Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003895

Physical Location & Seq

Genomic Coordinates Reverse (-)

26587996 .. 26600264

Gene Structure 12269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G014360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2460 bp

ATGTTGGAGTCAGTGACTTGTTTTGGAAGCTATAAGGGATACGACATTATCAAACAAAAGAGCCCATTTATGGCTTGCTCCATAGGCACATCACGGTTATGTGGGCATCCTTTCAGTCCTTATGTTAGTAACCAGCAAGTGCGCTCGTTATCATATGCCAATAAGTACAAGATAAGACATAGTCCTTTTGTTTCAAGAAATTTCATTCAAGGCAATTCTTCATTAACTTCCTCTGTACACTGCTGGCGAGGATTTTATTTCTCAAACCATAGACCTGGCCAGTCAGCAAGATGGAGGATATATGCAACACTTGATGTTGCCAGCGCTGTTGATGTCATCAATGATTTAGGATTTGATACTCTGACGTTCTTAGCTGTGACTGTTCTGGTTGTTCCTGCATTCAAGATCATCAAAGCTAGCCCTATACTCGGTTTCTTCTTTGCGGGGATTGTACTCAATCAGTTTGGCTTGATTCGGAATCTTACAGATGTGAAAATTTTATCAGAATGGGGGATTCTTTTTTTGCTATTTGAGATGGGATTAGAGCTGTCATTTTCACGTCTAAAGGCTCTTGCAAAATTTGCCTTCGGCATGGGATTAACTCAGGTCGTATTATCTACTCTTGCTTTCACAGCATTTGAACTTCCTCCTAATGGGGCTATTGGAACACAAATTTTGACGTTCCTCTTTAACTCAAGGCCTGATCTGGTCAATATCAGAAGCATTGATGAAGCAGTAGTGATTGGTGCTGCTCTATCTTTATCTTCCTCAGCTTTTGTACTGCAGCTACTTGCAGAGAAAGGTGAACTCCCTACAAGATTTGGCTCTGCAACTCTTGGGATACTTCTTTTACAGGATATAGCAGTCGTACCTCTCTTAGTCATACTTCCCGTGCTGGAAAGCCAGAACATAGCGGAGGACAGTATATGGCCAATGCTTTTGAAGGAGAGTTTAAAAGCTCTAGGTGGGCTGGGACTTCTTTCTCTTGGAGGAAAATTAGTTCTTAGGCGAATTTTTGAGTTTGTAGCAGAAGCAAGGAGCTCAGAGGCATTTGTTGCCCTTTGCTTACTGACAGTGGCTGGGACTTCACTTGTCACCCAGCAGTTGGGGTTCAGTGATACGCTTGGAGCATTTTTGGCTGGAGCACTGCTAGCAGAAACAAATTTCCGGACACAAATTGAAGCCGATATAAGGCCATTTAGAGGCTTACTTCTGGGGTTATTTTTTGTAACTACAGGGACGTCCATTGACACGCAGCTTCTTTTTCGAGAGTGGCCGAATGTGCTTTCACTCTTGGCGGGTTTGATTGTCATCAAGACGCTGATAATAACAGCGATAGGCCCTCGTGTTGGACTCACTTTACAAGAAAGTGTAAGAATAGGATTGCTTTTGTCTCAAGGAGGGGAGTTTGGCTTTGTAGTTTTTTCTCTTGCAAACAGGCTTGGTGTGCTACCACTTGAGCTTAACAAGTTGCTCATAATTGTTGTTGTCCTGTCAATGGCATTAACCCCATTGCTTAATGAAGCTGGAAGAAGAGCTGCTGCATATATTGATGACAATTTTGAAGCAGAGGATAAAGTTCCTGATGTGGTGAATTTCAATTCAAGTGAACCTGTTGTTATTCTTGGATTTGGACAAATGGGCCAGGTCCTTGCCAATTTCTTGTCCACTCCATTGGCTTCAGGAATAGATGGAGATTCTCTGGGATGGCCCTATGTAGCTTTTGATCTTGATCCATCTGTCGTGAAGGGGTCTAGAAAGCTCGGCTTTCCAATTCTTTACGGGGATGGATCACGTCCTGATGTTTTGCAATCTGCTGGTATATCTCTCCCAAAAGCTGTCTTGGTTATGTACACTGCAAGGGAGAAAACAATTGATGCCGTTCAAAGGCTTCGACTTGCTTTCCCTTCAATCCCTATTTATGCCAGAGCTCTGGACCTGAAGCACCTTTTAGATCTGAAAAAAGCAGGTGCAACAGATGCCATTATGGAAAGTGCAGAGACAAGTTTGCAGCTGGGCTCTAAGCTTTTGAAAGGGTTCGGTGTTATGTCTGATGATGTGAACTTTCTTCGTCAAATTGTTCGTGATTCCATGGAGCTGCAAGCTCAAGAAGTAGTCGGGAAAACTGATGATCAAGACTTGAATAATTTGAAGTCATTGCAGGTGAGAGTTGCTGACTTAATTGATGACCCCTCATCCGTTTCATCAACTTCATCGGAAGACAATTCATGGGAGGTAAACAAGGTGGGTGCTTCTTATATCTCGACGTTGCAGGGAGATGTAGATGAAGCAGAGCATGACAGTGAACTCCAACGGTCAGGGCATACGGATGGTGAAGAAATTTCGCATGGTAACTTAGACACAAAGAATGGGTTTCCAGTTAAACCGCAAGACGCTGAGGGGGAGATAAATACAGTAGACCCATCAACCCGCCGTGTAACGACTAAGGATGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006996 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009643 GO:0009657 GO:0009658 GO:0009893 GO:0009987 GO:0010109 GO:0015075 GO:0015318 GO:0016020 GO:0016043 GO:0019222 GO:0022857 GO:0022890 GO:0031323 GO:0031325 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065007 GO:0071840 GO:0098655 GO:1905157

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger TrkA_N

Protein Analysis

819

Amino Acids

88.89

Weight (kDa)

5.24

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	126 - 507	1.1e-66	Sodium/hydrogen exchanger, transmembrane
TrkA_N	PF02254	539 - 663	2.1e-15	TrkA-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01790 AT1G01790 AT4G04850 AT4G04850
fragaria_vesca	FvH4_2g11000
malus_domestica	MD05G1050600.v1.1 MD10G1058200.v1.1
prunus_persica	Prupe.8G077000_v2.0.a1 Prupe.8G077000_v2.0.a1
pyrus_communis	pycom05g04260 pycom05g04270 pycom10g04490
rosa_chinensis	RchiOBHm_Chr6g0269141 RchiOBHm_Chr6g0269211 RchiOBHm_Chr7g0201951
rosa_laevigata	RLG00000017131
rosa_multiflora	Rmu_co8385553.1_g000001 Rmu_sc0005353.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238290 Rroxscaffold_7G00198940
rosa_rugosa	Rorug05G0148000 Rorug05G0148100 Rorug06G0046600 Rorug06G0046600
rosa_samantha	Rh4DG004100 Rh6AG166300 Rh6BG171900 Rh6CG164800 Rh6CG165400 Rh6DG156300 Rh6DG156400 Rh6DG157000 Rh7AG286500
rosa_wichuraiana	Rw6G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1958, 2152
AatII	GACGTC	1 cut(s)	1244
Acc36I	ACCTGC	2 cut(s)	1958, 2152
AccB7I	CCANNNNNTGG	1 cut(s)	1105
AccI	GTMKAC	1 cut(s)	2418
AccIII	TCCGGA	1 cut(s)	1167
AciI	CCGC	5 cut(s)	443, 914, 1298, 2387, 2431
AclWI	GGATC	2 cut(s)	1727, 1798
AcoI	YGGCCR	3 cut(s)	277, 929, 1274
AcsI	RAATTY	8 cut(s)	199, 495, 578, 672, 1011, 1162, 1594, 2340
AcuI	CTGAAG	2 cut(s)	1665, 1961
AcyI	GRCGYC	1 cut(s)	1241
AfaI	GTAC	6 cut(s)	167, 237, 453, 780, 870, 1853
AfeI	AGCGCT	1 cut(s)	325
AfiI	CCNNNNNNNGG	9 cut(s)	70, 428, 653, 1105, 1191, 1202, 1349, 1498, 1887
AjiI	CACGTC	2 cut(s)	560, 1796
AjnI	CCWGG	2 cut(s)	274, 1644
AloI	GAACNNNNNNTCC	2 cut(s)	984, 1016
Alw21I	GWGCWC	3 cut(s)	1043, 1147, 1933
Alw26I	GTCTC	2 cut(s)	1398, 1994
AlwI	GGATC	2 cut(s)	1727, 1798
AlwNI	CAGNNNCTG	1 cut(s)	1079
Aor13HI	TCCGGA	1 cut(s)	1167
Aor51HI	AGCGCT	1 cut(s)	325
AoxI	GGCC	8 cut(s)	277, 698, 929, 1193, 1274, 1339, 1642, 1709
ApeKI	GCWGC	7 cut(s)	749, 784, 1255, 1538, 1541, 2011, 2098
ApoI	RAATTY	8 cut(s)	199, 495, 578, 672, 1011, 1162, 1594, 2340
Asp700I	GAANNNNTTC	1 cut(s)	2036
AspLEI	GCGC	2 cut(s)	144, 326
AspS9I	GGNCC	5 cut(s)	1340, 1642, 1648, 1710, 1936
AsuHPI	GGTGA	5 cut(s)	815, 1087, 1603, 2176, 2345
AsuNHI	GCTAGC	2 cut(s)	416, 1150
AvaII	GGWCC	2 cut(s)	1648, 1936
BalI	TGGCCA	2 cut(s)	279, 931
BanII	GRGCYC	4 cut(s)	65, 1043, 1933, 2021
BauI	CACGAG	1 cut(s)	1344
BbsI	GAAGAC	1 cut(s)	2226
Bbv12I	GWGCWC	3 cut(s)	1043, 1147, 1933
BbvCI	CCTCAGC	2 cut(s)	769, 2397
BbvI	GCAGC	7 cut(s)	736, 796, 1267, 1525, 1528, 2023, 2085
BccI	CCATC	8 cut(s)	285, 529, 1685, 1701, 1744, 1781, 2324, 2431
BceAI	ACGGC	2 cut(s)	1865, 2418
BciT130I	CCWGG	2 cut(s)	276, 1646
BciVI	GTATCC	2 cut(s)	32, 834
BclI	TGATCA	1 cut(s)	2131
BcoDI	GTCTC	2 cut(s)	1398, 1994
BfaI	CTAG	4 cut(s)	417, 962, 1151, 1755
BfmI	CTRYAG	2 cut(s)	782, 1233
BfoI	RGCGCY	1 cut(s)	327
BfuAI	ACCTGC	2 cut(s)	1958, 2152
BfuI	GTATCC	2 cut(s)	32, 834
BglII	AGATCT	1 cut(s)	1954
BisI	GCNGC	7 cut(s)	750, 785, 1256, 1539, 1542, 2012, 2099
BlsI	GCNGC	7 cut(s)	751, 786, 1257, 1540, 1543, 2013, 2100
Bme1390I	CCNGG	2 cut(s)	276, 1646
Bme18I	GGWCC	2 cut(s)	1648, 1936
BmgBI	CACGTC	2 cut(s)	560, 1796
BmgT120I	GGNCC	5 cut(s)	1340, 1642, 1648, 1710, 1936
BmrFI	CCNGG	2 cut(s)	276, 1646
BmsI	GCATC	3 cut(s)	115, 1867, 1969
BmtI	GCTAGC	2 cut(s)	420, 1154
BpiI	GAAGAC	1 cut(s)	2226
BpmI	CTGGAG	1 cut(s)	1161
Bpu10I	CCTNAGC	2 cut(s)	769, 2397
BpuEI	CTTGAG	4 cut(s)	679, 1380, 1478, 2091
BsaBI	GATNNNNATC	2 cut(s)	1310, 1731
BsaHI	GRCGYC	1 cut(s)	1241
BsaJI	CCNNGG	1 cut(s)	2091
BsaWI	WCCGGW	1 cut(s)	1167
Bsc4I	CCNNNNNNNGG	9 cut(s)	70, 428, 653, 1105, 1191, 1202, 1349, 1498, 1887
Bse1I	ACTGG	2 cut(s)	280, 2378
Bse3DI	GCAATG	2 cut(s)	1511, 2156
Bse8I	GATNNNNATC	2 cut(s)	1310, 1731
BseAI	TCCGGA	1 cut(s)	1167
BseBI	CCWGG	2 cut(s)	276, 1646
BseDI	CCNNGG	1 cut(s)	2091
BseGI	GGATG	6 cut(s)	106, 1712, 1792, 2195, 2335, 2455
BseJI	GATNNNNATC	2 cut(s)	1310, 1731
BseLI	CCNNNNNNNGG	9 cut(s)	70, 428, 653, 1105, 1191, 1202, 1349, 1498, 1887
BseMI	GCAATG	2 cut(s)	1511, 2156
BseMII	CTCAG	4 cut(s)	617, 783, 1056, 2388
BseNI	ACTGG	2 cut(s)	280, 2378
BseXI	GCAGC	7 cut(s)	736, 796, 1267, 1525, 1528, 2023, 2085
BseYI	CCCAGC	4 cut(s)	970, 1079, 1098, 2014
BsgI	GTGCAG	1 cut(s)	2016
BshFI	GGCC	8 cut(s)	279, 700, 931, 1195, 1276, 1341, 1644, 1711
BsiHKAI	GWGCWC	3 cut(s)	1043, 1147, 1933
BsiSI	CCGG	1 cut(s)	1168
BslFI	GGGAC	3 cut(s)	987, 1096, 1252
BslI	CCNNNNNNNGG	9 cut(s)	70, 428, 653, 1105, 1191, 1202, 1349, 1498, 1887
BsmAI	GTCTC	2 cut(s)	1398, 1994
BsmFI	GGGAC	3 cut(s)	987, 1096, 1252
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	8 cut(s)	279, 700, 931, 1195, 1276, 1341, 1644, 1711
Bsp1286I	GDGCHC	5 cut(s)	65, 1043, 1147, 1933, 2021
Bsp13I	TCCGGA	1 cut(s)	1167
Bsp1407I	TGTACA	2 cut(s)	235, 1851
Bsp143I	GATC	7 cut(s)	405, 703, 1726, 1732, 1790, 1954, 2131
Bsp19I	CCATGG	1 cut(s)	2091
BspACI	CCGC	5 cut(s)	443, 914, 1298, 2387, 2431
BspANI	GGCC	8 cut(s)	279, 700, 931, 1195, 1276, 1341, 1644, 1711
BspCNI	CTCAG	4 cut(s)	616, 782, 1055, 2389
BspEI	TCCGGA	1 cut(s)	1167
BspMAI	CTGCAG	1 cut(s)	786
BspMI	ACCTGC	2 cut(s)	1958, 2152
BspOI	GCTAGC	2 cut(s)	420, 1154
BspPI	GGATC	2 cut(s)	1727, 1798
BspQI	GCTCTTC	1 cut(s)	1528
BsrDI	GCAATG	2 cut(s)	1511, 2156
BsrGI	TGTACA	2 cut(s)	235, 1851
BsrI	ACTGG	2 cut(s)	280, 2378
BssECI	CCNNGG	1 cut(s)	2091
BssMI	GATC	7 cut(s)	405, 703, 1726, 1732, 1790, 1954, 2131
BssNI	GRCGYC	1 cut(s)	1241
BssSI	CACGAG	1 cut(s)	1344
BssT1I	CCWWGG	1 cut(s)	2091
Bst2BI	CACGAG	1 cut(s)	1344
Bst2UI	CCWGG	2 cut(s)	276, 1646
Bst4CI	ACNGT	8 cut(s)	96, 382, 923, 1075, 2303, 2316, 2416, 2457
Bst6I	CTCTTC	1 cut(s)	1528
BstACI	GRCGYC	1 cut(s)	1241
BstAPI	GCANNNNNTGC	3 cut(s)	581, 1055, 1979
BstAUI	TGTACA	2 cut(s)	235, 1851
BstC8I	GCNNGC	6 cut(s)	76, 245, 322, 418, 1152, 2103
BstDSI	CCRYGG	1 cut(s)	2091
BstF5I	GGATG	6 cut(s)	106, 1712, 1792, 2195, 2335, 2455
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	144, 326
BstKTI	GATC	7 cut(s)	408, 706, 1729, 1735, 1793, 1957, 2134
BstMAI	GTCTC	2 cut(s)	1398, 1994
BstMBI	GATC	7 cut(s)	405, 703, 1726, 1732, 1790, 1954, 2131
BstMWI	GCNNNNNNNGC	9 cut(s)	84, 581, 632, 1055, 1136, 1151, 1282, 1447, 1979
BstNI	CCWGG	2 cut(s)	276, 1646
BstSCI	CCNGG	2 cut(s)	274, 1644
BstSFI	CTRYAG	2 cut(s)	782, 1233
BstV1I	GCAGC	7 cut(s)	736, 796, 1267, 1525, 1528, 2023, 2085
BstV2I	GAAGAC	1 cut(s)	2226
BstX2I	RGATCY	1 cut(s)	1954
BstXI	CCANNNNNNTGG	3 cut(s)	275, 1675, 1933
BstYI	RGATCY	1 cut(s)	1954
BsuI	GTATCC	2 cut(s)	32, 834
BsuRI	GGCC	8 cut(s)	279, 700, 931, 1195, 1276, 1341, 1644, 1711
BtgI	CCRYGG	1 cut(s)	2091
BtrI	CACGTC	2 cut(s)	560, 1796
BtsCI	GGATG	6 cut(s)	106, 1712, 1792, 2195, 2335, 2455
BtsI	GCAGTG	3 cut(s)	238, 1145, 1854
BtsIMutI	CAGTG	7 cut(s)	18, 238, 1080, 1120, 1145, 1854, 2308
BveI	ACCTGC	2 cut(s)	1958, 2152
Cac8I	GCNNGC	6 cut(s)	76, 245, 322, 418, 1152, 2103
CaiI	CAGNNNCTG	1 cut(s)	1079
CfoI	GCGC	2 cut(s)	144, 326
Cfr13I	GGNCC	5 cut(s)	1340, 1642, 1648, 1710, 1936
CseI	GACGC	2 cut(s)	1327, 2402
Csp6I	GTAC	6 cut(s)	166, 236, 452, 779, 869, 1852
CviAII	CATG	5 cut(s)	592, 2092, 2229, 2297, 2348
CviQI	GTAC	6 cut(s)	166, 236, 452, 779, 869, 1852
DpnI	GATC	7 cut(s)	407, 705, 1728, 1734, 1792, 1956, 2133
DpnII	GATC	7 cut(s)	405, 703, 1726, 1732, 1790, 1954, 2131
DraI	TTTAAA	1 cut(s)	954
EaeI	YGGCCR	3 cut(s)	277, 929, 1274
Eam1104I	CTCTTC	1 cut(s)	1528
EarI	CTCTTC	1 cut(s)	1528
Ecl136II	GAGCTC	2 cut(s)	1041, 1931
Eco130I	CCWWGG	1 cut(s)	2091
Eco147I	AGGCCT	1 cut(s)	700
Eco24I	GRGCYC	4 cut(s)	65, 1043, 1933, 2021
Eco47I	GGWCC	2 cut(s)	1648, 1936
Eco47III	AGCGCT	1 cut(s)	325
Eco53kI	GAGCTC	2 cut(s)	1041, 1931
Eco57I	CTGAAG	2 cut(s)	1665, 1961
EcoICRI	GAGCTC	2 cut(s)	1041, 1931
EcoO109I	RGGNCCY	2 cut(s)	1340, 1648
EcoRII	CCWGG	2 cut(s)	274, 1644
EcoT14I	CCWWGG	1 cut(s)	2091
EcoT38I	GRGCYC	4 cut(s)	65, 1043, 1933, 2021
ErhI	CCWWGG	1 cut(s)	2091
FaeI	CATG	5 cut(s)	595, 2095, 2232, 2300, 2351
FalI	AAGNNNNNCTT	2 cut(s)	1751, 1783
FaqI	GGGAC	3 cut(s)	987, 1096, 1252
FatI	CATG	5 cut(s)	591, 2091, 2228, 2296, 2347
FauI	CCCGC	3 cut(s)	436, 1291, 2438
FauNDI	CATATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	2131
FblI	GTMKAC	1 cut(s)	2418
Fnu4HI	GCNGC	7 cut(s)	750, 785, 1256, 1539, 1542, 2012, 2099
FokI	GGATG	5 cut(s)	93, 1719, 1799, 2182, 2342
FriOI	GRGCYC	4 cut(s)	65, 1043, 1933, 2021
Fsp4HI	GCNGC	7 cut(s)	750, 785, 1256, 1539, 1542, 2012, 2099
FspBI	CTAG	4 cut(s)	417, 962, 1151, 1755
GlaI	GCGC	2 cut(s)	143, 325
GluI	GCNGC	7 cut(s)	750, 785, 1256, 1539, 1542, 2012, 2099
GsaI	CCCAGC	4 cut(s)	974, 1083, 1102, 2018
GsuI	CTGGAG	1 cut(s)	1161
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	8 cut(s)	279, 700, 931, 1195, 1276, 1341, 1644, 1711
HapII	CCGG	1 cut(s)	1168
HgaI	GACGC	2 cut(s)	1327, 2402
HhaI	GCGC	2 cut(s)	144, 326
Hin1I	GRCGYC	1 cut(s)	1241
Hin1II	CATG	5 cut(s)	595, 2095, 2232, 2300, 2351
Hin6I	GCGC	2 cut(s)	142, 324
HinP1I	GCGC	2 cut(s)	142, 324
HindIII	AAGCTT	1 cut(s)	2024
HinfI	GANTC	7 cut(s)	8, 472, 478, 514, 1353, 1697, 2087
HpaII	CCGG	1 cut(s)	1168
HphI	GGTGA	5 cut(s)	815, 1087, 1603, 2176, 2345
Hpy166II	GTNNAC	9 cut(s)	238, 806, 1610, 1668, 1854, 2062, 2239, 2306, 2419
Hpy188I	TCNGA	8 cut(s)	363, 477, 505, 719, 1045, 1959, 2053, 2218
Hpy8I	GTNNAC	9 cut(s)	238, 806, 1610, 1668, 1854, 2062, 2239, 2306, 2419
Hpy99I	CGWCG	1 cut(s)	2269
HpyAV	CCTTC	4 cut(s)	595, 937, 1741, 1917
HpyCH4III	ACNGT	8 cut(s)	96, 382, 923, 1075, 2303, 2316, 2416, 2457
HpyCH4IV	ACGT	6 cut(s)	365, 559, 680, 1241, 1795, 2267
HpyF10VI	GCNNNNNNNGC	9 cut(s)	84, 581, 632, 1055, 1136, 1151, 1282, 1447, 1979
HpySE526I	ACGT	6 cut(s)	365, 559, 680, 1241, 1795, 2267
Hsp92I	GRCGYC	1 cut(s)	1241
Hsp92II	CATG	5 cut(s)	595, 2095, 2232, 2300, 2351
HspAI	GCGC	2 cut(s)	142, 324
Kpn2I	TCCGGA	1 cut(s)	1167
Ksp22I	TGATCA	1 cut(s)	2131
Kzo9I	GATC	7 cut(s)	405, 703, 1726, 1732, 1790, 1954, 2131
LguI	GCTCTTC	1 cut(s)	1528
LmnI	GCTCC	5 cut(s)	83, 1038, 1127, 1142, 2095
Lsp1109I	GCAGC	7 cut(s)	736, 796, 1267, 1525, 1528, 2023, 2085
LweI	GCATC	3 cut(s)	115, 1867, 1969
MaeI	CTAG	4 cut(s)	417, 962, 1151, 1755
MaeII	ACGT	6 cut(s)	365, 559, 680, 1241, 1795, 2267
MaeIII	GTNAC	7 cut(s)	13, 128, 376, 1093, 1228, 2351, 2437
MalI	GATC	7 cut(s)	407, 705, 1728, 1734, 1792, 1956, 2133
MboI	GATC	7 cut(s)	405, 703, 1726, 1732, 1790, 1954, 2131
MboII	GAAGA	8 cut(s)	210, 427, 756, 1542, 1545, 2060, 2231, 2348
MfeI	CAATTG	1 cut(s)	1872
MflI	RGATCY	1 cut(s)	1954
MhlI	GDGCHC	5 cut(s)	65, 1043, 1147, 1933, 2021
MlsI	TGGCCA	2 cut(s)	279, 931
MluNI	TGGCCA	2 cut(s)	279, 931
MlyI	GAGTC	2 cut(s)	17, 1347
MmeI	TCCRAC	2 cut(s)	1330, 2335
Mox20I	TGGCCA	2 cut(s)	279, 931
MroI	TCCGGA	1 cut(s)	1167
MroXI	GAANNNNTTC	1 cut(s)	2036
MscI	TGGCCA	2 cut(s)	279, 931
MseI	TTAA	9 cut(s)	224, 599, 690, 953, 1464, 1505, 1518, 2180, 2382
MslI	CAYNNNNRTG	3 cut(s)	97, 2301, 2328
Msp20I	TGGCCA	2 cut(s)	279, 931
MspA1I	CMGCKG	1 cut(s)	2014
MspI	CCGG	1 cut(s)	1168
MspR9I	CCNGG	2 cut(s)	276, 1646
MunI	CAATTG	1 cut(s)	1872
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	2 cut(s)	276, 1646
MwoI	GCNNNNNNNGC	9 cut(s)	84, 581, 632, 1055, 1136, 1151, 1282, 1447, 1979
NcoI	CCATGG	1 cut(s)	2091
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	7 cut(s)	405, 703, 1726, 1732, 1790, 1954, 2131
NheI	GCTAGC	2 cut(s)	416, 1150
NlaIII	CATG	5 cut(s)	595, 2095, 2232, 2300, 2351
NmeAIII	GCCGAG	1 cut(s)	1743
NmuCI	GTSAC	3 cut(s)	13, 376, 1093
PaqCI	CACCTGC	2 cut(s)	1958, 2152
PceI	AGGCCT	1 cut(s)	700
PciSI	GCTCTTC	1 cut(s)	1528
PctI	GAATGC	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	2036
PfeI	GAWTC	5 cut(s)	472, 478, 514, 1697, 2087
PflFI	GACNNNGTC	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	1105
PkrI	GCNGC	7 cut(s)	751, 786, 1257, 1540, 1543, 2013, 2100
PleI	GAGTC	2 cut(s)	16, 1347
PpsI	GAGTC	2 cut(s)	16, 1347
PpuMI	RGGWCCY	1 cut(s)	1648
Psp124BI	GAGCTC	2 cut(s)	1043, 1933
Psp5II	RGGWCCY	1 cut(s)	1648
Psp6I	CCWGG	2 cut(s)	274, 1644
PspFI	CCCAGC	4 cut(s)	970, 1079, 1098, 2014
PspGI	CCWGG	2 cut(s)	274, 1644
PspPI	GGNCC	5 cut(s)	1340, 1642, 1648, 1710, 1936
PspPPI	RGGWCCY	1 cut(s)	1648
PstI	CTGCAG	1 cut(s)	786
PstNI	CAGNNNCTG	1 cut(s)	1079
PsuI	RGATCY	1 cut(s)	1954
PsyI	GACNNNGTC	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	2014
RsaI	GTAC	6 cut(s)	167, 237, 453, 780, 870, 1853
RsaNI	GTAC	6 cut(s)	166, 236, 452, 779, 869, 1852
RseI	CAYNNNNRTG	3 cut(s)	97, 2301, 2328
SacI	GAGCTC	2 cut(s)	1043, 1933
SapI	GCTCTTC	1 cut(s)	1528
SaqAI	TTAA	9 cut(s)	224, 599, 690, 953, 1464, 1505, 1518, 2180, 2382
SatI	GCNGC	7 cut(s)	750, 785, 1256, 1539, 1542, 2012, 2099
Sau3AI	GATC	7 cut(s)	405, 703, 1726, 1732, 1790, 1954, 2131
Sau96I	GGNCC	5 cut(s)	1340, 1642, 1648, 1710, 1936
SchI	GAGTC	2 cut(s)	17, 1347
ScrFI	CCNGG	2 cut(s)	276, 1646
SduI	GDGCHC	5 cut(s)	65, 1043, 1147, 1933, 2021
SfaNI	GCATC	3 cut(s)	115, 1867, 1969
SfcI	CTRYAG	2 cut(s)	782, 1233
SinI	GGWCC	2 cut(s)	1648, 1936
SmiMI	CAYNNNNRTG	3 cut(s)	97, 2301, 2328
SmlI	CTYRAG	4 cut(s)	694, 1395, 1457, 2106
SmoI	CTYRAG	4 cut(s)	694, 1395, 1457, 2106
SseBI	AGGCCT	1 cut(s)	700
SsiI	CCGC	5 cut(s)	443, 914, 1298, 2387, 2431
SspMI	CTAG	4 cut(s)	417, 962, 1151, 1755
SstI	GAGCTC	2 cut(s)	1043, 1933
StuI	AGGCCT	1 cut(s)	700
StyD4I	CCNGG	2 cut(s)	274, 1644
StyI	CCWWGG	1 cut(s)	2091
TaaI	ACNGT	8 cut(s)	96, 382, 923, 1075, 2303, 2316, 2416, 2457
TaiI	ACGT	6 cut(s)	368, 562, 683, 1244, 1798, 2270
TaqI	TCGA	3 cut(s)	1267, 1894, 2264
TatI	WGTACW	5 cut(s)	165, 235, 451, 778, 1851
TfiI	GAWTC	5 cut(s)	472, 478, 514, 1697, 2087
Tru1I	TTAA	9 cut(s)	224, 599, 690, 953, 1464, 1505, 1518, 2180, 2382
Tru9I	TTAA	9 cut(s)	224, 599, 690, 953, 1464, 1505, 1518, 2180, 2382
TscAI	CASTG	7 cut(s)	18, 245, 1080, 1120, 1152, 1861, 2308
TseFI	GTSAC	3 cut(s)	13, 376, 1093
TseI	GCWGC	7 cut(s)	749, 784, 1255, 1538, 1541, 2011, 2098
Tsp45I	GTSAC	3 cut(s)	13, 376, 1093
TspDTI	ATGAA	8 cut(s)	193, 210, 744, 1536, 2193, 2202, 2217, 2301
TspGWI	ACGGA	2 cut(s)	2188, 2342
TspRI	CASTG	7 cut(s)	18, 245, 1080, 1120, 1152, 1861, 2308
Tth111I	GACNNNGTC	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	1105
VpaK11BI	GGWCC	2 cut(s)	1648, 1936
XapI	RAATTY	8 cut(s)	199, 495, 578, 672, 1011, 1162, 1594, 2340
XbaI	TCTAGA	1 cut(s)	1754
XmiI	GTMKAC	1 cut(s)	2418
XmnI	GAANNNNTTC	1 cut(s)	2036
XspI	CTAG	4 cut(s)	417, 962, 1151, 1755
ZraI	GACGTC	1 cut(s)	1242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.