RLG00000012492

cellular macromolecule catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005522
Physical Location & Seq
Reverse (-)
19257913 .. 19259100
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012492

Sequence Viewer

Length: 1101 bp
ATGCCGATTTATTTACTGTCGAGAGGGAAGAAATTTTGGATTGTTGCGAAAGGTTATGGGTGGGAAGAATTGATTGTGGTGTGTGAATCATATACTGTGGGGGATGTAAAGAAGATGGTTGAGAATTTTTCTCAGGTGAAGAGTGCAGGACTGGTGCTTTTTCGGGGCAAAAATGATTTGGTTTGTCTTGATGATGATGGGAAGCCCCTTGTGTTTTACGATGTAGTAGAGAAATCTACGATTTGGGTACTTGGTTTGGCTGTGAAATTGACCATCAAGATGCCACAGGCTGGAGATGTGGTGACCCTCAGTGCTTATAGGGTCAACACCGTAAAGGACATCAAGTCTTATATATTTGAGAAGATGGGGATCCCATTTAGCAGTCAGAAGCTTTTCTATAGGGGGATTTTTCTTGCTGATGAGGCTGATTCCCTAGATGGCTACGACATGAAAGTTAATTGTGATATTTTTGCAACTTTTGGATCAGGAGATGATGATGAACAAGTTCCAGATGTTGAAAAAATAAAGTTAATTTTCAAGGGAGACTACCATTCGCATGTGTTCAAGATGGAATGCTCAAGTTACGAAGAATCAAAAAGCGAGTTGGATGACGAAGAGTCGGAGGAGGAAACATTTCTATACCGTCATGAAAGATTGCTGAAAGATTGGAAAAATCTTTGGGAGAGCAGTGTTGTTACAAAGTGGTTATTTGTTAGCTCTCAATTAACAATGTTCATTGAGACACCAAACCATAAGAAGGTTGTAATCAAACCTAGCAGTAGAAATGCAGTTCATAACATTTTGTACATGATTCCCAAACAAGCCCTCGACAAAATCAATTGGAAGCCAAGGCTCTTCCTTAATGGTAATGTTCTCCCAGAGCACAAAACCCTGGCTCAGTTGGGTGTTCAGTCAGGTGTGGTTTTATTGTTGGACCGTCTTGTGCAAATTGATGTCACCAGGCCAAATGGTGCAACCATTCATGTGAATATGAACCTTACAAAATCAAAGCTGTCAAGGAGAAAATTGAACAAGAATGTGGTATCCCTATTGGACTACAAAGACTTACTTATGGTGGTGATGAACTCAATGATGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

367

Amino Acids

41.94

Weight (kDa)

7.05

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 90 - 153 1.5e-07 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 290
AclWI GGATC 3 cut(s) 364, 377, 490
AcsI RAATTY 2 cut(s) 32, 124
AfaI GTAC 2 cut(s) 249, 806
AfiI CCNNNNNNNGG 2 cut(s) 290, 757
AgsI TTSAA 4 cut(s) 518, 538, 565, 1030
AhdI GACNNNNNGTC 2 cut(s) 343, 616
AjnI CCWGG 2 cut(s) 891, 959
AluBI AGCT 3 cut(s) 391, 717, 1012
AluI AGCT 3 cut(s) 391, 717, 1012
Alw21I GWGCWC 1 cut(s) 885
Alw26I GTCTC 2 cut(s) 537, 734
AlwI GGATC 3 cut(s) 364, 377, 490
AoxI GGCC 1 cut(s) 962
ApoI RAATTY 2 cut(s) 32, 124
Asp700I GAANNNNTTC 3 cut(s) 392, 504, 633
AspS9I GGNCC 1 cut(s) 934
AsuHPI GGTGA 4 cut(s) 148, 313, 949, 1090
AvaII GGWCC 1 cut(s) 934
BamHI GGATCC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 885
BccI CCATC 6 cut(s) 109, 191, 281, 358, 431, 562
BciT130I CCWGG 2 cut(s) 893, 961
BciVI GTATCC 1 cut(s) 1054
BcoDI GTCTC 2 cut(s) 537, 734
BfaI CTAG 2 cut(s) 434, 774
BfmI CTRYAG 1 cut(s) 397
BfuI GTATCC 1 cut(s) 1054
Bme1390I CCNGG 2 cut(s) 893, 961
Bme18I GGWCC 1 cut(s) 934
BmeRI GACNNNNNGTC 2 cut(s) 343, 616
BmgT120I GGNCC 1 cut(s) 934
BmiI GGNNCC 1 cut(s) 371
BmrFI CCNGG 2 cut(s) 893, 961
BmsI GCATC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 562
BsaBI GATNNNNATC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 848, 891
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 757
Bse1I ACTGG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 368
BseBI CCWGG 2 cut(s) 893, 961
BseDI CCNNGG 2 cut(s) 848, 891
BseGI GGATG 2 cut(s) 109, 613
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 2 cut(s) 290, 757
BseMII CTCAG 3 cut(s) 146, 322, 911
BseNI ACTGG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 638
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 964
BsiHKAI GWGCWC 1 cut(s) 885
BslI CCNNNNNNNGG 2 cut(s) 290, 757
BsmAI GTCTC 2 cut(s) 537, 734
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 1 cut(s) 964
Bsp1286I GDGCHC 1 cut(s) 885
Bsp1407I TGTACA 1 cut(s) 804
Bsp143I GATC 2 cut(s) 369, 482
BspANI GGCC 1 cut(s) 964
BspCNI CTCAG 3 cut(s) 145, 321, 910
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 3 cut(s) 364, 377, 490
BspQI GCTCTTC 1 cut(s) 860
BsrGI TGTACA 1 cut(s) 804
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 848, 891
BssMI GATC 2 cut(s) 369, 482
BssT1I CCWWGG 1 cut(s) 848
Bst2UI CCWGG 2 cut(s) 893, 961
Bst4CI ACNGT 5 cut(s) 18, 97, 331, 644, 938
Bst6I CTCTTC 3 cut(s) 134, 609, 860
BstAUI TGTACA 1 cut(s) 804
BstDEI CTNAG 3 cut(s) 132, 308, 897
BstEII GGTNACC 1 cut(s) 301
BstF5I GGATG 2 cut(s) 109, 613
BstKTI GATC 2 cut(s) 372, 485
BstMAI GTCTC 2 cut(s) 537, 734
BstMBI GATC 2 cut(s) 369, 482
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 2 cut(s) 893, 961
BstNSI RCATGY 1 cut(s) 560
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 891, 959
BstSFI CTRYAG 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuI GTATCC 1 cut(s) 1054
BsuRI GGCC 1 cut(s) 964
BtsCI GGATG 2 cut(s) 109, 613
BtsI GCAGTG 1 cut(s) 694
BtsIMutI CAGTG 2 cut(s) 316, 694
CciI TCATGA 1 cut(s) 646
Cfr13I GGNCC 1 cut(s) 934
Csp6I GTAC 2 cut(s) 248, 805
CviAII CATG 5 cut(s) 448, 557, 647, 808, 983
CviQI GTAC 2 cut(s) 248, 805
DdeI CTNAG 3 cut(s) 132, 308, 897
DpnI GATC 2 cut(s) 371, 484
DpnII GATC 2 cut(s) 369, 482
DriI GACNNNNNGTC 2 cut(s) 343, 616
Eam1104I CTCTTC 3 cut(s) 134, 609, 860
Eam1105I GACNNNNNGTC 2 cut(s) 343, 616
EarI CTCTTC 3 cut(s) 134, 609, 860
Eco130I CCWWGG 1 cut(s) 848
Eco47I GGWCC 1 cut(s) 934
Eco91I GGTNACC 1 cut(s) 301
EcoO65I GGTNACC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 891, 959
EcoT14I CCWWGG 1 cut(s) 848
ErhI CCWWGG 1 cut(s) 848
FaeI CATG 5 cut(s) 451, 560, 650, 811, 986
FalI AAGNNNNNCTT 2 cut(s) 1053, 1085
FatI CATG 5 cut(s) 447, 556, 646, 807, 982
FokI GGATG 2 cut(s) 116, 620
FspBI CTAG 2 cut(s) 434, 774
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 964
Hin1II CATG 5 cut(s) 451, 560, 650, 811, 986
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 5 cut(s) 86, 428, 590, 617, 811
HphI GGTGA 4 cut(s) 148, 313, 949, 1090
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 387, 622
Hpy188III TCNNGA 7 cut(s) 21, 188, 277, 486, 509, 565, 647
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 751
HpyCH4III ACNGT 5 cut(s) 18, 97, 331, 644, 938
HpyCH4V TGCA 5 cut(s) 146, 473, 788, 946, 974
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 3 cut(s) 132, 308, 897
Hsp92II CATG 5 cut(s) 451, 560, 650, 811, 986
Kzo9I GATC 2 cut(s) 369, 482
LguI GCTCTTC 1 cut(s) 860
LweI GCATC 1 cut(s) 270
MaeI CTAG 2 cut(s) 434, 774
MaeIII GTNAC 4 cut(s) 301, 581, 694, 955
MalI GATC 2 cut(s) 371, 484
MboI GATC 2 cut(s) 369, 482
MboII GAAGA 8 cut(s) 40, 77, 124, 151, 373, 599, 626, 847
MfeI CAATTG 1 cut(s) 838
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 885
MlyI GAGTC 1 cut(s) 626
MmeI TCCRAC 3 cut(s) 585, 600, 912
MnlI CCTC 6 cut(s) 17, 317, 415, 616, 619, 836
MroXI GAANNNNTTC 3 cut(s) 392, 504, 633
MseI TTAA 4 cut(s) 456, 530, 725, 861
MslI CAYNNNNRTG 3 cut(s) 278, 555, 983
MspR9I CCNGG 2 cut(s) 893, 961
MunI CAATTG 1 cut(s) 838
Mva1269I GAATGC 1 cut(s) 578
MvaI CCWGG 2 cut(s) 893, 961
MwoI GCNNNNNNNGC 1 cut(s) 422
NdeII GATC 2 cut(s) 369, 482
NlaIII CATG 5 cut(s) 451, 560, 650, 811, 986
NlaIV GGNNCC 1 cut(s) 371
NmuCI GTSAC 2 cut(s) 301, 955
NspI RCATGY 1 cut(s) 560
PagI TCATGA 1 cut(s) 646
PciSI GCTCTTC 1 cut(s) 860
PctI GAATGC 1 cut(s) 578
PdmI GAANNNNTTC 3 cut(s) 392, 504, 633
PfeI GAWTC 4 cut(s) 86, 428, 590, 811
PflMI CCANNNNNTGG 1 cut(s) 290
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
Psp6I CCWGG 2 cut(s) 891, 959
PspEI GGTNACC 1 cut(s) 301
PspGI CCWGG 2 cut(s) 891, 959
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 1 cut(s) 934
PsuI RGATCY 1 cut(s) 369
RsaI GTAC 2 cut(s) 249, 806
RsaNI GTAC 2 cut(s) 248, 805
RseI CAYNNNNRTG 3 cut(s) 278, 555, 983
SapI GCTCTTC 1 cut(s) 860
SaqAI TTAA 4 cut(s) 456, 530, 725, 861
Sau3AI GATC 2 cut(s) 369, 482
Sau96I GGNCC 1 cut(s) 934
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 2 cut(s) 893, 961
SduI GDGCHC 1 cut(s) 885
SetI ASST 9 cut(s) 55, 138, 393, 719, 762, 775, 919, 999, 1014
SfaNI GCATC 1 cut(s) 270
SfcI CTRYAG 1 cut(s) 397
SinI GGWCC 1 cut(s) 934
SmiMI CAYNNNNRTG 3 cut(s) 278, 555, 983
SmlI CTYRAG 1 cut(s) 577
SmoI CTYRAG 1 cut(s) 577
SspMI CTAG 2 cut(s) 434, 774
StyD4I CCNGG 2 cut(s) 891, 959
StyI CCWWGG 1 cut(s) 848
TaaI ACNGT 5 cut(s) 18, 97, 331, 644, 938
TaqI TCGA 2 cut(s) 20, 828
TatI WGTACW 1 cut(s) 804
TfiI GAWTC 4 cut(s) 86, 428, 590, 811
Tru1I TTAA 4 cut(s) 456, 530, 725, 861
Tru9I TTAA 4 cut(s) 456, 530, 725, 861
TscAI CASTG 2 cut(s) 316, 694
TseFI GTSAC 2 cut(s) 301, 955
Tsp45I GTSAC 2 cut(s) 301, 955
TspDTI ATGAA 8 cut(s) 464, 513, 663, 724, 782, 971, 1007, 1097
TspRI CASTG 2 cut(s) 316, 694
Van91I CCANNNNNTGG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 934
XapI RAATTY 2 cut(s) 32, 124
XceI RCATGY 1 cut(s) 560
XmnI GAANNNNTTC 3 cut(s) 392, 504, 633
XspI CTAG 2 cut(s) 434, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.