Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003895

Physical Location & Seq

Genomic Coordinates Forward (+)

5015489 .. 5016307

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAGAAAGAACTTAATGATCGATCTGCAGCCTATGCAGGTGAGAGTTGCGGACTTAATTGATGACGCTGTACCCCTTTCGCCAACTCCATCAGAAGACAAATCATGGGGGTTAAACGAGGAAGATGCTTCTGATAGCTTGACATTTGAGGGGGATGTGGATGCAGCAAAGCATGACAGTGAGCTCCACCAGTCAGAGCATACAGAAGAAAATGAAGAAGTTTCACACCGTGGCTTTGATACAGAGAATGGTTTTGCAATGAAATCACAAGACGTTGAGGGATCTACCTCTTCCGTAACAACAAAGGATGAACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006996 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009643 GO:0009657 GO:0009658 GO:0009893 GO:0009987 GO:0010109 GO:0015075 GO:0015318 GO:0016020 GO:0016043 GO:0019222 GO:0022857 GO:0022890 GO:0031323 GO:0031325 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065007 GO:0071840 GO:0098655 GO:1905157

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger TrkA_N

Protein Analysis

106

Amino Acids

11.63

Weight (kDa)

4.19

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01790 AT1G01790 AT4G04850 AT4G04850
fragaria_vesca	FvH4_2g11000
malus_domestica	MD05G1050600.v1.1 MD10G1058200.v1.1
prunus_persica	Prupe.8G077000_v2.0.a1 Prupe.8G077000_v2.0.a1
pyrus_communis	pycom05g04260 pycom05g04270 pycom10g04490
rosa_chinensis	RchiOBHm_Chr6g0269141 RchiOBHm_Chr6g0269211 RchiOBHm_Chr7g0201951
rosa_laevigata	RLG00000017131
rosa_multiflora	Rmu_co8385553.1_g000001 Rmu_sc0005353.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238290 Rroxscaffold_7G00198940
rosa_rugosa	Rorug05G0148000 Rorug05G0148100 Rorug06G0046600 Rorug06G0046600
rosa_samantha	Rh4DG004100 Rh6AG166300 Rh6BG171900 Rh6CG164800 Rh6CG165400 Rh6DG156300 Rh6DG156400 Rh6DG157000 Rh7AG286500
rosa_wichuraiana	Rw6G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	28
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	1 cut(s)	289
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	72
AluBI	AGCT	2 cut(s)	138, 184
AluI	AGCT	2 cut(s)	138, 184
Alw21I	GWGCWC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	28, 164
AsuHPI	GGTGA	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	40, 176
BccI	CCATC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BfmI	CTRYAG	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	2 cut(s)	29, 165
BlsI	GCNGC	2 cut(s)	30, 166
BmsI	GCATC	2 cut(s)	115, 151
BpiI	GAAGAC	1 cut(s)	102
Bsa29I	ATCGAT	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	264
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	3 cut(s)	160, 166, 313
BseMI	GCAATG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	40, 176
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	18, 22, 281
BspACI	CCGC	1 cut(s)	50
BspDI	ATCGAT	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	3 cut(s)	18, 22, 281
Bst4CI	ACNGT	3 cut(s)	179, 230, 315
Bst6I	CTCTTC	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	160, 166, 313
BstKTI	GATC	3 cut(s)	21, 25, 284
BstMBI	GATC	3 cut(s)	18, 22, 281
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	40, 176
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	160, 166, 313
BtsIMutI	CAGTG	1 cut(s)	184
BveI	ACCTGC	1 cut(s)	28
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	2 cut(s)	105, 173
CviJI	RGCY	4 cut(s)	31, 138, 184, 234
CviKI_1	RGCY	4 cut(s)	31, 138, 184, 234
CviQI	GTAC	1 cut(s)	71
DpnI	GATC	3 cut(s)	20, 24, 283
DpnII	GATC	3 cut(s)	18, 22, 281
DraIII	CACNNNGTG	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	2 cut(s)	108, 176
FaiI	YATR	4 cut(s)	35, 106, 174, 201
FatI	CATG	2 cut(s)	104, 172
Fnu4HI	GCNGC	2 cut(s)	29, 165
FokI	GGATG	2 cut(s)	167, 173
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	29, 165
GluI	GCNGC	2 cut(s)	29, 165
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	108, 176
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	94, 133, 196
HpyCH4III	ACNGT	3 cut(s)	179, 230, 315
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	4 cut(s)	28, 37, 164, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	108, 176
Kzo9I	GATC	3 cut(s)	18, 22, 281
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	2 cut(s)	23, 203
Lsp1109I	GCAGC	2 cut(s)	40, 176
LweI	GCATC	2 cut(s)	115, 151
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	3 cut(s)	20, 24, 283
MboI	GATC	3 cut(s)	18, 22, 281
MboII	GAAGA	5 cut(s)	107, 134, 218, 227, 282
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	1 cut(s)	57
MnlI	CCTC	4 cut(s)	112, 142, 271, 298
MseI	TTAA	3 cut(s)	14, 56, 113
MslI	CAYNNNNRTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeII	GATC	3 cut(s)	18, 22, 281
NlaIII	CATG	2 cut(s)	108, 176
PaqCI	CACCTGC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	30, 166
Psp124BI	GAGCTC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	281
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	14, 56, 113
SatI	GCNGC	2 cut(s)	29, 165
Sau3AI	GATC	3 cut(s)	18, 22, 281
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	5 cut(s)	42, 140, 186, 276, 290
SfaNI	GCATC	2 cut(s)	115, 151
SfcI	CTRYAG	1 cut(s)	26
SgeI	CNNG	8 cut(s)	50, 117, 130, 151, 185, 202, 242, 281
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	179, 230, 315
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	57
Tru1I	TTAA	3 cut(s)	14, 56, 113
Tru9I	TTAA	3 cut(s)	14, 56, 113
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	2 cut(s)	28, 164
TspDTI	ATGAA	2 cut(s)	228, 275
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.