Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003895

Physical Location & Seq

Genomic Coordinates Forward (+)

6160138 .. 6161662

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0046600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGCGATCACAACCAGCAACAACAACATCCTCCTGGTCCTCCTCCACCACCACCTGCTCCTCCTCCTGCTCAACAGCCTTCTAATCAGGGTGTTCCTCCTGCCGCTGCTCAACAGCCTTCTGATCAGGGTGTCCCTCCTCCTCAACAACAACAACCTTCTGCTAGTGCTCCTCCCCCCCAAGAAGGATATCACGCAAACGTCGGCCCTTATCCACCACCGGGATATCCACAGCCAGGATATTCTTCATCACCCCCACCGCCTCAGGGCTACCCACAAGAAGGACATGCCACCAGAGACGCTTATCCACCAGCAGGATATCCCCCACAAGGAAATTTTTCACCTCCAGGCTATCCTCCTCCGGGTTATCCTCCTCAAGGCTACTCTCCCCAGGGATATCCTCCTCAAGGATATCCACCACCAGGATATCCTCCTCAAGGTTATCCACCCCAAGGATATCCTCCTCCCTATCCGGGACAGTACTATGCCGGCCAGCCCACCCGCCCTCCTCCTCAAGCAAGCAGTGCTATGGGACCTATGGGTTGTTGCCAGGCCTGTTTGGCTGCTCTTTGCTGTTGCTGTATGCTGGATTGTTTACTGGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006996 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009643 GO:0009657 GO:0009658 GO:0009893 GO:0009987 GO:0010109 GO:0015075 GO:0015318 GO:0016020 GO:0016043 GO:0019222 GO:0022857 GO:0022890 GO:0031323 GO:0031325 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065007 GO:0071840 GO:0098655 GO:1905157

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger TrkA_N

Protein Analysis

202

Amino Acids

21.04

Weight (kDa)

4.86

Isoelectric Point (pI)

96.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01790 AT1G01790 AT4G04850 AT4G04850
fragaria_vesca	FvH4_2g11000
malus_domestica	MD05G1050600.v1.1 MD10G1058200.v1.1
prunus_persica	Prupe.8G077000_v2.0.a1 Prupe.8G077000_v2.0.a1
pyrus_communis	pycom05g04260 pycom05g04270 pycom10g04490
rosa_chinensis	RchiOBHm_Chr6g0269141 RchiOBHm_Chr6g0269211 RchiOBHm_Chr7g0201951
rosa_laevigata	RLG00000017131
rosa_multiflora	Rmu_co8385553.1_g000001 Rmu_sc0005353.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238290 Rroxscaffold_7G00198940
rosa_rugosa	Rorug05G0148000 Rorug05G0148100 Rorug06G0046600 Rorug06G0046600
rosa_samantha	Rh4DG004100 Rh6AG166300 Rh6BG171900 Rh6CG164800 Rh6CG165400 Rh6DG156300 Rh6DG156400 Rh6DG157000 Rh7AG286500
rosa_wichuraiana	Rw6G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	64
AciI	CCGC	3 cut(s)	105, 260, 502
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	334
AfaI	GTAC	1 cut(s)	482
AjnI	CCWGG	6 cut(s)	34, 235, 346, 390, 421, 549
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	291
AoxI	GGCC	3 cut(s)	205, 490, 552
ApeKI	GCWGC	2 cut(s)	107, 563
ApoI	RAATTY	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	337
AspS9I	GGNCC	3 cut(s)	38, 206, 533
AsuC2I	CCSGG	3 cut(s)	222, 363, 474
AsuHPI	GGTGA	2 cut(s)	243, 333
AvaII	GGWCC	2 cut(s)	38, 533
AxyI	CCTNAGG	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	94, 550
BciT130I	CCWGG	6 cut(s)	36, 237, 348, 392, 423, 551
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	3 cut(s)	222, 363, 474
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	64
BglI	GCCNNNNNGGC	1 cut(s)	560
BisI	GCNGC	3 cut(s)	105, 108, 564
BlsI	GCNGC	3 cut(s)	106, 109, 565
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	9 cut(s)	36, 222, 237, 348, 363, 392, 423, 474, 551
Bme18I	GGWCC	2 cut(s)	38, 533
BmgT120I	GGNCC	3 cut(s)	38, 206, 533
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	9 cut(s)	36, 222, 237, 348, 363, 392, 423, 474, 551
BpmI	CTGGAG	1 cut(s)	330
BpuEI	CTTGAG	4 cut(s)	360, 390, 420, 498
BpuMI	CCSGG	3 cut(s)	222, 363, 474
BsaJI	CCNNGG	3 cut(s)	390, 391, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	1 cut(s)	603
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	6 cut(s)	36, 237, 348, 392, 423, 551
BseDI	CCNNGG	3 cut(s)	390, 391, 451
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	94, 550
BshFI	GGCC	3 cut(s)	207, 492, 554
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	4 cut(s)	221, 362, 473, 489
BslFI	GGGAC	3 cut(s)	119, 489, 546
BsmAI	GTCTC	1 cut(s)	291
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	3 cut(s)	119, 489, 546
BsnI	GGCC	3 cut(s)	207, 492, 554
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	7, 124
BspACI	CCGC	3 cut(s)	105, 260, 502
BspANI	GGCC	3 cut(s)	207, 492, 554
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	534
BspMI	ACCTGC	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	603
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	3 cut(s)	390, 391, 451
BssMI	GATC	2 cut(s)	7, 124
BssT1I	CCWWGG	1 cut(s)	451
Bst2UI	CCWGG	6 cut(s)	36, 237, 348, 392, 423, 551
Bst4CI	ACNGT	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstC8I	GCNNGC	3 cut(s)	490, 494, 520
BstDEI	CTNAG	1 cut(s)	264
BstENI	CCTNNNNNAGG	3 cut(s)	375, 405, 435
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	10, 127
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	2 cut(s)	7, 124
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 560
BstNI	CCWGG	6 cut(s)	36, 237, 348, 392, 423, 551
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	9 cut(s)	34, 220, 235, 346, 361, 390, 421, 472, 549
BstV1I	GCAGC	2 cut(s)	94, 550
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	207, 492, 554
BtsCI	GGATG	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	529
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	490, 494, 520
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	38, 206, 533
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	1 cut(s)	287
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	9, 126
DpnII	GATC	2 cut(s)	7, 124
EaeI	YGGCCR	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	451
Eco147I	AGGCCT	1 cut(s)	554
Eco32I	GATATC	7 cut(s)	191, 227, 320, 398, 413, 428, 458
Eco47I	GGWCC	2 cut(s)	38, 533
Eco81I	CCTNAGG	1 cut(s)	264
EcoNI	CCTNNNNNAGG	3 cut(s)	375, 405, 435
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRII	CCWGG	6 cut(s)	34, 235, 346, 390, 421, 549
EcoRV	GATATC	7 cut(s)	191, 227, 320, 398, 413, 428, 458
EcoT14I	CCWWGG	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	1 cut(s)	290
FaiI	YATR	6 cut(s)	288, 486, 530, 539, 584, 605
FaqI	GGGAC	3 cut(s)	119, 489, 546
FatI	CATG	1 cut(s)	286
FauI	CCCGC	1 cut(s)	509
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	105, 108, 564
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	3 cut(s)	105, 108, 564
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	3 cut(s)	105, 108, 564
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	207, 492, 554
HapII	CCGG	4 cut(s)	221, 362, 473, 489
HgaI	GACGC	1 cut(s)	308
Hin1II	CATG	1 cut(s)	290
HpaII	CCGG	4 cut(s)	221, 362, 473, 489
HphI	GGTGA	2 cut(s)	243, 333
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	596
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	5 cut(s)	90, 129, 168, 179, 275
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 560
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	290
KroI	GCCGGC	1 cut(s)	488
KroNI	GCCGGC	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	7, 124
LmnI	GCTCC	2 cut(s)	64, 175
Lsp1109I	GCAGC	2 cut(s)	94, 550
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	201
MalI	GATC	2 cut(s)	9, 126
MboI	GATC	2 cut(s)	7, 124
MboII	GAAGA	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	334
MroNI	GCCGGC	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	337
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	4 cut(s)	221, 362, 473, 489
MspR9I	CCNGG	9 cut(s)	36, 222, 237, 348, 363, 392, 423, 474, 551
MvaI	CCWGG	6 cut(s)	36, 237, 348, 392, 423, 551
MwoI	GCNNNNNNNGC	2 cut(s)	524, 560
NaeI	GCCGGC	1 cut(s)	490
NciI	CCSGG	3 cut(s)	222, 363, 474
NdeII	GATC	2 cut(s)	7, 124
NgoMIV	GCCGGC	1 cut(s)	488
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	1 cut(s)	534
NspI	RCATGY	1 cut(s)	290
PaqCI	CACCTGC	1 cut(s)	64
PasI	CCCWGGG	1 cut(s)	391
PceI	AGGCCT	1 cut(s)	554
PdiI	GCCGGC	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	337
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	3 cut(s)	106, 109, 565
PpuMI	RGGWCCY	1 cut(s)	533
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	6 cut(s)	34, 235, 346, 390, 421, 549
PspGI	CCWGG	6 cut(s)	34, 235, 346, 390, 421, 549
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	3 cut(s)	38, 206, 533
PspPPI	RGGWCCY	1 cut(s)	533
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SatI	GCNGC	3 cut(s)	105, 108, 564
Sau3AI	GATC	2 cut(s)	7, 124
Sau96I	GGNCC	3 cut(s)	38, 206, 533
ScaI	AGTACT	1 cut(s)	482
ScrFI	CCNGG	9 cut(s)	36, 222, 237, 348, 363, 392, 423, 474, 551
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	6 cut(s)	58, 160, 204, 346, 442, 538
SinI	GGWCC	2 cut(s)	38, 533
SmlI	CTYRAG	4 cut(s)	375, 405, 435, 513
SmoI	CTYRAG	4 cut(s)	375, 405, 435, 513
Sse9I	AATT	1 cut(s)	334
SseBI	AGGCCT	1 cut(s)	554
SsiI	CCGC	3 cut(s)	105, 260, 502
SspMI	CTAG	1 cut(s)	165
StuI	AGGCCT	1 cut(s)	554
StyD4I	CCNGG	9 cut(s)	34, 220, 235, 346, 361, 390, 421, 472, 549
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	1 cut(s)	204
TasI	AATT	1 cut(s)	334
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	107
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	2 cut(s)	107, 563
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	2 cut(s)	38, 533
XagI	CCTNNNNNAGG	3 cut(s)	375, 405, 435
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	1 cut(s)	165
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.