Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003895

Physical Location & Seq

Genomic Coordinates Forward (+)

13782505 .. 13783685

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0148100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAGTCACTCAACCCATAACCTCCAGGCTCCAGGAGTACATGCACCAGCAGCAGTTCAAAGATACAATCAAGGTCCTGAAGGTCGCCAACAATTAGCTGATCCCTTCCATCATCACCGGCATGAAGGGGGATTCTGGACCGGATGTCGTGATGTCATGGTTTTCTGCTTCCTCTGCGATCCGTCGCTACTACGGAAATGGCTTACAAACTACATGCTTGATCCACTACCAAAGAAAAGAACTGAGGATCTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006996 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009643 GO:0009657 GO:0009658 GO:0009893 GO:0009987 GO:0010109 GO:0015075 GO:0015318 GO:0016020 GO:0016043 GO:0019222 GO:0022857 GO:0022890 GO:0031323 GO:0031325 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065007 GO:0071840 GO:0098655 GO:1905157

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger TrkA_N

Protein Analysis

85

Amino Acids

9.81

Weight (kDa)

7.83

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01790 AT1G01790 AT4G04850 AT4G04850
fragaria_vesca	FvH4_2g11000
malus_domestica	MD05G1050600.v1.1 MD10G1058200.v1.1
prunus_persica	Prupe.8G077000_v2.0.a1 Prupe.8G077000_v2.0.a1
pyrus_communis	pycom05g04260 pycom05g04270 pycom10g04490
rosa_chinensis	RchiOBHm_Chr6g0269141 RchiOBHm_Chr6g0269211 RchiOBHm_Chr7g0201951
rosa_laevigata	RLG00000017131
rosa_multiflora	Rmu_co8385553.1_g000001 Rmu_sc0005353.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238290 Rroxscaffold_7G00198940
rosa_rugosa	Rorug05G0148000 Rorug05G0148100 Rorug06G0046600 Rorug06G0046600
rosa_samantha	Rh4DG004100 Rh6AG166300 Rh6BG171900 Rh6CG164800 Rh6CG165400 Rh6DG156300 Rh6DG156400 Rh6DG157000 Rh7AG286500
rosa_wichuraiana	Rw6G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	95, 173, 215, 255
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	59
AhdI	GACNNNNNGTC	1 cut(s)	144
AjnI	CCWGG	2 cut(s)	24, 31
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
AlwI	GGATC	4 cut(s)	95, 173, 215, 255
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	74, 138
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	74, 138
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	117
BciT130I	CCWGG	2 cut(s)	26, 33
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	26, 33
Bme18I	GGWCC	2 cut(s)	74, 138
BmeRI	GACNNNNNGTC	1 cut(s)	144
BmgT120I	GGNCC	2 cut(s)	74, 138
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	2 cut(s)	26, 33
BpmI	CTGGAG	2 cut(s)	8, 15
BsaWI	WCCGGW	1 cut(s)	140
Bse118I	RCCGGY	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	26, 33
BseGI	GGATG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	118, 141
Bsp143I	GATC	4 cut(s)	100, 178, 220, 247
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	4 cut(s)	95, 173, 215, 255
BsrFI	RCCGGY	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	117
BssMI	GATC	4 cut(s)	100, 178, 220, 247
Bst2UI	CCWGG	2 cut(s)	26, 33
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	4 cut(s)	103, 181, 223, 250
BstMBI	GATC	4 cut(s)	100, 178, 220, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 174
BstNI	CCWGG	2 cut(s)	26, 33
BstNSI	RCATGY	2 cut(s)	44, 217
BstSCI	CCNGG	2 cut(s)	24, 31
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	74, 138
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	4 cut(s)	41, 122, 157, 214
CviJI	RGCY	3 cut(s)	29, 98, 202
CviKI_1	RGCY	3 cut(s)	29, 98, 202
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	4 cut(s)	102, 180, 222, 249
DpnII	GATC	4 cut(s)	100, 178, 220, 247
DriI	GACNNNNNGTC	1 cut(s)	144
Eam1105I	GACNNNNNGTC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	74, 138
Eco57I	CTGAAG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	24, 31
FaeI	CATG	4 cut(s)	44, 125, 160, 217
FaiI	YATR	5 cut(s)	18, 42, 123, 158, 215
FatI	CATG	4 cut(s)	40, 121, 156, 213
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	2 cut(s)	8, 15
HapII	CCGG	2 cut(s)	118, 141
Hin1II	CATG	4 cut(s)	44, 125, 160, 217
HinfI	GANTC	2 cut(s)	4, 132
HpaII	CCGG	2 cut(s)	118, 141
HphI	GGTGA	1 cut(s)	107
Hpy188III	TCNNGA	3 cut(s)	77, 136, 149
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	3 cut(s)	74, 115, 119
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 174
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	4 cut(s)	44, 125, 160, 217
Kzo9I	GATC	4 cut(s)	100, 178, 220, 247
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	11, 18, 38, 45, 60, 90, 121, 131, 154
Lsp1109I	GCAGC	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	4 cut(s)	102, 180, 222, 249
MboI	GATC	4 cut(s)	100, 178, 220, 247
MboII	GAAGA	1 cut(s)	242
MflI	RGATCY	1 cut(s)	247
MluCI	AATT	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	32, 182, 238
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	2 cut(s)	118, 141
MspR9I	CCNGG	2 cut(s)	26, 33
MvaI	CCWGG	2 cut(s)	26, 33
MwoI	GCNNNNNNNGC	2 cut(s)	50, 174
NdeII	GATC	4 cut(s)	100, 178, 220, 247
NlaIII	CATG	4 cut(s)	44, 125, 160, 217
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	2 cut(s)	44, 217
PfeI	GAWTC	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	24, 31
PspGI	CCWGG	2 cut(s)	24, 31
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	74, 138
PspPPI	RGGWCCY	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	120
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	4 cut(s)	100, 178, 220, 247
Sau96I	GGNCC	2 cut(s)	74, 138
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	26, 33
SetI	ASST	4 cut(s)	24, 76, 85, 100
SinI	GGWCC	2 cut(s)	74, 138
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	24, 31
TasI	AATT	1 cut(s)	92
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	2 cut(s)	171, 208
VpaK11BI	GGWCC	2 cut(s)	74, 138
XceI	RCATGY	2 cut(s)	44, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.