pycom05g18030

cellular macromolecule catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0005522
Physical Location & Seq
Forward (+)
21093142 .. 21093512
371 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g18030.1

Sequence Viewer

Length: 330 bp
ATGCTAAAAGATTGGGAAGTTATATCGGATTGCAACGTTACAAATTGGTACTTTTCCAGCTCTCCATTAACAATCTATGTCCGAACACCCGATGTTACCGCACTGGGACTTCCAGCTAAGAGTTCGGACATCATTGACGATGTTTGGATTCCCCCACCAATGACTGAAGACGTTAACGGGCAGCCATGTCTCTTCCTTGATGGCACTCGCCTCATGGGCACGAAAACGCTAGCTCAGTATGGCATACAGTCAGGTGCGGATTTATTGTTAGACTGTTTGGTGCGGATCAACGTGACGGGGCCAGACGGTACAATCACTAAGGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

110

Amino Acids

11.92

Weight (kDa)

4.19

Isoelectric Point (pI)

19.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 99, 257, 283
AclI AACGTT 1 cut(s) 36
AclWI GGATC 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 2 cut(s) 50, 310
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 3 cut(s) 60, 116, 233
AluI AGCT 3 cut(s) 60, 116, 233
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 1 cut(s) 293
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 230
BglI GCCNNNNNGGC 1 cut(s) 216
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 300
BmrI ACTGGG 1 cut(s) 113
BmtI GCTAGC 1 cut(s) 233
BmuI ACTGGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 301
BslFI GGGAC 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 1 cut(s) 285
BspACI CCGC 3 cut(s) 99, 257, 283
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 300
BspOI GCTAGC 1 cut(s) 233
BspPI GGATC 1 cut(s) 293
BsrI ACTGG 1 cut(s) 108
BssMI GATC 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 249, 275, 308
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 117, 234, 318
BstKTI GATC 1 cut(s) 288
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 231
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 2 cut(s) 49, 309
CviAII CATG 2 cut(s) 186, 214
CviJI RGCY 5 cut(s) 60, 116, 184, 233, 301
CviKI_1 RGCY 5 cut(s) 60, 116, 184, 233, 301
CviQI GTAC 2 cut(s) 49, 309
DdeI CTNAG 3 cut(s) 117, 234, 318
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 186
FaeI CATG 2 cut(s) 189, 217
FaiI YATR 6 cut(s) 23, 78, 187, 215, 240, 245
FaqI GGGAC 1 cut(s) 120
FatI CATG 2 cut(s) 185, 213
Fnu4HI GCNGC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 182
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 2 cut(s) 189, 217
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 148
HpaI GTTAAC 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 3 cut(s) 28, 83, 127
Hpy8I GTNNAC 1 cut(s) 175
HpyCH4III ACNGT 3 cut(s) 249, 275, 308
HpyCH4IV ACGT 3 cut(s) 36, 171, 291
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 3 cut(s) 117, 234, 318
HpySE526I ACGT 3 cut(s) 36, 171, 291
Hsp92II CATG 2 cut(s) 189, 217
KspAI GTTAAC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 285
LpnPI CCDG 5 cut(s) 70, 89, 126, 237, 315
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 230
MaeII ACGT 3 cut(s) 36, 171, 291
MaeIII GTNAC 3 cut(s) 37, 94, 292
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 2 cut(s) 179, 184
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 1 cut(s) 43
MnlI CCTC 1 cut(s) 221
MseI TTAA 2 cut(s) 68, 174
MslI CAYNNNNRTG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 1 cut(s) 285
NheI GCTAGC 1 cut(s) 229
NlaIII CATG 2 cut(s) 189, 217
NlaIV GGNNCC 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 292
OliI CACNNNNGTG 1 cut(s) 320
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 1 cut(s) 183
Psp1406I AACGTT 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 299
RsaI GTAC 2 cut(s) 50, 310
RsaNI GTAC 2 cut(s) 49, 309
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 2 cut(s) 68, 174
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 1 cut(s) 285
Sau96I GGNCC 1 cut(s) 299
SduI GDGCHC 1 cut(s) 221
SetI ASST 8 cut(s) 39, 62, 118, 174, 235, 256, 294, 324
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 1 cut(s) 43
SsiI CCGC 3 cut(s) 99, 257, 283
SspMI CTAG 1 cut(s) 230
TaaI ACNGT 3 cut(s) 249, 275, 308
TaiI ACGT 3 cut(s) 39, 174, 294
TasI AATT 1 cut(s) 43
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 68, 174
Tru9I TTAA 2 cut(s) 68, 174
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 292
TspRI CASTG 1 cut(s) 108
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.