Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003895

Physical Location & Seq

Genomic Coordinates Reverse (-)

23457875 .. 23460115

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG156300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATGACTTTGAGGAAGAGGCCTGAACGAAGCAAGAGAGTTAGAGTTATGGAGGCAGAGGGAAATGGTGAGAAAGGTGAAGAGAATGGTGCTTCTGTGAACAAGAAAGGTAGGAAAAAGGTGAAATTTGCAAAGGAAGGGGGAGCGAAAGGTGTTTTAGAAGTGGATAATGACAAGAAGCCCGATAGGAAGCGTGCGAAAACTGAGGAGGAAGATGGGAATGAGGTAGGCTATTCGTTTAGGCCTCTGAGGGAGCAGGGACATCTATCAACGGAGGAGCGTAAAAAGGATATAGCAGTCATACCTCTCTTAGTCATACTTCTGGTGCTGGAAAGCCAGAACATAGCGGAGGACAAATTGTTTATCTGTAAACGAGGAGGGGAGTTTGGCTTTGTAGTTTTTTCTCTGGCAAACATGCTTGGTGTGCTACCACTTGAGCTTAACAAGTTGCTCATAATTGTTGTTGTCTTGTCATGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC zf-4CXXC_R1

Protein Analysis

160

Amino Acids

18.01

Weight (kDa)

9.43

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01790 AT1G01790 AT4G04850 AT4G04850
fragaria_vesca	FvH4_2g11000
malus_domestica	MD05G1050600.v1.1 MD10G1058200.v1.1
prunus_persica	Prupe.8G077000_v2.0.a1 Prupe.8G077000_v2.0.a1
pyrus_communis	pycom05g04260 pycom05g04270 pycom10g04490
rosa_chinensis	RchiOBHm_Chr6g0269141 RchiOBHm_Chr6g0269211 RchiOBHm_Chr7g0201951
rosa_laevigata	RLG00000017131
rosa_multiflora	Rmu_co8385553.1_g000001 Rmu_sc0005353.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238290 Rroxscaffold_7G00198940
rosa_rugosa	Rorug05G0148000 Rorug05G0148100 Rorug06G0046600 Rorug06G0046600
rosa_samantha	Rh4DG004100 Rh6AG166300 Rh6BG171900 Rh6CG164800 Rh6CG165400 Rh6DG156300 Rh6DG156400 Rh6DG157000 Rh7AG286500
rosa_wichuraiana	Rw6G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	125
AluBI	AGCT	1 cut(s)	439
AluI	AGCT	1 cut(s)	439
AoxI	GGCC	2 cut(s)	20, 242
ApoI	RAATTY	1 cut(s)	125
AsuHPI	GGTGA	3 cut(s)	80, 89, 133
BccI	CCATC	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	455
BseMII	CTCAG	2 cut(s)	195, 239
BseRI	GAGGAG	3 cut(s)	221, 290, 390
BshFI	GGCC	2 cut(s)	22, 244
BslFI	GGGAC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	22, 244
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	2 cut(s)	22, 244
BspCNI	CTCAG	2 cut(s)	196, 240
Bst6I	CTCTTC	2 cut(s)	11, 75
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	3 cut(s)	204, 248, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstNSI	RCATGY	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	22, 244
Cac8I	GCNNGC	1 cut(s)	195
CviAII	CATG	2 cut(s)	415, 474
CviJI	RGCY	7 cut(s)	22, 181, 231, 244, 336, 390, 439
CviKI_1	RGCY	7 cut(s)	22, 181, 231, 244, 336, 390, 439
DdeI	CTNAG	3 cut(s)	204, 248, 310
Eam1104I	CTCTTC	2 cut(s)	11, 75
EarI	CTCTTC	2 cut(s)	11, 75
Eco147I	AGGCCT	2 cut(s)	22, 244
FaeI	CATG	2 cut(s)	418, 477
FaiI	YATR	8 cut(s)	50, 293, 302, 317, 344, 416, 455, 475
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	2 cut(s)	414, 473
HaeIII	GGCC	2 cut(s)	22, 244
Hin1II	CATG	2 cut(s)	418, 477
HphI	GGTGA	3 cut(s)	80, 89, 133
Hpy166II	GTNNAC	2 cut(s)	100, 371
Hpy188I	TCNGA	1 cut(s)	249
Hpy8I	GTNNAC	2 cut(s)	100, 371
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
HpyF3I	CTNAG	3 cut(s)	204, 248, 310
Hsp92II	CATG	2 cut(s)	418, 477
LmnI	GCTCC	3 cut(s)	143, 253, 277
LpnPI	CCDG	6 cut(s)	36, 242, 308, 314, 350, 392
MboII	GAAGA	3 cut(s)	28, 92, 224
MluCI	AATT	3 cut(s)	125, 356, 456
MseI	TTAA	2 cut(s)	441, 481
MwoI	GCNNNNNNNGC	1 cut(s)	424
NlaIII	CATG	2 cut(s)	418, 477
NspI	RCATGY	1 cut(s)	418
PceI	AGGCCT	2 cut(s)	22, 244
SaqAI	TTAA	2 cut(s)	441, 481
SetI	ASST	7 cut(s)	79, 112, 123, 154, 228, 307, 441
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	125, 356, 456
SseBI	AGGCCT	2 cut(s)	22, 244
SsiI	CCGC	1 cut(s)	347
StuI	AGGCCT	2 cut(s)	22, 244
TasI	AATT	3 cut(s)	125, 356, 456
Tru1I	TTAA	2 cut(s)	441, 481
Tru9I	TTAA	2 cut(s)	441, 481
TspGWI	ACGGA	1 cut(s)	287
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.