s)	494, 679, 962
Bst4CI	ACNGT	3 cut(s)	178, 634, 1047
Bst6I	CTCTTC	3 cut(s)	348, 378, 384
BstBAI	YACGTR	2 cut(s)	46, 890
BstC8I	GCNNGC	5 cut(s)	413, 466, 606, 711, 841
BstDEI	CTNAG	8 cut(s)	137, 201, 255, 534, 558, 698, 789, 948
BstF5I	GGATG	3 cut(s)	247, 400, 709
BstH2I	RGCGCY	1 cut(s)	685
BstHHI	GCGC	1 cut(s)	684
BstKTI	GATC	8 cut(s)	30, 280, 328, 857, 903, 934, 1078, 1082
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	8 cut(s)	27, 277, 325, 854, 900, 931, 1075, 1079
BstMWI	GCNNNNNNNGC	7 cut(s)	421, 470, 509, 794, 811, 944, 953
BstNI	CCWGG	3 cut(s)	494, 679, 962
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	3 cut(s)	492, 677, 960
BstSLI	GKGCMC	1 cut(s)	1045
BstV1I	GCAGC	6 cut(s)	332, 593, 700, 823, 861, 883
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	4 cut(s)	27, 277, 900, 931
BstYI	RGATCY	4 cut(s)	27, 277, 900, 931
Bsu15I	ATCGAT	1 cut(s)	1078
BsuI	GTATCC	1 cut(s)	914
BsuRI	GGCC	3 cut(s)	9, 545, 968
BsuTUI	ATCGAT	1 cut(s)	1078
BtgZI	GCGATG	1 cut(s)	659
BtsCI	GGATG	3 cut(s)	247, 400, 709
BtsIMutI	CAGTG	4 cut(s)	582, 829, 1043, 1104
Cac8I	GCNNGC	5 cut(s)	413, 466, 606, 711, 841
CaiI	CAGNNNCTG	1 cut(s)	176
CciI	TCATGA	1 cut(s)	528
CfoI	GCGC	1 cut(s)	684
ClaI	ATCGAT	1 cut(s)	1078
Csp6I	GTAC	2 cut(s)	69, 879
CviAII	CATG	4 cut(s)	329, 529, 710, 884
CviQI	GTAC	2 cut(s)	69, 879
DdeI	CTNAG	8 cut(s)	137, 201, 255, 534, 558, 698, 789, 948
DpnI	GATC	8 cut(s)	29, 279, 327, 856, 902, 933, 1077, 1081
DpnII	GATC	8 cut(s)	27, 277, 325, 854, 900, 931, 1075, 1079
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	3 cut(s)	348, 378, 384
EarI	CTCTTC	3 cut(s)	348, 378, 384
Eco130I	CCWWGG	2 cut(s)	195, 717
Eco24I	GRGCYC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	113
Eco72I	CACGTG	1 cut(s)	46
EcoRII	CCWGG	3 cut(s)	492, 677, 960
EcoT14I	CCWWGG	2 cut(s)	195, 717
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	2 cut(s)	195, 717
FaeI	CATG	4 cut(s)	332, 532, 713, 887
FalI	AAGNNNNNCTT	6 cut(s)	461, 493, 610, 642, 642, 674
FatI	CATG	4 cut(s)	328, 528, 709, 883
FblI	GTMKAC	1 cut(s)	892
Fnu4HI	GCNGC	6 cut(s)	321, 582, 714, 837, 872, 875
FokI	GGATG	3 cut(s)	254, 407, 716
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	6 cut(s)	321, 582, 714, 837, 872, 875
FspBI	CTAG	2 cut(s)	93, 585
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	6 cut(s)	321, 582, 714, 837, 872, 875
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	2 cut(s)	879, 881
HaeII	RGCGCY	1 cut(s)	685
HaeIII	GGCC	3 cut(s)	9, 545, 968
HhaI	GCGC	1 cut(s)	684
Hin1II	CATG	4 cut(s)	332, 532, 713, 887
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HindIII	AAGCTT	3 cut(s)	125, 563, 1052
HinfI	GANTC	4 cut(s)	59, 257, 572, 894
HphI	GGTGA	2 cut(s)	299, 344
Hpy166II	GTNNAC	2 cut(s)	615, 893
Hpy188I	TCNGA	3 cut(s)	132, 490, 985
Hpy188III	TCNNGA	6 cut(s)	254, 454, 529, 590, 858, 898
Hpy8I	GTNNAC	2 cut(s)	615, 893
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	4 cut(s)	139, 397, 424, 910
HpyCH4III	ACNGT	3 cut(s)	178, 634, 1047
HpyCH4IV	ACGT	4 cut(s)	45, 540, 819, 889
HpyCH4V	TGCA	4 cut(s)	637, 709, 887, 1018
HpyF10VI	GCNNNNNNNGC	7 cut(s)	421, 470, 509, 794, 811, 944, 953
HpyF3I	CTNAG	8 cut(s)	137, 201, 255, 534, 558, 698, 789, 948
HpySE526I	ACGT	4 cut(s)	45, 540, 819, 889
Hsp92II	CATG	4 cut(s)	332, 532, 713, 887
HspAI	GCGC	1 cut(s)	682
Kzo9I	GATC	8 cut(s)	27, 277, 325, 854, 900, 931, 1075, 1079
LmnI	GCTCC	3 cut(s)	197, 860, 868
Lsp1109I	GCAGC	6 cut(s)	332, 593, 700, 823, 861, 883
LweI	GCATC	2 cut(s)	643, 1109
MaeI	CTAG	2 cut(s)	93, 585
MaeII	ACGT	4 cut(s)	45, 540, 819, 889
MalI	GATC	8 cut(s)	29, 279, 327, 856, 902, 933, 1077, 1081
MboI	GATC	8 cut(s)	27, 277, 325, 854, 900, 931, 1075, 1079
MboII	GAAGA	9 cut(s)	166, 169, 226, 238, 365, 395, 401, 618, 662
MflI	RGATCY	4 cut(s)	27, 277, 900, 931
MhlI	GDGCHC	2 cut(s)	194, 1045
MluCI	AATT	2 cut(s)	14, 781
MlyI	GAGTC	2 cut(s)	266, 888
MmeI	TCCRAC	1 cut(s)	1076
MroXI	GAANNNNTTC	1 cut(s)	625
MseI	TTAA	2 cut(s)	671, 1065
MspA1I	CMGCKG	1 cut(s)	874
MspR9I	CCNGG	3 cut(s)	494, 679, 962
MvaI	CCWGG	3 cut(s)	494, 679, 962
MwoI	GCNNNNNNNGC	7 cut(s)	421, 470, 509, 794, 811, 944, 953
NdeII	GATC	8 cut(s)	27, 277, 325, 854, 900, 931, 1075, 1079
NlaIII	CATG	4 cut(s)	332, 532, 713, 887
NlaIV	GGNNCC	3 cut(s)	193, 279, 498
NmeAIII	GCCGAG	1 cut(s)	571
NspI	RCATGY	1 cut(s)	713
PaeI	GCATGC	1 cut(s)	713
PagI	TCATGA	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	59, 572
PfoI	TCCNGGA	1 cut(s)	960
PkrI	GCNGC	6 cut(s)	322, 583, 715, 838, 873, 876
PleI	GAGTC	2 cut(s)	265, 888
PmaCI	CACGTG	1 cut(s)	46
PmlI	CACGTG	1 cut(s)	46
PpsI	GAGTC	2 cut(s)	265, 888
Ppu21I	YACGTR	2 cut(s)	46, 890
Psp6I	CCWGG	3 cut(s)	492, 677, 960
PspCI	CACGTG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	3 cut(s)	492, 677, 960
PspN4I	GGNNCC	3 cut(s)	193, 279, 498
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	4 cut(s)	27, 277, 900, 931
PvuII	CAGCTG	1 cut(s)	874
RsaI	GTAC	2 cut(s)	70, 880
RsaNI	GTAC	2 cut(s)	69, 879
SaqAI	TTAA	2 cut(s)	671, 1065
SatI	GCNGC	6 cut(s)	321, 582, 714, 837, 872, 875
Sau3AI	GATC	8 cut(s)	27, 277, 325, 854, 900, 931, 1075, 1079
SchI	GAGTC	2 cut(s)	266, 888
ScrFI	CCNGG	3 cut(s)	494, 679, 962
SduI	GDGCHC	2 cut(s)	194, 1045
SfaNI	GCATC	2 cut(s)	643, 1109
SmlI	CTYRAG	2 cut(s)	515, 590
SmoI	CTYRAG	2 cut(s)	515, 590
SpeI	ACTAGT	1 cut(s)	92
SphI	GCATGC	1 cut(s)	713
Sse9I	AATT	2 cut(s)	14, 781
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	2 cut(s)	93, 585
StyD4I	CCNGG	3 cut(s)	492, 677, 960
StyI	CCWWGG	2 cut(s)	195, 717
TaaI	ACNGT	3 cut(s)	178, 634, 1047
TaiI	ACGT	4 cut(s)	48, 543, 822, 892
TaqI	TCGA	4 cut(s)	143, 260, 853, 1078
TasI	AATT	2 cut(s)	14, 781
TfiI	GAWTC	2 cut(s)	59, 572
Tru1I	TTAA	2 cut(s)	671, 1065
Tru9I	TTAA	2 cut(s)	671, 1065
TscAI	CASTG	4 cut(s)	582, 829, 1050, 1111
TseI	GCWGC	6 cut(s)	320, 581, 713, 836, 871, 874
TspDTI	ATGAA	3 cut(s)	17, 432, 1041
TspGWI	ACGGA	2 cut(s)	93, 290
TspRI	CASTG	4 cut(s)	582, 829, 1050, 1111
XceI	RCATGY	1 cut(s)	713
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	892
XmnI	GAANNNNTTC	1 cut(s)	625
XspI	CTAG	2 cut(s)	93, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.