Rroxscaffold_3G00238290

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
26433777 .. 26439065
5289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238290.1

Sequence Viewer

Length: 180 bp
ATGGAGGAGATTATATATAGGTTGGTCATGCTGGAATTTTCAGCCACACGAAGTATTCTCTTGCATCTAATTCAACTTACAATGTGGAAGAGGCTGGTGATCCGTAAGGCGAAATGGAGGAATGGTACGAAGATTACCCAAAATGAGTGGCCTGAAAATAGTGGTGACCGAGCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

7.14

Weight (kDa)

10.5

Isoelectric Point (pI)

26.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 127
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 175
AlwI GGATC 1 cut(s) 94
AoxI GGCC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 109, 176
BanII GRGCYC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 175
BmsI GCATC 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
BseRI GAGGAG 1 cut(s) 20
BshFI GGCC 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 175
BsnI GGCC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 99
BspANI GGCC 1 cut(s) 151
BspPI GGATC 1 cut(s) 94
BssMI GATC 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 83
BstEII GGTNACC 1 cut(s) 164
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstPI GGTNACC 1 cut(s) 164
BsuRI GGCC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 126
CspCI CAANNNNNGTGG 2 cut(s) 128, 163
CviAII CATG 1 cut(s) 28
CviJI RGCY 4 cut(s) 44, 94, 151, 173
CviKI_1 RGCY 4 cut(s) 44, 94, 151, 173
CviQI GTAC 1 cut(s) 126
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 173
Eco91I GGTNACC 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 1 cut(s) 31
FaiI YATR 4 cut(s) 14, 16, 18, 29
FatI CATG 1 cut(s) 27
FriOI GRGCYC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 151
Hin1II CATG 1 cut(s) 31
HphI GGTGA 2 cut(s) 109, 176
HpyCH4V TGCA 1 cut(s) 64
Hsp92II CATG 1 cut(s) 31
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 17, 80, 165
LweI GCATC 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 100, 142
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 2 cut(s) 35, 69
MnlI CCTC 2 cut(s) 84, 111
NdeII GATC 1 cut(s) 99
NlaIII CATG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 175
PspEI GGTNACC 1 cut(s) 164
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SacI GAGCTC 1 cut(s) 175
Sau3AI GATC 1 cut(s) 99
SduI GDGCHC 1 cut(s) 175
SetI ASST 2 cut(s) 23, 175
SfaNI GCATC 1 cut(s) 73
SgeI CNNG 6 cut(s) 40, 44, 60, 73, 107, 164
Sse9I AATT 2 cut(s) 35, 69
SstI GAGCTC 1 cut(s) 175
TasI AATT 2 cut(s) 35, 69
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 92
XapI RAATTY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.