Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003895

Physical Location & Seq

Genomic Coordinates Reverse (-)

26344806 .. 26347744

Gene Structure 2939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24142

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTGTTATAAGGGTGAGGATAGTTTGGGAAACGATCAGAAGGAAGAAGTTGTTGTGAGTGTGAAGAAGAAGAAGAAGAAGCCTGGGAGGAAGAGTAAGAAGGGTTTGGTGGGAAATGGTGATGGAGGTCTAAAGGAGGTTACTTTTGGTGGTGATGAGATTGCTATGATGACTTTGAGGAAGAGGCCTGAACGGAACAAGAGAGTTAGAGTTATGGAGGTAGAGGGAAATGGTGAGAAAGGTGAAGAGAATGGTGCTTCTGTGAACAAGAAAGGTAGGAAAAAGGTGAAATTTGCAAAGGAAGGGGGAGCGAAAGGTGTTTTAGAAGTGGATAATGACAAGAAGCGCGATAGGAAGCGTGCGAAAACTGAGGAGGAAGATGGGAATGAGGTAGGCTATTCGTTTAGGCCTCTGAGGGAGCAGGGACATCTATCAACGGAGGAGCGTAGAAAGGAGGTACCCCTAATGTGCCACCAATGTCAGAGGAATGATAAGGGAAGGGTTGTTCGGTGCAAAAAGTGCAGGACAAAAGAAGGTGAACTCCCTACAAGATTTGGTTCTGCAACTCTTATGATACTTCTTTTACAGGATATAGCAGTCGTACCTCTCTTAGTCATACTTCTGGTGCTGGAAAGCCAGTTTGTGGCAGAAGCAAGGAGCTCAGAGGCATTTGTTGCCCTTTGCTTGCTGACGGTGGCGGGGACTTCACTTCTCACCCAGAAGTTGGGGTTCAGTGATACGGTTTATACGCAGATACTGCTTGGTGTGCTACCACTTGAGCTTAACAAGTTGCTCATAATTGTTGTTGTTCTGTCATGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC zf-4CXXC_R1

Protein Analysis

274

Amino Acids

30.52

Weight (kDa)

9.54

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01790 AT1G01790 AT4G04850 AT4G04850
fragaria_vesca	FvH4_2g11000
malus_domestica	MD05G1050600.v1.1 MD10G1058200.v1.1
prunus_persica	Prupe.8G077000_v2.0.a1 Prupe.8G077000_v2.0.a1
pyrus_communis	pycom05g04260 pycom05g04270 pycom10g04490
rosa_chinensis	RchiOBHm_Chr6g0269141 RchiOBHm_Chr6g0269211 RchiOBHm_Chr7g0201951
rosa_laevigata	RLG00000017131
rosa_multiflora	Rmu_co8385553.1_g000001 Rmu_sc0005353.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238290 Rroxscaffold_7G00198940
rosa_rugosa	Rorug05G0148000 Rorug05G0148100 Rorug06G0046600 Rorug06G0046600
rosa_samantha	Rh4DG004100 Rh6AG166300 Rh6BG171900 Rh6CG164800 Rh6CG165400 Rh6DG156300 Rh6DG156400 Rh6DG157000 Rh7AG286500
rosa_wichuraiana	Rw6G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	457
AccB7I	CCANNNNNTGG	2 cut(s)	643, 724
AccII	CGCG	1 cut(s)	348
AciI	CCGC	1 cut(s)	698
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	2 cut(s)	459, 603
AfiI	CCNNNNNNNGG	2 cut(s)	643, 724
AjnI	CCWGG	1 cut(s)	82
AloI	GAACNNNNNNTCC	2 cut(s)	489, 521
AluBI	AGCT	2 cut(s)	660, 781
AluI	AGCT	2 cut(s)	660, 781
Alw21I	GWGCWC	1 cut(s)	662
AlwNI	CAGNNNCTG	1 cut(s)	757
AoxI	GGCC	2 cut(s)	185, 407
ApoI	RAATTY	1 cut(s)	290
Asp718I	GGTACC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	348
AsuHPI	GGTGA	8 cut(s)	26, 131, 164, 245, 254, 298, 548, 706
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	662
Bbv12I	GWGCWC	1 cut(s)	662
BccI	CCATC	2 cut(s)	116, 374
BciT130I	CCWGG	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	797
BsaJI	CCNNGG	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 724
Bse1I	ACTGG	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	643, 724
BseMII	CTCAG	3 cut(s)	360, 404, 675
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	2 cut(s)	386, 455
BsgI	GTGCAG	1 cut(s)	541
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	187, 409
BshNI	GGYRCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	662
BslFI	GGGAC	2 cut(s)	438, 715
BslI	CCNNNNNNNGG	2 cut(s)	643, 724
BsmFI	GGGAC	2 cut(s)	438, 715
BsnI	GGCC	2 cut(s)	187, 409
Bsp1286I	GDGCHC	1 cut(s)	662
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	698
BspANI	GGCC	2 cut(s)	187, 409
BspCNI	CTCAG	3 cut(s)	361, 405, 674
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	637
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	694, 742
Bst6I	CTCTTC	3 cut(s)	86, 176, 240
BstAPI	GCANNNNNTGC	3 cut(s)	519, 674, 757
BstC8I	GCNNGC	2 cut(s)	360, 686
BstDEI	CTNAG	4 cut(s)	369, 413, 610, 661
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	519, 674, 757, 766
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	187, 409
BtsIMutI	CAGTG	1 cut(s)	739
Cac8I	GCNNGC	2 cut(s)	360, 686
CaiI	CAGNNNCTG	1 cut(s)	757
CfoI	GCGC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	458, 602
CviAII	CATG	1 cut(s)	816
CviJI	RGCY	7 cut(s)	82, 187, 396, 409, 636, 660, 781
CviKI_1	RGCY	7 cut(s)	82, 187, 396, 409, 636, 660, 781
CviQI	GTAC	2 cut(s)	458, 602
DdeI	CTNAG	4 cut(s)	369, 413, 610, 661
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	86, 176, 240
EarI	CTCTTC	3 cut(s)	86, 176, 240
Ecl136II	GAGCTC	1 cut(s)	660
Eco147I	AGGCCT	2 cut(s)	187, 409
Eco24I	GRGCYC	1 cut(s)	662
Eco53kI	GAGCTC	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	662
FaeI	CATG	1 cut(s)	819
FaiI	YATR	9 cut(s)	9, 167, 215, 572, 593, 617, 747, 797, 817
FaqI	GGGAC	2 cut(s)	438, 715
FatI	CATG	1 cut(s)	815
FauI	CCCGC	1 cut(s)	691
FriOI	GRGCYC	1 cut(s)	662
GlaI	GCGC	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	187, 409
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	819
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HphI	GGTGA	8 cut(s)	26, 131, 164, 245, 254, 298, 548, 706
Hpy166II	GTNNAC	2 cut(s)	265, 539
Hpy188I	TCNGA	4 cut(s)	39, 414, 483, 664
Hpy8I	GTNNAC	2 cut(s)	265, 539
HpyAV	CCTTC	5 cut(s)	34, 94, 296, 492, 527
HpyCH4III	ACNGT	2 cut(s)	694, 742
HpyCH4V	TGCA	4 cut(s)	296, 513, 522, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	519, 674, 757, 766
HpyF3I	CTNAG	4 cut(s)	369, 413, 610, 661
Hsp92II	CATG	1 cut(s)	819
HspAI	GCGC	1 cut(s)	346
KpnI	GGTACC	1 cut(s)	461
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	4 cut(s)	308, 418, 442, 657
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	662
MluCI	AATT	2 cut(s)	290, 798
MseI	TTAA	2 cut(s)	783, 823
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	4 cut(s)	519, 674, 757, 766
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	819
NlaIV	GGNNCC	1 cut(s)	459
PceI	AGGCCT	2 cut(s)	187, 409
PflMI	CCANNNNNTGG	2 cut(s)	643, 724
PsiI	TTATAA	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	662
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	757
RsaI	GTAC	2 cut(s)	459, 603
RsaNI	GTAC	2 cut(s)	458, 602
SacI	GAGCTC	1 cut(s)	662
SaqAI	TTAA	2 cut(s)	783, 823
Sau3AI	GATC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse9I	AATT	2 cut(s)	290, 798
SseBI	AGGCCT	2 cut(s)	187, 409
SsiI	CCGC	1 cut(s)	698
SstI	GAGCTC	1 cut(s)	662
StuI	AGGCCT	2 cut(s)	187, 409
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	694, 742
TasI	AATT	2 cut(s)	290, 798
Tru1I	TTAA	2 cut(s)	783, 823
Tru9I	TTAA	2 cut(s)	783, 823
TscAI	CASTG	1 cut(s)	739
TspGWI	ACGGA	2 cut(s)	208, 452
TspRI	CASTG	1 cut(s)	739
Van91I	CCANNNNNTGG	2 cut(s)	643, 724
XapI	RAATTY	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.