Rh7DG372300

Signal recognition particle receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002654
Physical Location & Seq
Reverse (-)
50430176 .. 50430826
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG372300.1

Sequence Viewer

Length: 651 bp
ATGGTCAAGCACCAATTCTCACAGGTTTATGATCCGAAGAAGACGACTGTGTATAATGATTTTGATGAAACTTTCCGGCAGCTCAGGAAGGAGGCCGAGGCACCTGCTGATGAGTTGAAGAAGTCGAAGCAGGTGGGGAAGCCTGTGAGTAATGGTAGGAAGCAGGGGCAGCTGCAAAAGAGTGGACTTGGAAGAGAGAAGAAGAATAATGAAGGTGGTGATGGTGATAGTGTGAAGGGCCGTAAATTGGAGAATGGAATATCCAATGGTGGTCATGTTGTTGTCAGAGAATCTAATGTAGGTGGTACTGCTAATGGAAAAGAGAATACTAGTTCCAATCTTGGGGCTTTTGATGTAAATAAGCTTAAATCTAGATCTAAGGTTGGGAAGAAGACGGAAAAAACAGCTACCCTTGATAGCAAGGGCTCCAAGGCTGAGCTGAAAAGGAAGATAACCAAGAAAAATAGAGTTTGGGATGTTTCACCAAAAGAGGCGCCCGGGTCGAAATTGGATTTTACAGGTGCTGCAGGTGAGAATGCAGAGAACAATGTTGAGGCTGTGGCAGCATATCATGGTGAAAGTATGATGGATAGGGAAGAGGATTACAGTATTGAAAGTGAGGCTGAAGAGGAAGCTGGAAAGCAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP-alpha_N SRP54 SRP54_N

Protein Analysis

216

Amino Acids

23.53

Weight (kDa)

9.12

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP-alpha_N PF04086 1 - 205 4.9e-19 Signal recognition particle, alpha subunit, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 112, 121, 518
Acc36I ACCTGC 3 cut(s) 112, 121, 518
AccB1I GGYRCC 2 cut(s) 100, 493
AclWI GGATC 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 2 cut(s) 247, 342
AgsI TTSAA 2 cut(s) 118, 614
AhlI ACTAGT 1 cut(s) 329
AluBI AGCT 6 cut(s) 82, 172, 364, 407, 439, 635
AluI AGCT 6 cut(s) 82, 172, 364, 407, 439, 635
AlwI GGATC 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 2 cut(s) 93, 238
ApeKI GCWGC 5 cut(s) 79, 169, 172, 524, 563
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 2 cut(s) 498, 499
AsuHPI GGTGA 5 cut(s) 230, 236, 474, 542, 587
AvaI CYCGRG 1 cut(s) 497
BanI GGYRCC 2 cut(s) 100, 493
BanII GRGCYC 1 cut(s) 428
BbsI GAAGAC 2 cut(s) 47, 398
BbvI GCAGC 5 cut(s) 91, 159, 181, 511, 575
BccI CCATC 2 cut(s) 215, 580
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcnI CCSGG 2 cut(s) 498, 499
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 2 cut(s) 330, 372
BfmI CTRYAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 497
BfuAI ACCTGC 3 cut(s) 112, 121, 518
BglII AGATCT 1 cut(s) 374
BisI GCNGC 5 cut(s) 80, 170, 173, 525, 564
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 5 cut(s) 81, 171, 174, 526, 565
Bme1390I CCNGG 2 cut(s) 498, 499
BmeT110I CYCGRG 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 3 cut(s) 102, 427, 495
BmrFI CCNGG 2 cut(s) 498, 499
BpiI GAAGAC 2 cut(s) 47, 398
Bpu10I CCTNAGC 1 cut(s) 83
Bpu1102I GCTNAGC 1 cut(s) 435
BpuMI CCSGG 2 cut(s) 498, 499
BsaHI GRCGYC 1 cut(s) 494
BsaJI CCNNGG 3 cut(s) 96, 429, 497
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 342
BseDI CCNNGG 3 cut(s) 96, 429, 497
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 2 cut(s) 247, 342
BseMII CTCAG 2 cut(s) 97, 426
BseXI GCAGC 5 cut(s) 91, 159, 181, 511, 575
BshFI GGCC 2 cut(s) 95, 240
BshNI GGYRCC 2 cut(s) 100, 493
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 2 cut(s) 76, 498
BslI CCNNNNNNNGG 2 cut(s) 247, 342
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 2 cut(s) 95, 240
BsoBI CYCGRG 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 2 cut(s) 31, 374
Bsp1720I GCTNAGC 1 cut(s) 435
BspANI GGCC 2 cut(s) 95, 240
BspCNI CTCAG 2 cut(s) 96, 427
BspLI GGNNCC 3 cut(s) 102, 427, 495
BspMAI CTGCAG 1 cut(s) 529
BspMI ACCTGC 3 cut(s) 112, 121, 518
BspPI GGATC 1 cut(s) 26
BspT107I GGYRCC 2 cut(s) 100, 493
BssECI CCNNGG 3 cut(s) 96, 429, 497
BssMI GATC 2 cut(s) 31, 374
BssNI GRCGYC 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 429
Bst4CI ACNGT 2 cut(s) 49, 608
Bst6I CTCTTC 3 cut(s) 187, 591, 621
BstACI GRCGYC 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 3 cut(s) 83, 378, 435
BstF5I GGATG 1 cut(s) 481
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 2 cut(s) 34, 377
BstMBI GATC 2 cut(s) 31, 374
BstMWI GCNNNNNNNGC 2 cut(s) 169, 563
BstSCI CCNGG 2 cut(s) 496, 497
BstSFI CTRYAG 1 cut(s) 525
BstV1I GCAGC 5 cut(s) 91, 159, 181, 511, 575
BstV2I GAAGAC 2 cut(s) 47, 398
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 2 cut(s) 95, 240
BtsCI GGATG 1 cut(s) 481
BveI ACCTGC 3 cut(s) 112, 121, 518
Cac8I GCNNGC 1 cut(s) 645
CaiI CAGNNNCTG 1 cut(s) 524
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 1 cut(s) 238
Cfr9I CCCGGG 1 cut(s) 497
Csp6I GTAC 1 cut(s) 306
CviAII CATG 2 cut(s) 275, 572
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 3 cut(s) 83, 378, 435
DinI GGCGCC 1 cut(s) 495
DpnI GATC 2 cut(s) 33, 376
DpnII GATC 2 cut(s) 31, 374
Eam1104I CTCTTC 3 cut(s) 187, 591, 621
EarI CTCTTC 3 cut(s) 187, 591, 621
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 645
Eco88I CYCGRG 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 428
EgeI GGCGCC 1 cut(s) 495
EheI GGCGCC 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 2 cut(s) 278, 575
FaiI YATR 6 cut(s) 30, 54, 276, 568, 573, 584
FatI CATG 2 cut(s) 274, 571
Fnu4HI GCNGC 5 cut(s) 80, 170, 173, 525, 564
FokI GGATG 1 cut(s) 488
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 5 cut(s) 80, 170, 173, 525, 564
FspBI CTAG 2 cut(s) 330, 372
GlaI GCGC 1 cut(s) 495
GluI GCNGC 5 cut(s) 80, 170, 173, 525, 564
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 2 cut(s) 95, 240
HapII CCGG 2 cut(s) 76, 498
HhaI GCGC 1 cut(s) 496
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 2 cut(s) 278, 575
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 1 cut(s) 290
HpaII CCGG 2 cut(s) 76, 498
HphI GGTGA 5 cut(s) 230, 236, 474, 542, 587
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 36, 287
Hpy188III TCNNGA 2 cut(s) 85, 372
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 3 cut(s) 82, 206, 229
HpyCH4III ACNGT 2 cut(s) 49, 608
HpyCH4V TGCA 3 cut(s) 175, 527, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 563
HpyF3I CTNAG 3 cut(s) 83, 378, 435
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 2 cut(s) 278, 575
HspAI GCGC 1 cut(s) 494
KasI GGCGCC 1 cut(s) 493
Kzo9I GATC 2 cut(s) 31, 374
LmnI GCTCC 1 cut(s) 431
Lsp1109I GCAGC 5 cut(s) 91, 159, 181, 511, 575
MaeI CTAG 2 cut(s) 330, 372
MalI GATC 2 cut(s) 33, 376
MboI GATC 2 cut(s) 31, 374
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 3 cut(s) 14, 245, 506
Mly113I GGCGCC 1 cut(s) 494
MnlI CCTC 7 cut(s) 85, 91, 484, 547, 592, 613, 622
MseI TTAA 1 cut(s) 366
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 2 cut(s) 76, 498
MspR9I CCNGG 2 cut(s) 498, 499
Mva1269I GAATGC 1 cut(s) 541
MwoI GCNNNNNNNGC 2 cut(s) 169, 563
NarI GGCGCC 1 cut(s) 494
NciI CCSGG 2 cut(s) 498, 499
NdeII GATC 2 cut(s) 31, 374
NlaIII CATG 2 cut(s) 278, 575
NlaIV GGNNCC 3 cut(s) 102, 427, 495
NmeAIII GCCGAG 1 cut(s) 121
PaqCI CACCTGC 3 cut(s) 112, 121, 518
PctI GAATGC 1 cut(s) 541
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 5 cut(s) 81, 171, 174, 526, 565
PluTI GGCGCC 1 cut(s) 497
PspN4I GGNNCC 3 cut(s) 102, 427, 495
PspPI GGNCC 1 cut(s) 238
PstI CTGCAG 1 cut(s) 529
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 5 cut(s) 80, 170, 173, 525, 564
Sau3AI GATC 2 cut(s) 31, 374
Sau96I GGNCC 1 cut(s) 238
ScrFI CCNGG 2 cut(s) 498, 499
SduI GDGCHC 1 cut(s) 428
SfcI CTRYAG 1 cut(s) 525
SfoI GGCGCC 1 cut(s) 495
SmaI CCCGGG 1 cut(s) 499
SpeI ACTAGT 1 cut(s) 329
Sse9I AATT 3 cut(s) 14, 245, 506
SspDI GGCGCC 1 cut(s) 493
SspMI CTAG 2 cut(s) 330, 372
StyD4I CCNGG 2 cut(s) 496, 497
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 49, 608
TaqI TCGA 2 cut(s) 125, 503
TasI AATT 3 cut(s) 14, 245, 506
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseI GCWGC 5 cut(s) 79, 169, 172, 524, 563
TspDTI ATGAA 2 cut(s) 81, 225
TspGWI ACGGA 1 cut(s) 410
TspMI CCCGGG 1 cut(s) 497
XbaI TCTAGA 1 cut(s) 371
XmaI CCCGGG 1 cut(s) 497
XspI CTAG 2 cut(s) 330, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.