Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003895

Physical Location & Seq

Genomic Coordinates Forward (+)

13775654 .. 13776783

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0148000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAATCACTACAACCAGCATCACCAGGCTGAAGGAGTATATCCACCACCACCAACCTCATACCCTCCACCGCCAGCCGGGGCATATCCTCCTCCAGGGCACGCTTATCCTCCGCCACCAGTTCAAGGATACAATCAAGGTCCTTATGTTGTTCCACCACCAGTTTCATACCCCATGAAAAATAATGGACCAGCTGAGGGATACCCCGAAGGCCCTCAACAATCAGCTCCCTATAGGGGCTATAGGCACAAGGGAAAAGGCGGCGGATTTTGGACCGGATGTTGTTCTGCCATGTTTTGCTGCTGCCTCTGCGATTTGTGCTGCTTGCCTTGCTCAATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006996 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009643 GO:0009657 GO:0009658 GO:0009893 GO:0009987 GO:0010109 GO:0015075 GO:0015318 GO:0016020 GO:0016043 GO:0019222 GO:0022857 GO:0022890 GO:0031323 GO:0031325 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065007 GO:0071840 GO:0098655 GO:1905157

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger TrkA_N

Protein Analysis

114

Amino Acids

12.3

Weight (kDa)

7.55

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01790 AT1G01790 AT4G04850 AT4G04850
fragaria_vesca	FvH4_2g11000
malus_domestica	MD05G1050600.v1.1 MD10G1058200.v1.1
prunus_persica	Prupe.8G077000_v2.0.a1 Prupe.8G077000_v2.0.a1
pyrus_communis	pycom05g04260 pycom05g04270 pycom10g04490
rosa_chinensis	RchiOBHm_Chr6g0269141 RchiOBHm_Chr6g0269211 RchiOBHm_Chr7g0201951
rosa_laevigata	RLG00000017131
rosa_multiflora	Rmu_co8385553.1_g000001 Rmu_sc0005353.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238290 Rroxscaffold_7G00198940
rosa_rugosa	Rorug05G0148000 Rorug05G0148100 Rorug06G0046600 Rorug06G0046600
rosa_samantha	Rh4DG004100 Rh6AG166300 Rh6BG171900 Rh6CG164800 Rh6CG165400 Rh6DG156300 Rh6DG156400 Rh6DG157000 Rh7AG286500
rosa_wichuraiana	Rw6G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	71, 113, 261, 264
AcuI	CTGAAG	1 cut(s)	51
AfiI	CCNNNNNNNGG	5 cut(s)	77, 95, 125, 197, 236
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	24, 94
AluBI	AGCT	2 cut(s)	194, 227
AluI	AGCT	2 cut(s)	194, 227
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	3 cut(s)	300, 303, 321
AspS9I	GGNCC	4 cut(s)	140, 188, 212, 273
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	14
AvaII	GGWCC	3 cut(s)	140, 188, 273
BaeGI	GKGCMC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	287, 290, 308
BciT130I	CCWGG	2 cut(s)	26, 96
BciVI	GTATCC	2 cut(s)	122, 194
BcnI	CCSGG	1 cut(s)	79
BfmI	CTRYAG	2 cut(s)	232, 241
BfuI	GTATCC	2 cut(s)	122, 194
BisI	GCNGC	4 cut(s)	262, 301, 304, 322
BlsI	GCNGC	4 cut(s)	263, 302, 305, 323
Bme1390I	CCNGG	3 cut(s)	26, 79, 96
Bme18I	GGWCC	3 cut(s)	140, 188, 273
BmgT120I	GGNCC	4 cut(s)	140, 188, 212, 273
BmrFI	CCNGG	3 cut(s)	26, 79, 96
BmsI	GCATC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	78, 95
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	5 cut(s)	77, 95, 125, 197, 236
Bse1I	ACTGG	2 cut(s)	119, 161
BseBI	CCWGG	2 cut(s)	26, 96
BseDI	CCNNGG	2 cut(s)	78, 95
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	5 cut(s)	77, 95, 125, 197, 236
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	119, 161
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	287, 290, 308
BshFI	GGCC	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	78, 276
BslI	CCNNNNNNNGG	5 cut(s)	77, 95, 125, 197, 236
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	102
BspACI	CCGC	4 cut(s)	71, 113, 261, 264
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	119, 161
BssECI	CCNNGG	2 cut(s)	78, 95
Bst2UI	CCWGG	2 cut(s)	26, 96
BstC8I	GCNNGC	3 cut(s)	75, 102, 326
BstDEI	CTNAG	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	284
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 318, 330
BstNI	CCWGG	2 cut(s)	26, 96
BstSCI	CCNGG	3 cut(s)	24, 77, 94
BstSFI	CTRYAG	2 cut(s)	232, 241
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	287, 290, 308
BsuI	GTATCC	2 cut(s)	122, 194
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	284
Cac8I	GCNNGC	3 cut(s)	75, 102, 326
Cfr13I	GGNCC	4 cut(s)	140, 188, 212, 273
CviAII	CATG	2 cut(s)	175, 292
CviJI	RGCY	6 cut(s)	29, 77, 194, 213, 227, 240
CviKI_1	RGCY	6 cut(s)	29, 77, 194, 213, 227, 240
DdeI	CTNAG	1 cut(s)	195
EciI	GGCGGA	2 cut(s)	102, 279
Eco47I	GGWCC	3 cut(s)	140, 188, 273
Eco57I	CTGAAG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoO109I	RGGNCCY	2 cut(s)	140, 212
EcoRII	CCWGG	2 cut(s)	24, 94
FaeI	CATG	2 cut(s)	178, 295
FaiI	YATR	9 cut(s)	40, 61, 85, 147, 169, 176, 234, 243, 293
FatI	CATG	2 cut(s)	174, 291
Fnu4HI	GCNGC	4 cut(s)	262, 301, 304, 322
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	4 cut(s)	262, 301, 304, 322
GluI	GCNGC	4 cut(s)	262, 301, 304, 322
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	78, 276
Hin1II	CATG	2 cut(s)	178, 295
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	78, 276
HphI	GGTGA	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	26, 203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 318, 330
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	178, 295
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	3 cut(s)	287, 290, 308
LweI	GCATC	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	102
MnlI	CCTC	8 cut(s)	67, 75, 99, 102, 120, 190, 225, 317
MseI	TTAA	1 cut(s)	343
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	2 cut(s)	78, 276
MspR9I	CCNGG	3 cut(s)	26, 79, 96
MvaI	CCWGG	2 cut(s)	26, 96
MwoI	GCNNNNNNNGC	3 cut(s)	309, 318, 330
NciI	CCSGG	1 cut(s)	79
NlaIII	CATG	2 cut(s)	178, 295
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	4 cut(s)	263, 302, 305, 323
PpuMI	RGGWCCY	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	24, 94
PspGI	CCWGG	2 cut(s)	24, 94
PspPI	GGNCC	4 cut(s)	140, 188, 212, 273
PspPPI	RGGWCCY	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	343
SatI	GCNGC	4 cut(s)	262, 301, 304, 322
Sau96I	GGNCC	4 cut(s)	140, 188, 212, 273
ScrFI	CCNGG	3 cut(s)	26, 79, 96
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	4 cut(s)	59, 142, 196, 229
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	232, 241
SinI	GGWCC	3 cut(s)	140, 188, 273
SsiI	CCGC	4 cut(s)	71, 113, 261, 264
StyD4I	CCNGG	3 cut(s)	24, 77, 94
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TseI	GCWGC	3 cut(s)	300, 303, 321
TspDTI	ATGAA	3 cut(s)	17, 156, 191
VpaK11BI	GGWCC	3 cut(s)	140, 188, 273
XagI	CCTNNNNNAGG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.