Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8385553.1

Orthogroup ID

OG0003895

Physical Location & Seq

Genomic Coordinates Forward (+)

448 .. 1110

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8385553.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggcgagagggggaggcagaggaagagggagatgggcaaagcggcaaacccataacccaaatcaaactgaagatgttgctgtcaaagttggtgaagatggtgttggggttgttctttctgagataaaggctgtgtcttttggtggtgtagagaagggtgaggacagtttgggaaacgatcaaaaggaagaagttgctgtgagtgtgaagaagaagaagaagcctgggaggaagagtaagaaggttttggtgggaaatggtgatggaggtctaaaggaggttgcttttggtggtgatgagatttctatgatgactttgaggaagaggcctgaacggaagaagagagttagagttatggaggcagagggaaatggtgagaaaggtaaagagaatggtgcttctgtgaacaagaagggtaggaaaaaggtggcatttgcgaaggaagggggaaagaaaggtgttttagaagtggataatgacaagaagcgcgataggaagcgtgcgaaaactgaggaggaagatgggaatgaggtaggctattcgtttaggcctctgagggagcagggacatctatcagccgaggagcgtaaaaaggtgagggttattatgattctctggttatgttctgttgttaccattgtgttttatttttattttttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC zf-4CXXC_R1

Protein Analysis

220

Amino Acids

24.42

Weight (kDa)

9.92

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01790 AT1G01790 AT4G04850 AT4G04850
fragaria_vesca	FvH4_2g11000
malus_domestica	MD05G1050600.v1.1 MD10G1058200.v1.1
prunus_persica	Prupe.8G077000_v2.0.a1 Prupe.8G077000_v2.0.a1
pyrus_communis	pycom05g04260 pycom05g04270 pycom10g04490
rosa_chinensis	RchiOBHm_Chr6g0269141 RchiOBHm_Chr6g0269211 RchiOBHm_Chr7g0201951
rosa_laevigata	RLG00000017131
rosa_multiflora	Rmu_co8385553.1_g000001 Rmu_sc0005353.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238290 Rroxscaffold_7G00198940
rosa_rugosa	Rorug05G0148000 Rorug05G0148100 Rorug06G0046600 Rorug06G0046600
rosa_samantha	Rh4DG004100 Rh6AG166300 Rh6BG171900 Rh6CG164800 Rh6CG165400 Rh6DG156300 Rh6DG156400 Rh6DG157000 Rh7AG286500
rosa_wichuraiana	Rw6G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	489
AciI	CCGC	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AoxI	GGCC	2 cut(s)	326, 548
AspLEI	GCGC	1 cut(s)	489
AsuHPI	GGTGA	6 cut(s)	104, 170, 272, 305, 386, 607
BccI	CCATC	4 cut(s)	27, 92, 257, 515
BciT130I	CCWGG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	224, 579
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	224, 579
BseMII	CTCAG	3 cut(s)	111, 501, 545
BseRI	GAGGAG	2 cut(s)	527, 596
Bsh1236I	CGCG	1 cut(s)	489
BshFI	GGCC	2 cut(s)	328, 550
BslFI	GGGAC	1 cut(s)	579
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	2 cut(s)	328, 550
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	2 cut(s)	328, 550
BspCNI	CTCAG	3 cut(s)	112, 502, 546
BspFNI	CGCG	1 cut(s)	489
BssECI	CCNNGG	2 cut(s)	224, 579
BssMI	GATC	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	4 cut(s)	19, 227, 317, 335
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	3 cut(s)	120, 510, 554
BstFNI	CGCG	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstUI	CGCG	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	328, 550
Cac8I	GCNNGC	1 cut(s)	501
CfoI	GCGC	1 cut(s)	489
CviJI	RGCY	6 cut(s)	131, 223, 328, 537, 550, 578
CviKI_1	RGCY	6 cut(s)	131, 223, 328, 537, 550, 578
DdeI	CTNAG	3 cut(s)	120, 510, 554
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eam1104I	CTCTTC	4 cut(s)	19, 227, 317, 335
EarI	CTCTTC	4 cut(s)	19, 227, 317, 335
Eco147I	AGGCCT	2 cut(s)	328, 550
Eco57I	CTGAAG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	223
FaiI	YATR	5 cut(s)	54, 308, 356, 608, 622
FaqI	GGGAC	1 cut(s)	579
Fnu4HI	GCNGC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	44
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	328, 550
HhaI	GCGC	1 cut(s)	489
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HinfI	GANTC	1 cut(s)	610
HphI	GGTGA	6 cut(s)	104, 170, 272, 305, 386, 607
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	121, 555
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	5 cut(s)	148, 235, 406, 433, 437
HpyCH4III	ACNGT	1 cut(s)	167
HpyF3I	CTNAG	3 cut(s)	120, 510, 554
HspAI	GCGC	1 cut(s)	487
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	559, 583
LpnPI	CCDG	5 cut(s)	210, 237, 342, 548, 601
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MseI	TTAA	1 cut(s)	661
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	489
NdeII	GATC	1 cut(s)	178
NmeAIII	GCCGAG	1 cut(s)	604
PceI	AGGCCT	2 cut(s)	328, 550
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	661
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	8 cut(s)	246, 271, 282, 385, 429, 460, 534, 597
SseBI	AGGCCT	2 cut(s)	328, 550
SsiI	CCGC	1 cut(s)	43
StuI	AGGCCT	2 cut(s)	328, 550
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	167
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	1 cut(s)	661
Tru9I	TTAA	1 cut(s)	661
TspGWI	ACGGA	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.