Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002654

Physical Location & Seq

Genomic Coordinates Forward (+)

325187 .. 327326

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGTGAGAACGGAGACAACAATATTGAGGTCGTGGCAGCAAATCACGGTGAAAGTATGATGGACAAAGAAGAGGATTTCAGTAGTGAAAGTGAGGAGGAAGAGGAAGAGGATGTTGGGAAGGAAAGCAAACCTGGTAAGCAAAAGAAGGGGTGGTTTTCATCCATGTTCCAGAGTATTGCTGGCAAGGCGAACTTGGAGAGGTCTGACCTGGAACCAGCTTTGAAAGCTCTCAAGGATAGGCTCATGACCAAGAACGTGGCCGAGGAGATAGCCGAGAAGCTTTGTGAATCAGTGGCAGCTAGTCTTGAGGGTAAAAAGCTGGCTTCTTTCACAAGAATATCTTCTACTGTGCAGACTGCAATGGAAGATGCTCTTGTTCGTATTTTAACTCCCAGGCGCTCTATTGATATACTGAGGGATGTGCATGCTGCCAAGGAACAAAGGAAGCCGTATGTCGTCGTTTTTGTTGGTGTCAATGGAGTTGGGAAATCTACCAATTTGGCTAAGGTTGCTTATTGGCTTCAGCAGCATAACGTCAGTGTCATGATGGCTGCCTGCGATACATTTCGATCAGGAGCTGTTGAGCAGCTGCGTACTCATGCACGCAGACTCCAGATCCCTATTTTTGAGAAGGGATACGAGAAAGATCCTGCAGTTGTGGCTAAGGAAGCAATCCAGGAGGCCACACACAATGGTTCTGATGTGGTTCTTGTTGATACGGCTGGTCGTATGCAGGATAATGAGCCATTGATGAGGGCACTGTCCAAGCTTGTCAATCTTAACAACCCAGATCTTGTCTTGTTCGTTGGAGAGGCATTGGTTGGGAATGATGCTGTTGATCAGCTTTCGAAGTTTAATCAGAAATTAGCGGACCTCTCAACTTCGCAAAACCCGAGACTGATAGACGGGATATTGCTCACTAAGTTCGACACTATTGATGATAAGGTTGGGGCTGCGCTGTCCATGGTTTACATATCTGGAGCTCCGGTCATGTTTGTCGGGTGTGGCCAGTCGTACACTGACCTCAAGAAGCTGAATGTGAAATCGATCGTGAAGACGCTCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP-alpha_N SRP54 SRP54_N

Protein Analysis

358

Amino Acids

39.18

Weight (kDa)

5.49

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30600 AT4G30600
fragaria_vesca	FvH4_1g00830 FvH4_2g11040
malus_domestica	MD02G1006600.v1.1 MD15G1151700.v1.1
prunus_persica	Prupe.7G264100_v2.0.a1
pyrus_communis	pycom02g00550 pycom02g00560 pycom15g13570
rosa_chinensis	RchiOBHm_Chr2g0085561 RchiOBHm_Chr7g0224871 RchiOBHm_Chr7g0224891
rosa_laevigata	RLG00000015699
rosa_multiflora	Rmu_co8208878.1_g000001 Rmu_sc0000307.1_g000005 Rmu_sc0013957.1_g000001 Rmu_sc0014614.1_g000004 Rmu_sc0024179.1_g000002 Rmu_ssc0000347.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155270 Rroxscaffold_3G00234310
rosa_rugosa	Rorug01G0461300 Rorug01G0461300 Rorug01G0461300 Rorug02G0380200 Rorug05G0211800 Rorug07G0226700
rosa_samantha	Rh2AG010200 Rh2BG010800 Rh2CG011700 Rh2DG012700 Rh7AG376500 Rh7AG376700 Rh7BG362200 Rh7CG395200 Rh7DG372200 Rh7DG372300
rosa_wichuraiana	Rw2G000910 Rw7G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	872
AclWI	GGATC	2 cut(s)	613, 644
AcoI	YGGCCR	2 cut(s)	261, 1009
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	2 cut(s)	598, 1019
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	4 cut(s)	133, 210, 395, 678
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
Alw21I	GWGCWC	1 cut(s)	988
Alw26I	GTCTC	2 cut(s)	9, 892
AlwI	GGATC	2 cut(s)	613, 644
AlwNI	CAGNNNCTG	1 cut(s)	581
Ama87I	CYCGRG	1 cut(s)	895
AoxI	GGCC	3 cut(s)	261, 684, 1009
ApeKI	GCWGC	8 cut(s)	38, 299, 431, 529, 554, 589, 592, 956
Asp700I	GAANNNNTTC	1 cut(s)	343
AspLEI	GCGC	2 cut(s)	402, 961
AspS9I	GGNCC	1 cut(s)	874
AsuHPI	GGTGA	2 cut(s)	17, 62
AsuII	TTCGAA	1 cut(s)	851
AvaI	CYCGRG	1 cut(s)	895
AvaII	GGWCC	1 cut(s)	874
BaeGI	GKGCMC	1 cut(s)	763
BalI	TGGCCA	1 cut(s)	1011
BanII	GRGCYC	1 cut(s)	988
BbsI	GAAGAC	1 cut(s)	1064
Bbv12I	GWGCWC	1 cut(s)	988
BbvI	GCAGC	8 cut(s)	50, 311, 418, 541, 541, 579, 601, 943
BccI	CCATC	2 cut(s)	55, 544
BceAI	ACGGC	2 cut(s)	436, 738
BciT130I	CCWGG	4 cut(s)	135, 212, 397, 680
BciVI	GTATCC	1 cut(s)	632
BclI	TGATCA	1 cut(s)	841
BcoDI	GTCTC	2 cut(s)	9, 892
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	654
BfoI	RGCGCY	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	632
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	8 cut(s)	39, 300, 432, 530, 555, 590, 593, 957
BlsI	GCNGC	8 cut(s)	40, 301, 433, 531, 556, 591, 594, 958
Bme1390I	CCNGG	4 cut(s)	135, 212, 397, 680
Bme18I	GGWCC	1 cut(s)	874
BmeT110I	CYCGRG	1 cut(s)	895
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	4 cut(s)	135, 212, 397, 680
BmsI	GCATC	2 cut(s)	361, 823
BpiI	GAAGAC	1 cut(s)	1064
BpmI	CTGGAG	2 cut(s)	599, 1002
Bpu10I	CCTNAGC	2 cut(s)	507, 666
Bpu14I	TTCGAA	1 cut(s)	851
BpuEI	CTTGAG	3 cut(s)	218, 329, 1013
Bsa29I	ATCGAT	1 cut(s)	1049
BsaJI	CCNNGG	4 cut(s)	264, 395, 435, 966
BsaWI	WCCGGW	1 cut(s)	988
BsaXI	ACNNNNNCTCC	4 cut(s)	597, 627, 975, 1005
Bse1I	ACTGG	1 cut(s)	1012
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	4 cut(s)	135, 212, 397, 680
BseCI	ATCGAT	1 cut(s)	1049
BseDI	CCNNGG	4 cut(s)	264, 395, 435, 966
BseGI	GGATG	3 cut(s)	118, 161, 427
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	1 cut(s)	1012
BseRI	GAGGAG	2 cut(s)	110, 281
BseSI	GKGCMC	1 cut(s)	763
BseXI	GCAGC	8 cut(s)	50, 311, 418, 541, 541, 579, 601, 943
BsgI	GTGCAG	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	1053
BshFI	GGCC	3 cut(s)	263, 686, 1011
BshVI	ATCGAT	1 cut(s)	1049
BsiEI	CGRYCG	1 cut(s)	1053
BsiHKAI	GWGCWC	1 cut(s)	988
BsiHKCI	CYCGRG	1 cut(s)	895
BsiSI	CCGG	1 cut(s)	989
BsmAI	GTCTC	2 cut(s)	9, 892
BsnI	GGCC	3 cut(s)	263, 686, 1011
BsoBI	CYCGRG	1 cut(s)	895
Bsp119I	TTCGAA	1 cut(s)	851
Bsp1286I	GDGCHC	2 cut(s)	763, 988
Bsp143I	GATC	6 cut(s)	572, 618, 649, 793, 841, 1050
Bsp19I	CCATGG	1 cut(s)	966
BspACI	CCGC	1 cut(s)	872
BspANI	GGCC	3 cut(s)	263, 686, 1011
BspCNI	CTCAG	1 cut(s)	408
BspDI	ATCGAT	1 cut(s)	1049
BspHI	TCATGA	2 cut(s)	246, 546
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	2 cut(s)	613, 644
BspT104I	TTCGAA	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	1012
BssECI	CCNNGG	4 cut(s)	264, 395, 435, 966
BssMI	GATC	6 cut(s)	572, 618, 649, 793, 841, 1050
BssT1I	CCWWGG	2 cut(s)	435, 966
Bst2UI	CCWGG	4 cut(s)	135, 212, 397, 680
Bst4CI	ACNGT	3 cut(s)	50, 352, 765
Bst6I	CTCTTC	3 cut(s)	66, 96, 102
BstBI	TTCGAA	1 cut(s)	851
BstC8I	GCNNGC	5 cut(s)	184, 324, 429, 559, 607
BstDEI	CTNAG	4 cut(s)	416, 507, 666, 924
BstDSI	CCRYGG	1 cut(s)	966
BstF5I	GGATG	3 cut(s)	118, 161, 427
BstH2I	RGCGCY	1 cut(s)	403
BstHHI	GCGC	2 cut(s)	402, 961
BstKTI	GATC	6 cut(s)	575, 621, 652, 796, 844, 1053
BstMAI	GTCTC	2 cut(s)	9, 892
BstMBI	GATC	6 cut(s)	572, 618, 649, 793, 841, 1050
BstMCI	CGRYCG	1 cut(s)	1053
BstMWI	GCNNNNNNNGC	6 cut(s)	188, 227, 512, 529, 662, 671
BstNI	CCWGG	4 cut(s)	135, 212, 397, 680
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	4 cut(s)	133, 210, 395, 678
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	763
BstV1I	GCAGC	8 cut(s)	50, 311, 418, 541, 541, 579, 601, 943
BstV2I	GAAGAC	1 cut(s)	1064
BstX2I	RGATCY	3 cut(s)	618, 649, 793
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	3 cut(s)	618, 649, 793
Bsu15I	ATCGAT	1 cut(s)	1049
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	3 cut(s)	263, 686, 1011
BsuTUI	ATCGAT	1 cut(s)	1049
BtgI	CCRYGG	1 cut(s)	966
BtsCI	GGATG	3 cut(s)	118, 161, 427
BtsIMutI	CAGTG	4 cut(s)	300, 547, 761, 1020
Cac8I	GCNNGC	5 cut(s)	184, 324, 429, 559, 607
CaiI	CAGNNNCTG	1 cut(s)	581
CciI	TCATGA	2 cut(s)	246, 546
CfoI	GCGC	2 cut(s)	402, 961
Cfr13I	GGNCC	1 cut(s)	874
ClaI	ATCGAT	1 cut(s)	1049
CseI	GACGC	1 cut(s)	1069
CsiI	ACCWGGT	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	597, 1018
CviAII	CATG	7 cut(s)	166, 247, 428, 547, 602, 967, 994
CviQI	GTAC	2 cut(s)	597, 1018
DdeI	CTNAG	4 cut(s)	416, 507, 666, 924
DpnI	GATC	6 cut(s)	574, 620, 651, 795, 843, 1052
DpnII	GATC	6 cut(s)	572, 618, 649, 793, 841, 1050
EaeI	YGGCCR	2 cut(s)	261, 1009
Eam1104I	CTCTTC	3 cut(s)	66, 96, 102
EarI	CTCTTC	3 cut(s)	66, 96, 102
Ecl136II	GAGCTC	1 cut(s)	986
Eco130I	CCWWGG	2 cut(s)	435, 966
Eco24I	GRGCYC	1 cut(s)	988
Eco47I	GGWCC	1 cut(s)	874
Eco53kI	GAGCTC	1 cut(s)	986
Eco57I	CTGAAG	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	895
EcoICRI	GAGCTC	1 cut(s)	986
EcoRII	CCWGG	4 cut(s)	133, 210, 395, 678
EcoT14I	CCWWGG	2 cut(s)	435, 966
EcoT38I	GRGCYC	1 cut(s)	988
ErhI	CCWWGG	2 cut(s)	435, 966
FaeI	CATG	7 cut(s)	169, 250, 431, 550, 605, 970, 997
FalI	AAGNNNNNCTT	6 cut(s)	179, 211, 328, 360, 360, 392
FatI	CATG	7 cut(s)	165, 246, 427, 546, 601, 966, 993
FbaI	TGATCA	1 cut(s)	841
Fnu4HI	GCNGC	8 cut(s)	39, 300, 432, 530, 555, 590, 593, 957
FokI	GGATG	3 cut(s)	125, 148, 434
FriOI	GRGCYC	1 cut(s)	988
Fsp4HI	GCNGC	8 cut(s)	39, 300, 432, 530, 555, 590, 593, 957
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	2 cut(s)	401, 960
GluI	GCNGC	8 cut(s)	39, 300, 432, 530, 555, 590, 593, 957
GsuI	CTGGAG	2 cut(s)	599, 1002
HaeII	RGCGCY	1 cut(s)	403
HaeIII	GGCC	3 cut(s)	263, 686, 1011
HapII	CCGG	1 cut(s)	989
HgaI	GACGC	1 cut(s)	1069
HhaI	GCGC	2 cut(s)	402, 961
Hin1II	CATG	7 cut(s)	169, 250, 431, 550, 605, 970, 997
Hin6I	GCGC	2 cut(s)	400, 959
HinP1I	GCGC	2 cut(s)	400, 959
HindIII	AAGCTT	2 cut(s)	281, 770
HinfI	GANTC	2 cut(s)	290, 612
HpaII	CCGG	1 cut(s)	989
HphI	GGTGA	2 cut(s)	17, 62
Hpy166II	GTNNAC	2 cut(s)	973, 1020
Hpy188I	TCNGA	3 cut(s)	208, 703, 864
Hpy8I	GTNNAC	2 cut(s)	973, 1020
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	3 cut(s)	115, 142, 628
HpyCH4III	ACNGT	3 cut(s)	50, 352, 765
HpyCH4IV	ACGT	2 cut(s)	258, 537
HpyCH4V	TGCA	6 cut(s)	355, 362, 427, 605, 656, 736
HpyF10VI	GCNNNNNNNGC	6 cut(s)	188, 227, 512, 529, 662, 671
HpyF3I	CTNAG	4 cut(s)	416, 507, 666, 924
HpySE526I	ACGT	2 cut(s)	258, 537
Hsp92II	CATG	7 cut(s)	169, 250, 431, 550, 605, 970, 997
HspAI	GCGC	2 cut(s)	400, 959
Ksp22I	TGATCA	1 cut(s)	841
Kzo9I	GATC	6 cut(s)	572, 618, 649, 793, 841, 1050
LmnI	GCTCC	4 cut(s)	578, 983, 991, 1068
Lsp1109I	GCAGC	8 cut(s)	50, 311, 418, 541, 541, 579, 601, 943
LweI	GCATC	2 cut(s)	361, 823
MabI	ACCWGGT	1 cut(s)	133
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	2 cut(s)	258, 537
MalI	GATC	6 cut(s)	574, 620, 651, 795, 843, 1052
MboI	GATC	6 cut(s)	572, 618, 649, 793, 841, 1050
MboII	GAAGA	6 cut(s)	83, 113, 119, 336, 380, 1069
MflI	RGATCY	3 cut(s)	618, 649, 793
MhlI	GDGCHC	2 cut(s)	763, 988
MlsI	TGGCCA	1 cut(s)	1011
MluCI	AATT	2 cut(s)	499, 866
MluNI	TGGCCA	1 cut(s)	1011
MlyI	GAGTC	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	790
Mox20I	TGGCCA	1 cut(s)	1011
MroXI	GAANNNNTTC	1 cut(s)	343
MscI	TGGCCA	1 cut(s)	1011
MseI	TTAA	3 cut(s)	389, 783, 858
Msp20I	TGGCCA	1 cut(s)	1011
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	1 cut(s)	989
MspR9I	CCNGG	4 cut(s)	135, 212, 397, 680
MvaI	CCWGG	4 cut(s)	135, 212, 397, 680
MwoI	GCNNNNNNNGC	6 cut(s)	188, 227, 512, 529, 662, 671
NcoI	CCATGG	1 cut(s)	966
NdeII	GATC	6 cut(s)	572, 618, 649, 793, 841, 1050
NlaIII	CATG	7 cut(s)	169, 250, 431, 550, 605, 970, 997
NlaIV	GGNNCC	1 cut(s)	216
NmeAIII	GCCGAG	2 cut(s)	289, 301
NspI	RCATGY	1 cut(s)	431
NspV	TTCGAA	1 cut(s)	851
PaeI	GCATGC	1 cut(s)	431
PagI	TCATGA	2 cut(s)	246, 546
PcsI	WCGNNNNNNNCGW	1 cut(s)	893
PdmI	GAANNNNTTC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	8 cut(s)	40, 301, 433, 531, 556, 591, 594, 958
Ple19I	CGATCG	1 cut(s)	1053
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	988
Psp6I	CCWGG	4 cut(s)	133, 210, 395, 678
PspGI	CCWGG	4 cut(s)	133, 210, 395, 678
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	874
PstI	CTGCAG	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	3 cut(s)	618, 649, 793
PvuI	CGATCG	1 cut(s)	1053
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	2 cut(s)	598, 1019
RsaNI	GTAC	2 cut(s)	597, 1018
SacI	GAGCTC	1 cut(s)	988
SaqAI	TTAA	3 cut(s)	389, 783, 858
SatI	GCNGC	8 cut(s)	39, 300, 432, 530, 555, 590, 593, 957
Sau3AI	GATC	6 cut(s)	572, 618, 649, 793, 841, 1050
Sau96I	GGNCC	1 cut(s)	874
SchI	GAGTC	1 cut(s)	606
ScrFI	CCNGG	4 cut(s)	135, 212, 397, 680
SduI	GDGCHC	2 cut(s)	763, 988
SexAI	ACCWGGT	1 cut(s)	133
SfaNI	GCATC	2 cut(s)	361, 823
SfcI	CTRYAG	1 cut(s)	654
SfuI	TTCGAA	1 cut(s)	851
SinI	GGWCC	1 cut(s)	874
SmlI	CTYRAG	3 cut(s)	233, 308, 1028
SmoI	CTYRAG	3 cut(s)	233, 308, 1028
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	2 cut(s)	499, 866
SsiI	CCGC	1 cut(s)	872
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	988
StyD4I	CCNGG	4 cut(s)	133, 210, 395, 678
StyI	CCWWGG	2 cut(s)	435, 966
TaaI	ACNGT	3 cut(s)	50, 352, 765
TaiI	ACGT	2 cut(s)	261, 540
TaqI	TCGA	4 cut(s)	571, 851, 930, 1049
TasI	AATT	2 cut(s)	499, 866
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	389, 783, 858
Tru9I	TTAA	3 cut(s)	389, 783, 858
TscAI	CASTG	4 cut(s)	300, 547, 768, 1027
TseI	GCWGC	8 cut(s)	38, 299, 431, 529, 554, 589, 592, 956
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	4 cut(s)	300, 547, 768, 1027
VpaK11BI	GGWCC	1 cut(s)	874
XceI	RCATGY	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	343
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.