pycom04g03170

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0003287
Physical Location & Seq
Forward (+)
2918673 .. 2919382
710 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
ATGAACTCTCACCATAGCCAACAAGATGAGGATTCATGGGGAAAAGATGGAAGACGTGGTGGTCATCAAAAAGATCCATTGAAGAGTCTAATCGATCTTGACATCTTGTCCATCGACGAACTACAAAGTAGCTTGTTGGTCCAACAAGGCGGGAGAGGTAGACGCAACAGTTTCAGAGGAAGAGGACGAGGGAGGGGTAGAAATGGACCTGACAAGTTTACCCTTGAATGTTACAATTGTCATGAACTTGGGCATTTTCAGTGGGAATGCCCTAAGAAGGGGAATGATTCAAAAGGTTTCTTTGCAGAAACAAGTGAAGAAATGTTGTTGATGGCTTATGTGGATATCGAGGAGCACATGTGTGGTAAGAAGGAGATGTTCACAGACTTGGATGAAACCTTCAGGAAATCTATGAAGTTAGGGAACAATTCAAGCTTGGTTGTGCTAGGGAAGGGACATGTTCGTATGGAAGTCAATGGAATCATGCAGGTCATCACTGGGGTATTCTATGTGTCGGATTTAAAGAATAATTTACTGAGCATTAGACAATTGCAAGAGAATGGCCTTGCCATTTTTATAAAATGTTGGACAAATGGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

201

Amino Acids

22.71

Weight (kDa)

7.05

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 118 - 188 4e-19 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
AasI GACNNNNNNGTC 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 160
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 385
AfiI CCNNNNNNNGG 2 cut(s) 277, 278
AflIII ACRYGT 2 cut(s) 357, 457
AgsI TTSAA 4 cut(s) 82, 227, 291, 432
AhdI GACNNNNNGTC 2 cut(s) 106, 594
AjiI CACGTC 1 cut(s) 56
AleI CACNNNNGTG 1 cut(s) 360
AluBI AGCT 2 cut(s) 132, 435
AluI AGCT 2 cut(s) 132, 435
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 562
AspS9I GGNCC 2 cut(s) 139, 206
AvaII GGWCC 2 cut(s) 139, 206
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 357
BccI CCATC 3 cut(s) 41, 119, 325
BfaI CTAG 1 cut(s) 446
BfuAI ACCTGC 1 cut(s) 478
Bme18I GGWCC 2 cut(s) 139, 206
BmeRI GACNNNNNGTC 2 cut(s) 106, 594
BmgBI CACGTC 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 139, 206
BmrI ACTGGG 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 58
Bsa29I ATCGAT 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 278
Bse1I ACTGG 1 cut(s) 502
BseCI ATCGAT 1 cut(s) 93
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 2 cut(s) 277, 278
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 1 cut(s) 365
BshFI GGCC 1 cut(s) 564
BshVI ATCGAT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 357
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 2 cut(s) 277, 278
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 2 cut(s) 73, 94
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 564
BspCNI CTCAG 1 cut(s) 528
BspDI ATCGAT 1 cut(s) 93
BspHI TCATGA 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 1 cut(s) 68
BsrI ACTGG 1 cut(s) 502
BssMI GATC 2 cut(s) 73, 94
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 2 cut(s) 77, 175
BstDEI CTNAG 2 cut(s) 273, 536
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 2 cut(s) 76, 97
BstMBI GATC 2 cut(s) 73, 94
BstNSI RCATGY 2 cut(s) 361, 461
BstV2I GAAGAC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 1 cut(s) 564
BsuTUI ATCGAT 1 cut(s) 93
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 266, 495
BveI ACCTGC 1 cut(s) 478
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 139, 206
ClaI ATCGAT 1 cut(s) 93
CseI GACGC 1 cut(s) 171
CviAII CATG 5 cut(s) 36, 242, 358, 458, 484
CviJI RGCY 5 cut(s) 18, 132, 335, 435, 564
CviKI_1 RGCY 5 cut(s) 18, 132, 335, 435, 564
DdeI CTNAG 2 cut(s) 273, 536
DpnI GATC 2 cut(s) 75, 96
DpnII GATC 2 cut(s) 73, 94
DraI TTTAAA 1 cut(s) 522
DrdI GACNNNNNNGTC 1 cut(s) 60
DriI GACNNNNNGTC 2 cut(s) 106, 594
DseDI GACNNNNNNGTC 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 77, 175
Eam1105I GACNNNNNGTC 2 cut(s) 106, 594
EarI CTCTTC 2 cut(s) 77, 175
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 139, 206
Eco57I CTGAAG 1 cut(s) 385
EcoRV GATATC 1 cut(s) 346
FaeI CATG 5 cut(s) 39, 245, 361, 461, 487
FaqI GGGAC 1 cut(s) 468
FatI CATG 5 cut(s) 35, 241, 357, 457, 483
FauI CCCGC 1 cut(s) 143
FblI GTMKAC 1 cut(s) 160
FokI GGATG 1 cut(s) 404
FspBI CTAG 1 cut(s) 446
HaeIII GGCC 1 cut(s) 564
HgaI GACGC 1 cut(s) 171
Hin1II CATG 5 cut(s) 39, 245, 361, 461, 487
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 4 cut(s) 32, 85, 287, 480
Hpy166II GTNNAC 3 cut(s) 161, 219, 381
Hpy188I TCNGA 2 cut(s) 176, 517
Hpy188III TCNNGA 3 cut(s) 98, 242, 403
Hpy8I GTNNAC 3 cut(s) 161, 219, 381
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 4 cut(s) 271, 364, 409, 445
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 305, 487, 553
HpyF3I CTNAG 2 cut(s) 273, 536
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 5 cut(s) 39, 245, 361, 461, 487
Kzo9I GATC 2 cut(s) 73, 94
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 4 cut(s) 222, 388, 473, 483
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 75, 96
MboI GATC 2 cut(s) 73, 94
MboII GAAGA 4 cut(s) 63, 94, 192, 329
MfeI CAATTG 2 cut(s) 235, 548
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 4 cut(s) 235, 427, 529, 548
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 3 cut(s) 166, 495, 566
MnlI CCTC 7 cut(s) 22, 149, 170, 176, 182, 186, 343
MseI TTAA 1 cut(s) 521
MslI CAYNNNNRTG 1 cut(s) 360
MunI CAATTG 2 cut(s) 235, 548
Mva1269I GAATGC 1 cut(s) 272
NdeII GATC 2 cut(s) 73, 94
NlaIII CATG 5 cut(s) 39, 245, 361, 461, 487
NspI RCATGY 2 cut(s) 361, 461
OliI CACNNNNGTG 1 cut(s) 360
PagI TCATGA 1 cut(s) 241
PciI ACATGT 2 cut(s) 357, 457
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 3 cut(s) 32, 287, 480
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PscI ACATGT 2 cut(s) 357, 457
PsiI TTATAA 1 cut(s) 578
PspPI GGNCC 2 cut(s) 139, 206
PsuI RGATCY 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 1 cut(s) 521
Sau3AI GATC 2 cut(s) 73, 94
Sau96I GGNCC 2 cut(s) 139, 206
SchI GAGTC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 357
SetI ASST 8 cut(s) 58, 134, 160, 211, 298, 401, 437, 492
SinI GGWCC 2 cut(s) 139, 206
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 4 cut(s) 235, 427, 529, 548
SsiI CCGC 1 cut(s) 150
SspMI CTAG 1 cut(s) 446
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 58
TaqI TCGA 3 cut(s) 93, 114, 348
TasI AATT 4 cut(s) 235, 427, 529, 548
TfiI GAWTC 3 cut(s) 32, 287, 480
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 2 cut(s) 266, 502
TspDTI ATGAA 5 cut(s) 17, 24, 258, 408, 428
TspRI CASTG 2 cut(s) 266, 502
VpaK11BI GGWCC 2 cut(s) 139, 206
XceI RCATGY 2 cut(s) 361, 461
XmiI GTMKAC 1 cut(s) 160
XspI CTAG 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.