Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002654

Physical Location & Seq

Genomic Coordinates Reverse (-)

38468698 .. 38470738

Gene Structure 2041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG362200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGTTAGAACAGTTACTGATATTTACGAGAGGAGGATTAATCCTGTGGACTTGTAAAGAGCTTGGAAATGCTCTTAAAGGATCCCCCATCGACACATTGATCCGTTCCTGTCTTCTCGAGGAACGATCCGGTGCGGCATTCTATGATTACACTGCTCCAGGGGCTGCTTACACCCTCAAATGGACTTTCCATAATGAGCTTGGCCTCGTCTTCGTTGCTGTTTATCAGAAGATCCTCCATCTCTTGTACGTCGATGAGCTGCTTTCGATGGTCAAGCACCAATTCTCGCAGGTTTATGATCCGAAGAAGACGACTGTGTATAATGGTTTTGATGAAACTTTCCGGCAGCTCAGGGAGGAGGCCGAGGCTCGTGCTGAGGGGTTGAGGAAGTCGAAGAAGCAGGTGGGGAAGCCTGTGAGTAATGGTAGGAAGCAAGGGCAGCTGCAAAAGGGTGGACTTGGAGGAGAGAAGAAGAATAATGAAGGTGGTGATGGTGATAGTGTGAAGGGCGGTAAATTGGAGAATGGAATCTACAATGGTGGTCATGTTGTTGTCAGAGAATCTAATGTAGGTGGTACTGCTAACAGAAAAGAGAATGCTAGTTCCAATCTTGGGGCTTTTGATGTAAATAAGCTTAAATCTAGATCTAAGGTTGGGAAGAAGACGGAAAAAACAACTACCCTTGATAGCAAGGGCTCCAAGGCTGAGCTGAAAAAGAAGAAAACCAAGAAAAATAGAGTTTGGGATGTTTCACCAAAAGAGGCACCCGAGTCTAAATTGGATTTTACGGGTGCTGTGGGTGAGAATGCAGAGAACAATGTTGAGGTTGTGGCAGCAGATCATGGTGAAAGTATGATGGATAGGGAAGAGGATTACAGTAGTGAAAGTGAGGCTGAAGAGGAAGAGGAAGCTGGAAAGGAAAGCAAGCCTGATTCAAAAAAGAAGAGTTGGTTTTCATCTATGTTCCAGAGTATTGCAGGCAAGGGAAACTTGGAGAGGTCAGATCTGGAACCAGCTTTAAAAGCTCTGAAGGATAGGCTCATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAGCTTTGTGAATCAGTGGCAGCTAGTCTCGAGGGTAAAAAGTTGGGTTCATTTACAAGAATATCTTCTACTGTTCAGGTTGGAGCTGCACTGTCCATGGTTTACATATCTGGAGCCCCAGTCATGTTTGTTGGGTGTGGGCAGTCTTATACAGACCTCAAAAAGTTGAATGTGAAATCAATTGTGAAGACTCTCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP-alpha_N SRP54 SRP54_N

Protein Analysis

425

Amino Acids

46.56

Weight (kDa)

8.95

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP-alpha_N	PF04086	28 - 299	7.6e-60	Signal recognition particle, alpha subunit, N-terminal
SRP54_N	PF02881	318 - 383	3.3e-09	SRP54-type protein, helical bundle domain
SRP54	PF00448	376 - 424	1.2e-07	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30600 AT4G30600
fragaria_vesca	FvH4_1g00830 FvH4_2g11040
malus_domestica	MD02G1006600.v1.1 MD15G1151700.v1.1
prunus_persica	Prupe.7G264100_v2.0.a1
pyrus_communis	pycom02g00550 pycom02g00560 pycom15g13570
rosa_chinensis	RchiOBHm_Chr2g0085561 RchiOBHm_Chr7g0224871 RchiOBHm_Chr7g0224891
rosa_laevigata	RLG00000015699
rosa_multiflora	Rmu_co8208878.1_g000001 Rmu_sc0000307.1_g000005 Rmu_sc0013957.1_g000001 Rmu_sc0014614.1_g000004 Rmu_sc0024179.1_g000002 Rmu_ssc0000347.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155270 Rroxscaffold_3G00234310
rosa_rugosa	Rorug01G0461300 Rorug01G0461300 Rorug01G0461300 Rorug02G0380200 Rorug05G0211800 Rorug07G0226700
rosa_samantha	Rh2AG010200 Rh2BG010800 Rh2CG011700 Rh2DG012700 Rh7AG376500 Rh7AG376700 Rh7BG362200 Rh7CG395200 Rh7DG372200 Rh7DG372300
rosa_wichuraiana	Rw2G000910 Rw7G031400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
Acc36I	ACCTGC	2 cut(s)	280, 391
AccB1I	GGYRCC	1 cut(s)	763
AciI	CCGC	2 cut(s)	134, 510
AclWI	GGATC	6 cut(s)	75, 88, 94, 120, 226, 293
AcuI	CTGAAG	2 cut(s)	915, 1049
AfaI	GTAC	2 cut(s)	248, 577
AfiI	CCNNNNNNNGG	2 cut(s)	180, 612
AgsI	TTSAA	2 cut(s)	936, 1243
AjnI	CCWGG	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	1106
AlwI	GGATC	6 cut(s)	75, 88, 94, 120, 226, 293
AlwNI	CAGNNNCTG	2 cut(s)	16, 164
Ama87I	CYCGRG	3 cut(s)	116, 767, 1103
AoxI	GGCC	2 cut(s)	202, 360
ApeKI	GCWGC	8 cut(s)	164, 259, 346, 439, 442, 833, 1094, 1160
AseI	ATTAAT	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	1138
AsuHPI	GGTGA	5 cut(s)	500, 506, 744, 812, 857
AvaI	CYCGRG	3 cut(s)	116, 767, 1103
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	763
BanII	GRGCYC	2 cut(s)	698, 1192
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	5 cut(s)	104, 202, 314, 668, 1268
BbvCI	CCTCAGC	2 cut(s)	375, 1059
BbvI	GCAGC	8 cut(s)	151, 246, 358, 429, 451, 845, 1106, 1147
BccI	CCATC	5 cut(s)	95, 246, 262, 485, 850
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	1106
BfaI	CTAG	3 cut(s)	600, 642, 1098
BfuAI	ACCTGC	2 cut(s)	280, 391
BglII	AGATCT	2 cut(s)	644, 1003
BisI	GCNGC	9 cut(s)	135, 165, 260, 347, 440, 443, 834, 1095, 1161
BlpI	GCTNAGC	1 cut(s)	705
BlsI	GCNGC	9 cut(s)	136, 166, 261, 348, 441, 444, 835, 1096, 1162
Bme1390I	CCNGG	1 cut(s)	159
BmeT110I	CYCGRG	3 cut(s)	116, 767, 1103
BmiI	GGNNCC	5 cut(s)	82, 697, 765, 1011, 1189
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	1187
BmuI	ACTGGG	1 cut(s)	1187
BpiI	GAAGAC	5 cut(s)	104, 202, 314, 668, 1268
BpmI	CTGGAG	2 cut(s)	141, 1206
Bpu10I	CCTNAGC	3 cut(s)	350, 375, 1059
Bpu1102I	GCTNAGC	1 cut(s)	705
BsaJI	CCNNGG	4 cut(s)	158, 363, 699, 1170
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	1179, 1209
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 612
Bse1I	ACTGG	1 cut(s)	1193
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	4 cut(s)	158, 363, 699, 1170
BseGI	GGATG	1 cut(s)	751
BseLI	CCNNNNNNNGG	2 cut(s)	180, 612
BseMII	CTCAG	5 cut(s)	364, 366, 696, 1050, 1062
BseNI	ACTGG	1 cut(s)	1193
BseRI	GAGGAG	4 cut(s)	45, 371, 477, 1076
BseXI	GCAGC	8 cut(s)	151, 246, 358, 429, 451, 845, 1106, 1147
BsgI	GTGCAG	1 cut(s)	1146
BshFI	GGCC	2 cut(s)	204, 362
BshNI	GGYRCC	1 cut(s)	763
BsiHKCI	CYCGRG	3 cut(s)	116, 767, 1103
BsiSI	CCGG	2 cut(s)	129, 343
BslI	CCNNNNNNNGG	2 cut(s)	180, 612
BsmAI	GTCTC	1 cut(s)	1106
BsmI	GAATGC	3 cut(s)	137, 601, 811
BsnI	GGCC	2 cut(s)	204, 362
BsoBI	CYCGRG	3 cut(s)	116, 767, 1103
Bsp1286I	GDGCHC	2 cut(s)	698, 1192
Bsp143I	GATC	8 cut(s)	80, 99, 125, 231, 298, 644, 838, 1003
Bsp1720I	GCTNAGC	1 cut(s)	705
Bsp19I	CCATGG	1 cut(s)	1170
BspACI	CCGC	2 cut(s)	134, 510
BspANI	GGCC	2 cut(s)	204, 362
BspCNI	CTCAG	5 cut(s)	363, 367, 697, 1051, 1063
BspHI	TCATGA	1 cut(s)	1041
BspLI	GGNNCC	5 cut(s)	82, 697, 765, 1011, 1189
BspMI	ACCTGC	2 cut(s)	280, 391
BspPI	GGATC	6 cut(s)	75, 88, 94, 120, 226, 293
BspT107I	GGYRCC	1 cut(s)	763
BsrI	ACTGG	1 cut(s)	1193
BssECI	CCNNGG	4 cut(s)	158, 363, 699, 1170
BssMI	GATC	8 cut(s)	80, 99, 125, 231, 298, 644, 838, 1003
BssSI	CACGAG	1 cut(s)	369
BssT1I	CCWWGG	2 cut(s)	699, 1170
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	5 cut(s)	12, 316, 878, 1147, 1167
Bst6I	CTCTTC	4 cut(s)	861, 891, 897, 938
BstC8I	GCNNGC	2 cut(s)	926, 979
BstDEI	CTNAG	6 cut(s)	350, 375, 648, 705, 1059, 1071
BstDSI	CCRYGG	1 cut(s)	1170
BstF5I	GGATG	1 cut(s)	751
BstKTI	GATC	8 cut(s)	83, 102, 128, 234, 301, 647, 841, 1006
BstMAI	GTCTC	1 cut(s)	1106
BstMBI	GATC	8 cut(s)	80, 99, 125, 231, 298, 644, 838, 1003
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 439, 1022
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	8 cut(s)	151, 246, 358, 429, 451, 845, 1106, 1147
BstV2I	GAAGAC	5 cut(s)	104, 202, 314, 668, 1268
BstX2I	RGATCY	4 cut(s)	80, 231, 644, 1003
BstXI	CCANNNNNNTGG	1 cut(s)	1054
BstYI	RGATCY	4 cut(s)	80, 231, 644, 1003
BsuRI	GGCC	2 cut(s)	204, 362
BtgI	CCRYGG	1 cut(s)	1170
BtsCI	GGATG	1 cut(s)	751
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	3 cut(s)	150, 1095, 1163
BveI	ACCTGC	2 cut(s)	280, 391
Cac8I	GCNNGC	2 cut(s)	926, 979
CaiI	CAGNNNCTG	2 cut(s)	16, 164
CciI	TCATGA	1 cut(s)	1041
Csp6I	GTAC	2 cut(s)	247, 576
CviAII	CATG	5 cut(s)	545, 842, 1042, 1171, 1198
CviQI	GTAC	2 cut(s)	247, 576
DdeI	CTNAG	6 cut(s)	350, 375, 648, 705, 1059, 1071
DpnI	GATC	8 cut(s)	82, 101, 127, 233, 300, 646, 840, 1005
DpnII	GATC	8 cut(s)	80, 99, 125, 231, 298, 644, 838, 1003
DraI	TTTAAA	1 cut(s)	1020
Eam1104I	CTCTTC	4 cut(s)	861, 891, 897, 938
EarI	CTCTTC	4 cut(s)	861, 891, 897, 938
Eco130I	CCWWGG	2 cut(s)	699, 1170
Eco24I	GRGCYC	2 cut(s)	698, 1192
Eco57I	CTGAAG	2 cut(s)	915, 1049
Eco88I	CYCGRG	3 cut(s)	116, 767, 1103
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	2 cut(s)	699, 1170
EcoT38I	GRGCYC	2 cut(s)	698, 1192
ErhI	CCWWGG	2 cut(s)	699, 1170
FaeI	CATG	5 cut(s)	548, 845, 1045, 1174, 1201
FalI	AAGNNNNNCTT	4 cut(s)	974, 1006, 1123, 1155
FatI	CATG	5 cut(s)	544, 841, 1041, 1170, 1197
Fnu4HI	GCNGC	9 cut(s)	135, 165, 260, 347, 440, 443, 834, 1095, 1161
FokI	GGATG	1 cut(s)	758
FriOI	GRGCYC	2 cut(s)	698, 1192
Fsp4HI	GCNGC	9 cut(s)	135, 165, 260, 347, 440, 443, 834, 1095, 1161
FspBI	CTAG	3 cut(s)	600, 642, 1098
GluI	GCNGC	9 cut(s)	135, 165, 260, 347, 440, 443, 834, 1095, 1161
GsuI	CTGGAG	2 cut(s)	141, 1206
HaeIII	GGCC	2 cut(s)	204, 362
HapII	CCGG	2 cut(s)	129, 343
Hin1II	CATG	5 cut(s)	548, 845, 1045, 1174, 1201
HindIII	AAGCTT	2 cut(s)	632, 1076
HinfI	GANTC	6 cut(s)	528, 560, 770, 932, 1085, 1264
HpaII	CCGG	2 cut(s)	129, 343
HphI	GGTGA	5 cut(s)	500, 506, 744, 812, 857
Hpy166II	GTNNAC	3 cut(s)	48, 455, 1177
Hpy188I	TCNGA	5 cut(s)	228, 303, 557, 1003, 1029
Hpy188III	TCNNGA	8 cut(s)	116, 642, 967, 1007, 1042, 1103, 1185, 1270
Hpy8I	GTNNAC	3 cut(s)	48, 455, 1177
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	476, 499, 1024
HpyCH4III	ACNGT	5 cut(s)	12, 316, 878, 1147, 1167
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	445, 809, 977, 1163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 439, 1022
HpyF3I	CTNAG	6 cut(s)	350, 375, 648, 705, 1059, 1071
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	5 cut(s)	548, 845, 1045, 1174, 1201
Kzo9I	GATC	8 cut(s)	80, 99, 125, 231, 298, 644, 838, 1003
LmnI	GCTCC	4 cut(s)	160, 701, 1157, 1187
Lsp1109I	GCAGC	8 cut(s)	151, 246, 358, 429, 451, 845, 1106, 1147
MaeI	CTAG	3 cut(s)	600, 642, 1098
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	8 cut(s)	82, 101, 127, 233, 300, 646, 840, 1005
MboI	GATC	8 cut(s)	80, 99, 125, 231, 298, 644, 838, 1003
MfeI	CAATTG	1 cut(s)	1254
MflI	RGATCY	4 cut(s)	80, 231, 644, 1003
MhlI	GDGCHC	2 cut(s)	698, 1192
MluCI	AATT	4 cut(s)	281, 515, 776, 1254
MlyI	GAGTC	2 cut(s)	779, 1258
MmeI	TCCRAC	1 cut(s)	1135
MroXI	GAANNNNTTC	1 cut(s)	1138
MseI	TTAA	4 cut(s)	38, 75, 636, 1019
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	2 cut(s)	129, 343
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	1254
Mva1269I	GAATGC	3 cut(s)	137, 601, 811
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	161, 439, 1022
NcoI	CCATGG	1 cut(s)	1170
NdeII	GATC	8 cut(s)	80, 99, 125, 231, 298, 644, 838, 1003
NlaIII	CATG	5 cut(s)	548, 845, 1045, 1174, 1201
NlaIV	GGNNCC	5 cut(s)	82, 697, 765, 1011, 1189
NmeAIII	GCCGAG	1 cut(s)	388
PaeR7I	CTCGAG	2 cut(s)	116, 1103
PagI	TCATGA	1 cut(s)	1041
PaqCI	CACCTGC	1 cut(s)	391
PctI	GAATGC	3 cut(s)	137, 601, 811
PdmI	GAANNNNTTC	1 cut(s)	1138
PfeI	GAWTC	4 cut(s)	528, 560, 932, 1085
PkrI	GCNGC	9 cut(s)	136, 166, 261, 348, 441, 444, 835, 1096, 1162
PleI	GAGTC	2 cut(s)	778, 1258
PpsI	GAGTC	2 cut(s)	778, 1258
PshBI	ATTAAT	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	5 cut(s)	82, 697, 765, 1011, 1189
PstNI	CAGNNNCTG	2 cut(s)	16, 164
PsuI	RGATCY	4 cut(s)	80, 231, 644, 1003
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	2 cut(s)	248, 577
RsaNI	GTAC	2 cut(s)	247, 576
SaqAI	TTAA	4 cut(s)	38, 75, 636, 1019
SatI	GCNGC	9 cut(s)	135, 165, 260, 347, 440, 443, 834, 1095, 1161
Sau3AI	GATC	8 cut(s)	80, 99, 125, 231, 298, 644, 838, 1003
SchI	GAGTC	2 cut(s)	779, 1258
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	698, 1192
Sfr274I	CTCGAG	2 cut(s)	116, 1103
SlaI	CTCGAG	2 cut(s)	116, 1103
SmlI	CTYRAG	2 cut(s)	116, 1103
SmoI	CTYRAG	2 cut(s)	116, 1103
Sse9I	AATT	4 cut(s)	281, 515, 776, 1254
SsiI	CCGC	2 cut(s)	134, 510
SspMI	CTAG	3 cut(s)	600, 642, 1098
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	699, 1170
TaaI	ACNGT	5 cut(s)	12, 316, 878, 1147, 1167
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	6 cut(s)	90, 117, 252, 266, 392, 1104
TasI	AATT	4 cut(s)	281, 515, 776, 1254
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	4 cut(s)	528, 560, 932, 1085
Tru1I	TTAA	4 cut(s)	38, 75, 636, 1019
Tru9I	TTAA	4 cut(s)	38, 75, 636, 1019
TscAI	CASTG	3 cut(s)	157, 1095, 1170
TseI	GCWGC	8 cut(s)	164, 259, 346, 439, 442, 833, 1094, 1160
TspDTI	ATGAA	4 cut(s)	348, 495, 945, 1113
TspGWI	ACGGA	2 cut(s)	92, 680
TspRI	CASTG	3 cut(s)	157, 1095, 1170
VspI	ATTAAT	1 cut(s)	38
XbaI	TCTAGA	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XhoI	CTCGAG	2 cut(s)	116, 1103
XmnI	GAANNNNTTC	1 cut(s)	1138
XspI	CTAG	3 cut(s)	600, 642, 1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.