Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003895

Physical Location & Seq

Genomic Coordinates Forward (+)

44707348 .. 44717785

Gene Structure 10438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2565 bp

ATGTTGGAATCAGTGACTTGTTTTGGAAGCTATAAGGGATACGACATTATCAAACAAAAGAGCCTGTTTATGGCTTGCTCCATAGGCACATCACGGTTCTGTGGGCATTCTTTCAGTCCTTATGTTAGCAACCAGCAAGTGCGCTCGTTATCATATGCCAATAAGTACAAGATAAGACATAGTCCTTTTGTTTCAAGAAATTTCATTCAAGGCAATTCTTCGTTAACTGCCTCTGTACACTGCTGGCGAGGACTTTATTTCTCAAACCATAGACCAGGCCACTCAGCAAGATGGAGGATATATGCAACACTTGATGTTGCCAGCGCTGTTGATGTCATCAATGATTTAGGATTTGATACTTTGACGTTCTTAGCTGTGACTGTTCTGGTTGTTCCTGCATTCAAGATCATCAAAGCTAGCCCTATACTCGGTTTCTTCTTTGCGGGGATTGTACTCAATCAGTTTGGCTTGATTCGGAATCTTACAGATGTGAAAATTTTATCAGAATGGGGGATTCTTTTTTTGCTATTTGAGATGGGATTAGAGCTTTCATTTTCACGTCTAAAGGCTCTTGCAAAATTTGCCTTCGGCATGGGATTAACTCAGGTCGTATTATCTACTCTTGCTTTCACGGCATTTGAACTTCCTCCTAATGGGGCTGTTGGAACACAAATTTTGACGTTCCTCTTTAACTCAAGGCCTGATCTGGTCAATATCAGAAGCGTTGATGAAGCAGTGGTGATTGGTGCTGCTCTATCTTTATCTTCCTCAGCTTTTGTACTGCAGAGCTTACATAGCATAATATATAGCTACTTGCAGAGAAAGGTGAACTCCCTACAAGATTTGGCTCTGCAACTCTTGGGATACTTCTTTTACAGATATGTTAAGATTAGTGGAATAATCAGTGGATATAGCAGTCGTACCTCTCTTAGTCATACTTCCGGTGCTGGAAAGCCAGCTGATGCTGTAGAATGCAGATTGCATGAAGACATTATTTGTCCAAGTAGTTTTAAAGTCTCCGTCGCTCTTCTGCAGAACATAGCGGAGGACAGTATATGGCCAACGCTTTTGAAGGAGAGTTTAAAAGCTCTAGGTGGACTGGGGCTTCTTTCTCTTGGAGGAAAATTAGTTCTTAGGCGAATTTTTGAGTTTGTAGCAGAAGCAAGGAGCTCGGAGGCATTTGTTGCCCTTTGCTTACTGACAGTGGCTGGGACTTCACTTCTCACCCAGAAGTTGGGGTTCAGTGATACGCTTGGAGCATTTTTGGCTGGAGCACTGCTAGCAGAAACAAATTTCCGGACACAAATTGAAGCCGATATAAGGCCATTTAGAGGCCTACTTCTGGGGTTATTTTTTGTAACTACAGGGACATCCATTGACACGCAGCTTCTTTTTCGAGAGTGGCCGAATGTGCTTTCACTCTTGGCAGGTTTGATTGTCATCAAGACGCTGATAATAACAGCGATAGGCCCTCGTGTTGGACTCACTTTACAAGAAAGTGTAAGAATAGGATTGCTTTTGTCTCAAGGAGGGAGTTTGGCTTTGCTTGGTGTGCTACCACTTGAGCTTAACAAGTTGCTCATAATTGTTGTTGTCCTGTCAATGGCATTAACCCCATTGCTTAATGAAGCTGGAAAAAGAGCTGCTGCATATATTGATGACAATTTTGAAGCAGAGGATAAAGTTCCTGATGTGGTGAATTTCAATTCAAGTGAACCTGTTGTTATTCTTGGATTTGGACAAATGGGCCAGGTCCTTGCCAATTTCTTGTCCACTCCATTGGCTTCAGGAATAGATGGAGATGCTCTGGGATGGCCCTATGTAGCTTTTGATCTTGATCCATCTGTCGTGAAGGGGTCTAGAAAGCTCGGCTTTCCAATTCTTTACGGGGATGGATCACGTCCTGATGTTTTGCAATCTGCTGGTATATCTCTCCCAAAAGCTGTCTTGGTTATGTACACTGCAAGGGAGAAAACAATTGATGCCGTTCAAAGGCTTCGACTTGCTTTCCCCTCGATCCCTATTTATGCCAGAGCTCTGGACCTGAAGCACCTTTTAGATCTGAAAAAAGCAGGTGCAACAGATGCCATTATGGAAAGTGCAGAGACAAGTTTGCAGCTGGGCTCTAAGCTTTTGAAAGGGTTCGGTGTTATGTCTGATGATGTGAACTTTCTTCGTCAAATTGTTCGTGATTCCATGGAGCTGCAAGCTCAAGAAGTAGTCGGGAAAACTGATGATCAAGACTTGAATAATTTGAAGTCATTGCAGGTGAGAGTTGCTGACTTAATTGATGACCCCTCATCCATTTCATCAACTTCATCAGAAGACAATTCATGGGAGGTGAACAAGGTGGGTGCTTCTTATATCTCGACGTTGCAGGGAGATGTAGATGAAGCAGAGCATGACAGTGAACTCCAACGGTCAGGGCATACGGATGGTGAAGAAATTTCGCATGGTAACTTGGACACAAAGAATGGGTTTCCAGTTAAACCGCAAGATGCTGAGGGGGAGATAAATACAGTAGACCCATCAACCCGCCGTGTAACGACTAAGGATGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006996 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009643 GO:0009657 GO:0009658 GO:0009893 GO:0009987 GO:0010109 GO:0015075 GO:0015318 GO:0016020 GO:0016043 GO:0019222 GO:0022857 GO:0022890 GO:0031323 GO:0031325 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065007 GO:0071840 GO:0098655 GO:1905157

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger TrkA_N

Protein Analysis

854

Amino Acids

92.8

Weight (kDa)

5.85

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	126 - 264	1.5e-16	Sodium/hydrogen exchanger, transmembrane
Na_H_Exchanger	PF00999	329 - 542	2.4e-32	Sodium/hydrogen exchanger, transmembrane
TrkA_N	PF02254	574 - 698	2.2e-15	TrkA-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01790 AT1G01790 AT4G04850 AT4G04850
fragaria_vesca	FvH4_2g11000
malus_domestica	MD05G1050600.v1.1 MD10G1058200.v1.1
prunus_persica	Prupe.8G077000_v2.0.a1 Prupe.8G077000_v2.0.a1
pyrus_communis	pycom05g04260 pycom05g04270 pycom10g04490
rosa_chinensis	RchiOBHm_Chr6g0269141 RchiOBHm_Chr6g0269211 RchiOBHm_Chr7g0201951
rosa_laevigata	RLG00000017131
rosa_multiflora	Rmu_co8385553.1_g000001 Rmu_sc0005353.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238290 Rroxscaffold_7G00198940
rosa_rugosa	Rorug05G0148000 Rorug05G0148100 Rorug06G0046600 Rorug06G0046600
rosa_samantha	Rh4DG004100 Rh6AG166300 Rh6BG171900 Rh6CG164800 Rh6CG165400 Rh6DG156300 Rh6DG156400 Rh6DG157000 Rh7AG286500
rosa_wichuraiana	Rw6G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	2063, 2257
Acc36I	ACCTGC	3 cut(s)	1418, 2063, 2257
AccB7I	CCANNNNNTGG	1 cut(s)	1234
AccI	GTMKAC	1 cut(s)	2523
AccIII	TCCGGA	1 cut(s)	1296
AciI	CCGC	4 cut(s)	443, 1043, 2492, 2536
AclWI	GGATC	3 cut(s)	1832, 1903, 2011
AcoI	YGGCCR	2 cut(s)	1058, 1403
AcsI	RAATTY	8 cut(s)	199, 495, 578, 672, 1140, 1291, 1699, 2445
AcuI	CTGAAG	2 cut(s)	1770, 2066
AfaI	GTAC	6 cut(s)	167, 237, 453, 780, 922, 1958
AfeI	AGCGCT	1 cut(s)	325
AjiI	CACGTC	2 cut(s)	560, 1901
AjnI	CCWGG	2 cut(s)	274, 1749
AloI	GAACNNNNNNTCC	2 cut(s)	1113, 1145
Alw21I	GWGCWC	3 cut(s)	1172, 1276, 2038
Alw26I	GTCTC	3 cut(s)	1021, 1527, 2099
AlwI	GGATC	3 cut(s)	1832, 1903, 2011
AlwNI	CAGNNNCTG	1 cut(s)	1208
Aor13HI	TCCGGA	1 cut(s)	1296
Aor51HI	AGCGCT	1 cut(s)	325
AoxI	GGCC	9 cut(s)	277, 698, 1058, 1322, 1333, 1403, 1468, 1747, 1814
ApeKI	GCWGC	6 cut(s)	749, 1384, 1643, 1646, 2116, 2203
ApoI	RAATTY	8 cut(s)	199, 495, 578, 672, 1140, 1291, 1699, 2445
Asp700I	GAANNNNTTC	1 cut(s)	2141
AspLEI	GCGC	2 cut(s)	144, 326
AspS9I	GGNCC	5 cut(s)	1469, 1747, 1753, 1815, 2041
AsuHPI	GGTGA	7 cut(s)	751, 838, 1216, 1708, 2281, 2353, 2450
AsuNHI	GCTAGC	2 cut(s)	416, 1279
AvaII	GGWCC	2 cut(s)	1753, 2041
BalI	TGGCCA	1 cut(s)	1060
BanII	GRGCYC	3 cut(s)	1172, 2038, 2126
BauI	CACGAG	1 cut(s)	1473
BbsI	GAAGAC	2 cut(s)	993, 2331
Bbv12I	GWGCWC	3 cut(s)	1172, 1276, 2038
BbvCI	CCTCAGC	2 cut(s)	769, 2502
BbvI	GCAGC	6 cut(s)	736, 1396, 1630, 1633, 2128, 2190
BccI	CCATC	8 cut(s)	285, 529, 1790, 1806, 1849, 1886, 2429, 2536
BceAI	ACGGC	3 cut(s)	648, 1970, 2523
BcgI	CGANNNNNNTGC	2 cut(s)	1152, 1186
BciT130I	CCWGG	2 cut(s)	276, 1751
BciVI	GTATCC	2 cut(s)	32, 857
BclI	TGATCA	1 cut(s)	2236
BcoDI	GTCTC	3 cut(s)	1021, 1527, 2099
BfaI	CTAG	4 cut(s)	417, 1091, 1280, 1860
BfmI	CTRYAG	4 cut(s)	782, 966, 1031, 1362
BfoI	RGCGCY	1 cut(s)	327
BfuAI	ACCTGC	3 cut(s)	1418, 2063, 2257
BfuI	GTATCC	2 cut(s)	32, 857
BglII	AGATCT	1 cut(s)	2059
BisI	GCNGC	6 cut(s)	750, 1385, 1644, 1647, 2117, 2204
BlsI	GCNGC	6 cut(s)	751, 1386, 1645, 1648, 2118, 2205
Bme1390I	CCNGG	2 cut(s)	276, 1751
Bme18I	GGWCC	2 cut(s)	1753, 2041
BmgBI	CACGTC	2 cut(s)	560, 1901
BmgT120I	GGNCC	5 cut(s)	1469, 1747, 1753, 1815, 2041
BmrFI	CCNGG	2 cut(s)	276, 1751
BmrI	ACTGGG	1 cut(s)	1109
BmsI	GCATC	5 cut(s)	952, 1792, 1972, 2074, 2488
BmtI	GCTAGC	2 cut(s)	420, 1283
BmuI	ACTGGG	1 cut(s)	1109
BpiI	GAAGAC	2 cut(s)	993, 2331
BpmI	CTGGAG	1 cut(s)	1290
Bpu10I	CCTNAGC	2 cut(s)	769, 2502
BpuEI	CTTGAG	4 cut(s)	679, 1509, 1583, 2196
BsaBI	GATNNNNATC	2 cut(s)	1439, 1836
BsaJI	CCNNGG	1 cut(s)	2196
BsaWI	WCCGGW	2 cut(s)	941, 1296
Bse1I	ACTGG	2 cut(s)	1104, 2483
Bse3DI	GCAATG	2 cut(s)	1616, 2261
Bse8I	GATNNNNATC	2 cut(s)	1439, 1836
BseAI	TCCGGA	1 cut(s)	1296
BseBI	CCWGG	2 cut(s)	276, 1751
BseDI	CCNNGG	1 cut(s)	2196
BseGI	GGATG	6 cut(s)	1370, 1817, 1897, 2300, 2440, 2560
BseJI	GATNNNNATC	2 cut(s)	1439, 1836
BseMI	GCAATG	2 cut(s)	1616, 2261
BseMII	CTCAG	4 cut(s)	297, 617, 783, 2493
BseNI	ACTGG	2 cut(s)	1104, 2483
BseXI	GCAGC	6 cut(s)	736, 1396, 1630, 1633, 2128, 2190
BseYI	CCCAGC	2 cut(s)	1208, 2119
BsgI	GTGCAG	1 cut(s)	2121
BshFI	GGCC	9 cut(s)	279, 700, 1060, 1324, 1335, 1405, 1470, 1749, 1816
BsiHKAI	GWGCWC	3 cut(s)	1172, 1276, 2038
BsiSI	CCGG	2 cut(s)	942, 1297
BslFI	GGGAC	2 cut(s)	1225, 1381
BsmAI	GTCTC	3 cut(s)	1021, 1527, 2099
BsmFI	GGGAC	2 cut(s)	1225, 1381
BsmI	GAATGC	3 cut(s)	106, 398, 977
BsnI	GGCC	9 cut(s)	279, 700, 1060, 1324, 1335, 1405, 1470, 1749, 1816
Bsp1286I	GDGCHC	4 cut(s)	1172, 1276, 2038, 2126
Bsp13I	TCCGGA	1 cut(s)	1296
Bsp1407I	TGTACA	2 cut(s)	235, 1956
Bsp143I	GATC	8 cut(s)	405, 703, 1831, 1837, 1895, 2016, 2059, 2236
Bsp19I	CCATGG	1 cut(s)	2196
BspACI	CCGC	4 cut(s)	443, 1043, 2492, 2536
BspANI	GGCC	9 cut(s)	279, 700, 1060, 1324, 1335, 1405, 1470, 1749, 1816
BspCNI	CTCAG	4 cut(s)	296, 616, 782, 2494
BspEI	TCCGGA	1 cut(s)	1296
BspMAI	CTGCAG	2 cut(s)	786, 1035
BspMI	ACCTGC	3 cut(s)	1418, 2063, 2257
BspOI	GCTAGC	2 cut(s)	420, 1283
BspPI	GGATC	3 cut(s)	1832, 1903, 2011
BspQI	GCTCTTC	1 cut(s)	1032
BsrDI	GCAATG	2 cut(s)	1616, 2261
BsrGI	TGTACA	2 cut(s)	235, 1956
BsrI	ACTGG	2 cut(s)	1104, 2483
BssECI	CCNNGG	1 cut(s)	2196
BssMI	GATC	8 cut(s)	405, 703, 1831, 1837, 1895, 2016, 2059, 2236
BssSI	CACGAG	1 cut(s)	1473
BssT1I	CCWWGG	1 cut(s)	2196
Bst2BI	CACGAG	1 cut(s)	1473
Bst2UI	CCWGG	2 cut(s)	276, 1751
Bst4CI	ACNGT	8 cut(s)	96, 382, 1052, 1204, 2408, 2421, 2521, 2562
Bst6I	CTCTTC	1 cut(s)	1032
BstAPI	GCANNNNNTGC	3 cut(s)	581, 1184, 2084
BstAUI	TGTACA	2 cut(s)	235, 1956
BstC8I	GCNNGC	7 cut(s)	76, 245, 322, 418, 957, 1281, 2208
BstDEI	CTNAG	9 cut(s)	283, 370, 603, 769, 929, 1133, 2127, 2502, 2550
BstDSI	CCRYGG	1 cut(s)	2196
BstF5I	GGATG	6 cut(s)	1370, 1817, 1897, 2300, 2440, 2560
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	144, 326
BstKTI	GATC	8 cut(s)	408, 706, 1834, 1840, 1898, 2019, 2062, 2239
BstMAI	GTCTC	3 cut(s)	1021, 1527, 2099
BstMBI	GATC	8 cut(s)	405, 703, 1831, 1837, 1895, 2016, 2059, 2236
BstNI	CCWGG	2 cut(s)	276, 1751
BstSCI	CCNGG	2 cut(s)	274, 1749
BstSFI	CTRYAG	4 cut(s)	782, 966, 1031, 1362
BstV1I	GCAGC	6 cut(s)	736, 1396, 1630, 1633, 2128, 2190
BstV2I	GAAGAC	2 cut(s)	993, 2331
BstX2I	RGATCY	1 cut(s)	2059
BstXI	CCANNNNNNTGG	2 cut(s)	1780, 2038
BstYI	RGATCY	1 cut(s)	2059
BsuI	GTATCC	2 cut(s)	32, 857
BsuRI	GGCC	9 cut(s)	279, 700, 1060, 1324, 1335, 1405, 1470, 1749, 1816
BtgI	CCRYGG	1 cut(s)	2196
BtrI	CACGTC	2 cut(s)	560, 1901
BtsCI	GGATG	6 cut(s)	1370, 1817, 1897, 2300, 2440, 2560
BtsI	GCAGTG	4 cut(s)	238, 741, 1274, 1959
BtsIMutI	CAGTG	9 cut(s)	18, 238, 741, 910, 1209, 1249, 1274, 1959, 2413
BveI	ACCTGC	3 cut(s)	1418, 2063, 2257
Cac8I	GCNNGC	7 cut(s)	76, 245, 322, 418, 957, 1281, 2208
CaiI	CAGNNNCTG	1 cut(s)	1208
CfoI	GCGC	2 cut(s)	144, 326
Cfr13I	GGNCC	5 cut(s)	1469, 1747, 1753, 1815, 2041
CseI	GACGC	1 cut(s)	1456
Csp6I	GTAC	6 cut(s)	166, 236, 452, 779, 921, 1957
CviAII	CATG	6 cut(s)	592, 983, 2197, 2334, 2402, 2453
CviQI	GTAC	6 cut(s)	166, 236, 452, 779, 921, 1957
DdeI	CTNAG	9 cut(s)	283, 370, 603, 769, 929, 1133, 2127, 2502, 2550
DpnI	GATC	8 cut(s)	407, 705, 1833, 1839, 1897, 2018, 2061, 2238
DpnII	GATC	8 cut(s)	405, 703, 1831, 1837, 1895, 2016, 2059, 2236
DraI	TTTAAA	2 cut(s)	1012, 1083
EaeI	YGGCCR	2 cut(s)	1058, 1403
Eam1104I	CTCTTC	1 cut(s)	1032
EarI	CTCTTC	1 cut(s)	1032
Ecl136II	GAGCTC	2 cut(s)	1170, 2036
Eco130I	CCWWGG	1 cut(s)	2196
Eco147I	AGGCCT	2 cut(s)	700, 1335
Eco24I	GRGCYC	3 cut(s)	1172, 2038, 2126
Eco47I	GGWCC	2 cut(s)	1753, 2041
Eco47III	AGCGCT	1 cut(s)	325
Eco53kI	GAGCTC	2 cut(s)	1170, 2036
Eco57I	CTGAAG	2 cut(s)	1770, 2066
EcoICRI	GAGCTC	2 cut(s)	1170, 2036
EcoO109I	RGGNCCY	2 cut(s)	1469, 1753
EcoRII	CCWGG	2 cut(s)	274, 1749
EcoT14I	CCWWGG	1 cut(s)	2196
EcoT38I	GRGCYC	3 cut(s)	1172, 2038, 2126
ErhI	CCWWGG	1 cut(s)	2196
FaeI	CATG	6 cut(s)	595, 986, 2200, 2337, 2405, 2456
FalI	AAGNNNNNCTT	2 cut(s)	1856, 1888
FaqI	GGGAC	2 cut(s)	1225, 1381
FatI	CATG	6 cut(s)	591, 982, 2196, 2333, 2401, 2452
FauI	CCCGC	2 cut(s)	436, 2543
FauNDI	CATATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	2236
FblI	GTMKAC	1 cut(s)	2523
Fnu4HI	GCNGC	6 cut(s)	750, 1385, 1644, 1647, 2117, 2204
FokI	GGATG	5 cut(s)	1357, 1824, 1904, 2287, 2447
FriOI	GRGCYC	3 cut(s)	1172, 2038, 2126
Fsp4HI	GCNGC	6 cut(s)	750, 1385, 1644, 1647, 2117, 2204
FspBI	CTAG	4 cut(s)	417, 1091, 1280, 1860
GlaI	GCGC	2 cut(s)	143, 325
GluI	GCNGC	6 cut(s)	750, 1385, 1644, 1647, 2117, 2204
GsaI	CCCAGC	2 cut(s)	1212, 2123
GsuI	CTGGAG	1 cut(s)	1290
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	9 cut(s)	279, 700, 1060, 1324, 1335, 1405, 1470, 1749, 1816
HapII	CCGG	2 cut(s)	942, 1297
HgaI	GACGC	1 cut(s)	1456
HhaI	GCGC	2 cut(s)	144, 326
Hin1II	CATG	6 cut(s)	595, 986, 2200, 2337, 2405, 2456
Hin6I	GCGC	2 cut(s)	142, 324
HinP1I	GCGC	2 cut(s)	142, 324
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	2129
HinfI	GANTC	6 cut(s)	8, 472, 478, 514, 1482, 2192
HpaI	GTTAAC	1 cut(s)	225
HpaII	CCGG	2 cut(s)	942, 1297
HphI	GGTGA	7 cut(s)	751, 838, 1216, 1708, 2281, 2353, 2450
Hpy188I	TCNGA	7 cut(s)	477, 505, 719, 1174, 2064, 2158, 2323
Hpy99I	CGWCG	2 cut(s)	1025, 2374
HpyAV	CCTTC	3 cut(s)	595, 1066, 1846
HpyCH4III	ACNGT	8 cut(s)	96, 382, 1052, 1204, 2408, 2421, 2521, 2562
HpyCH4IV	ACGT	5 cut(s)	365, 559, 680, 1900, 2372
HpyF3I	CTNAG	9 cut(s)	283, 370, 603, 769, 929, 1133, 2127, 2502, 2550
HpySE526I	ACGT	5 cut(s)	365, 559, 680, 1900, 2372
Hsp92II	CATG	6 cut(s)	595, 986, 2200, 2337, 2405, 2456
HspAI	GCGC	2 cut(s)	142, 324
Kpn2I	TCCGGA	1 cut(s)	1296
Ksp22I	TGATCA	1 cut(s)	2236
KspAI	GTTAAC	1 cut(s)	225
Kzo9I	GATC	8 cut(s)	405, 703, 1831, 1837, 1895, 2016, 2059, 2236
LguI	GCTCTTC	1 cut(s)	1032
LmnI	GCTCC	5 cut(s)	83, 1167, 1256, 1271, 2200
Lsp1109I	GCAGC	6 cut(s)	736, 1396, 1630, 1633, 2128, 2190
LweI	GCATC	5 cut(s)	952, 1792, 1972, 2074, 2488
MaeI	CTAG	4 cut(s)	417, 1091, 1280, 1860
MaeII	ACGT	5 cut(s)	365, 559, 680, 1900, 2372
MaeIII	GTNAC	5 cut(s)	13, 376, 1357, 2456, 2542
MalI	GATC	8 cut(s)	407, 705, 1833, 1839, 1897, 2018, 2061, 2238
MboI	GATC	8 cut(s)	405, 703, 1831, 1837, 1895, 2016, 2059, 2236
MboII	GAAGA	8 cut(s)	210, 427, 756, 998, 1019, 2165, 2336, 2453
MfeI	CAATTG	1 cut(s)	1977
MflI	RGATCY	1 cut(s)	2059
MhlI	GDGCHC	4 cut(s)	1172, 1276, 2038, 2126
MlsI	TGGCCA	1 cut(s)	1060
MluNI	TGGCCA	1 cut(s)	1060
MlyI	GAGTC	1 cut(s)	1476
MmeI	TCCRAC	3 cut(s)	643, 1459, 2440
Mox20I	TGGCCA	1 cut(s)	1060
MroI	TCCGGA	1 cut(s)	1296
MroXI	GAANNNNTTC	1 cut(s)	2141
MscI	TGGCCA	1 cut(s)	1060
MslI	CAYNNNNRTG	2 cut(s)	2406, 2433
Msp20I	TGGCCA	1 cut(s)	1060
MspA1I	CMGCKG	2 cut(s)	959, 2119
MspI	CCGG	2 cut(s)	942, 1297
MspR9I	CCNGG	2 cut(s)	276, 1751
MunI	CAATTG	1 cut(s)	1977
Mva1269I	GAATGC	3 cut(s)	106, 398, 977
MvaI	CCWGG	2 cut(s)	276, 1751
NcoI	CCATGG	1 cut(s)	2196
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	8 cut(s)	405, 703, 1831, 1837, 1895, 2016, 2059, 2236
NheI	GCTAGC	2 cut(s)	416, 1279
NlaIII	CATG	6 cut(s)	595, 986, 2200, 2337, 2405, 2456
NmeAIII	GCCGAG	1 cut(s)	1848
NmuCI	GTSAC	2 cut(s)	13, 376
PaqCI	CACCTGC	2 cut(s)	2063, 2257
PceI	AGGCCT	2 cut(s)	700, 1335
PciSI	GCTCTTC	1 cut(s)	1032
PctI	GAATGC	3 cut(s)	106, 398, 977
PdmI	GAANNNNTTC	1 cut(s)	2141
PfeI	GAWTC	5 cut(s)	8, 472, 478, 514, 2192
PflFI	GACNNNGTC	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	1234
PkrI	GCNGC	6 cut(s)	751, 1386, 1645, 1648, 2118, 2205
PleI	GAGTC	1 cut(s)	1476
PpsI	GAGTC	1 cut(s)	1476
PpuMI	RGGWCCY	1 cut(s)	1753
Psp124BI	GAGCTC	2 cut(s)	1172, 2038
Psp5II	RGGWCCY	1 cut(s)	1753
Psp6I	CCWGG	2 cut(s)	274, 1749
PspFI	CCCAGC	2 cut(s)	1208, 2119
PspGI	CCWGG	2 cut(s)	274, 1749
PspPI	GGNCC	5 cut(s)	1469, 1747, 1753, 1815, 2041
PspPPI	RGGWCCY	1 cut(s)	1753
PstI	CTGCAG	2 cut(s)	786, 1035
PstNI	CAGNNNCTG	1 cut(s)	1208
PsuI	RGATCY	1 cut(s)	2059
PsyI	GACNNNGTC	1 cut(s)	180
PvuII	CAGCTG	2 cut(s)	959, 2119
RsaI	GTAC	6 cut(s)	167, 237, 453, 780, 922, 1958
RsaNI	GTAC	6 cut(s)	166, 236, 452, 779, 921, 1957
RseI	CAYNNNNRTG	2 cut(s)	2406, 2433
SacI	GAGCTC	2 cut(s)	1172, 2038
SapI	GCTCTTC	1 cut(s)	1032
SatI	GCNGC	6 cut(s)	750, 1385, 1644, 1647, 2117, 2204
Sau3AI	GATC	8 cut(s)	405, 703, 1831, 1837, 1895, 2016, 2059, 2236
Sau96I	GGNCC	5 cut(s)	1469, 1747, 1753, 1815, 2041
SchI	GAGTC	1 cut(s)	1476
ScrFI	CCNGG	2 cut(s)	276, 1751
SduI	GDGCHC	4 cut(s)	1172, 1276, 2038, 2126
SfaNI	GCATC	5 cut(s)	952, 1792, 1972, 2074, 2488
SfcI	CTRYAG	4 cut(s)	782, 966, 1031, 1362
SinI	GGWCC	2 cut(s)	1753, 2041
SmiMI	CAYNNNNRTG	2 cut(s)	2406, 2433
SmlI	CTYRAG	4 cut(s)	694, 1524, 1562, 2211
SmoI	CTYRAG	4 cut(s)	694, 1524, 1562, 2211
SseBI	AGGCCT	2 cut(s)	700, 1335
SsiI	CCGC	4 cut(s)	443, 1043, 2492, 2536
SspMI	CTAG	4 cut(s)	417, 1091, 1280, 1860
SstI	GAGCTC	2 cut(s)	1172, 2038
StuI	AGGCCT	2 cut(s)	700, 1335
StyD4I	CCNGG	2 cut(s)	274, 1749
StyI	CCWWGG	1 cut(s)	2196
TaaI	ACNGT	8 cut(s)	96, 382, 1052, 1204, 2408, 2421, 2521, 2562
TaiI	ACGT	5 cut(s)	368, 562, 683, 1903, 2375
TaqI	TCGA	4 cut(s)	1396, 1999, 2015, 2369
TatI	WGTACW	5 cut(s)	165, 235, 451, 778, 1956
TfiI	GAWTC	5 cut(s)	8, 472, 478, 514, 2192
TscAI	CASTG	9 cut(s)	18, 245, 741, 910, 1209, 1249, 1281, 1966, 2413
TseFI	GTSAC	2 cut(s)	13, 376
TseI	GCWGC	6 cut(s)	749, 1384, 1643, 1646, 2116, 2203
Tsp45I	GTSAC	2 cut(s)	13, 376
TspDTI	ATGAA	9 cut(s)	193, 540, 744, 999, 1641, 2298, 2307, 2322, 2406
TspGWI	ACGGA	2 cut(s)	1009, 2447
TspRI	CASTG	9 cut(s)	18, 245, 741, 910, 1209, 1249, 1281, 1966, 2413
Tth111I	GACNNNGTC	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	1234
VpaK11BI	GGWCC	2 cut(s)	1753, 2041
XapI	RAATTY	8 cut(s)	199, 495, 578, 672, 1140, 1291, 1699, 2445
XbaI	TCTAGA	1 cut(s)	1859
XmiI	GTMKAC	1 cut(s)	2523
XmnI	GAANNNNTTC	1 cut(s)	2141
XspI	CTAG	4 cut(s)	417, 1091, 1280, 1860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.