Rorug06G0188300

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005522
Physical Location & Seq
Forward (+)
30117521 .. 30118438
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0188300.1

Sequence Viewer

Length: 918 bp
ATGTGTATTCCTAAAGACAAAGGAGGTATGGGGTTTAAACACTTACACTCGCACAACTTAGCCATGCTCTCGAAACAGGGTTGGAGACTTCTTTCAAATCCGGATTCTCTTATGGCCAGAGTATTCAAGGCAGTGTACTACCCATTTGGATCGTTCCTCACAGCTGATATGGGTGATCAGCCTTCTTACTCATGGAGGAGTCTGATGGAGGCACGTCCGGTCTTGCAAGCAGGCTTACTGTGGCGCATTGGCAATGGTCAATCTGTTAGAATTTGGGATGATGATTGGATCCCTCAGGTCTCTCACTACTCTTTACCTCGACCCTCGGACTCAGTTTTTGAGACAGTCTCTGACTTGATTAATCATGATCTCTTGGTATGGGATATCCCTGCGCTACACTCTTGTTTTGAACCTTCAGTGGTGGCACAAGTTTTGTCAATCCCTCTGAGCAGGCGCTTTGACAGAGATAAGCCTGCATGGAAACTATATAAGAAAGGTTACTTCTCGGTCAAGTCAGCGTACAAAATAGCTTGCACCTTCTCTCTCGGTAATATATCTGCCTCAACCTCTACTGGGGATCCTTATGGTCCAATATGGAGAGCTTTGTGGAAAGCTCAGGTTCCTAGCAAAGTCGCCATCTCTGGCTGGAGAGCGGTTAACAATCTACTTCCCACACGGACGGCTCTATCCTTGAAGGGTTACACGGGTACCTTACAGTGTGTTATGTGCTCTACTCATGTGGAAACTCTAGAACATTTATTCTGCCACTGTAGTTTGGCGCGAGAGATCCTTGGTGCACCGCCTTTCTCTATTCCTACATCCTCATTGTGCTGGAAAGATTGGATTTTAGAGCGAGTTATGTTGTTACCTTCTGGGACCTTTGACCAGTTATTAGTTATGCTTTGGAGTATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
Motile_Sperm Pkinase ubiquitin

Protein Analysis

305

Amino Acids

34.42

Weight (kDa)

8.98

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 168 - 263 1.6e-16 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 707
AccB1I GGYRCC 1 cut(s) 707
AccBSI CCGCTC 1 cut(s) 653
AccII CGCG 1 cut(s) 781
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 2 cut(s) 653, 800
AclWI GGATC 6 cut(s) 157, 283, 296, 572, 585, 781
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 270
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 3 cut(s) 137, 521, 709
AfiI CCNNNNNNNGG 1 cut(s) 573
AgsI TTSAA 4 cut(s) 96, 127, 410, 694
AjiI CACGTC 1 cut(s) 215
AluBI AGCT 4 cut(s) 164, 530, 602, 614
AluI AGCT 4 cut(s) 164, 530, 602, 614
Alw21I GWGCWC 2 cut(s) 731, 799
Alw26I GTCTC 4 cut(s) 79, 304, 335, 352
Alw44I GTGCAC 1 cut(s) 795
AlwI GGATC 6 cut(s) 157, 283, 296, 572, 585, 781
AlwNI CAGNNNCTG 1 cut(s) 350
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 1 cut(s) 114
ApaLI GTGCAC 1 cut(s) 795
ApoI RAATTY 1 cut(s) 270
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AseI ATTAAT 1 cut(s) 360
Asp718I GGTACC 1 cut(s) 707
AspLEI GCGC 4 cut(s) 246, 394, 456, 781
AspS9I GGNCC 2 cut(s) 587, 876
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 2 cut(s) 587, 876
AxyI CCTNAGG 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 799
BaeI ACNNNNGTAYC 2 cut(s) 691, 724
BalI TGGCCA 1 cut(s) 116
BamHI GGATCC 2 cut(s) 288, 577
BanI GGYRCC 1 cut(s) 707
Bbv12I GWGCWC 2 cut(s) 731, 799
BccI CCATC 2 cut(s) 199, 644
BceAI ACGGC 1 cut(s) 696
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 4 cut(s) 79, 304, 335, 352
BfaI CTAG 2 cut(s) 624, 749
BfmI CTRYAG 1 cut(s) 769
BfoI RGCGCY 1 cut(s) 457
Bme18I GGWCC 2 cut(s) 587, 876
BmgBI CACGTC 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 587, 876
BmiI GGNNCC 5 cut(s) 290, 579, 621, 709, 877
BmrI ACTGGG 1 cut(s) 582
BmuI ACTGGG 1 cut(s) 582
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpmI CTGGAG 1 cut(s) 667
Bpu10I CCTNAGC 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 324, 790
BsaWI WCCGGW 2 cut(s) 100, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 573
Bse1I ACTGG 2 cut(s) 577, 886
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 259
BseAI TCCGGA 1 cut(s) 100
BseDI CCNNGG 2 cut(s) 324, 790
BseGI GGATG 2 cut(s) 283, 818
BseLI CCNNNNNNNGG 1 cut(s) 573
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 4 cut(s) 308, 345, 437, 629
BseNI ACTGG 2 cut(s) 577, 886
BseRI GAGGAG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 799
Bsh1236I CGCG 1 cut(s) 781
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 707
BsiHKAI GWGCWC 2 cut(s) 731, 799
BsiSI CCGG 2 cut(s) 101, 218
BslFI GGGAC 1 cut(s) 889
BslI CCNNNNNNNGG 1 cut(s) 573
BsmAI GTCTC 4 cut(s) 79, 304, 335, 352
BsmFI GGGAC 1 cut(s) 889
BsnI GGCC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 304
Bsp1286I GDGCHC 2 cut(s) 731, 799
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 6 cut(s) 149, 175, 288, 367, 577, 786
BspACI CCGC 2 cut(s) 653, 800
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 4 cut(s) 307, 344, 438, 628
BspEI TCCGGA 1 cut(s) 100
BspFNI CGCG 1 cut(s) 781
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 5 cut(s) 290, 579, 621, 709, 877
BspPI GGATC 6 cut(s) 157, 283, 296, 572, 585, 781
BspT107I GGYRCC 1 cut(s) 707
BspTNI GGTCTC 1 cut(s) 304
BsrBI CCGCTC 1 cut(s) 653
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 2 cut(s) 577, 886
BssECI CCNNGG 2 cut(s) 324, 790
BssMI GATC 6 cut(s) 149, 175, 288, 367, 577, 786
BssT1I CCWWGG 1 cut(s) 790
Bst4CI ACNGT 4 cut(s) 240, 346, 717, 770
BstC8I GCNNGC 5 cut(s) 228, 232, 452, 474, 532
BstDEI CTNAG 5 cut(s) 58, 294, 331, 446, 615
BstF5I GGATG 2 cut(s) 283, 818
BstFNI CGCG 1 cut(s) 781
BstH2I RGCGCY 1 cut(s) 457
BstHHI GCGC 4 cut(s) 246, 394, 456, 781
BstKTI GATC 6 cut(s) 152, 178, 291, 370, 580, 789
BstMAI GTCTC 4 cut(s) 79, 304, 335, 352
BstMBI GATC 6 cut(s) 149, 175, 288, 367, 577, 786
BstSFI CTRYAG 1 cut(s) 769
BstSLI GKGCMC 1 cut(s) 799
BstUI CGCG 1 cut(s) 781
BstX2I RGATCY 3 cut(s) 288, 577, 786
BstYI RGATCY 3 cut(s) 288, 577, 786
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 1 cut(s) 116
BtrI CACGTC 1 cut(s) 215
BtsCI GGATG 2 cut(s) 283, 818
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 4 cut(s) 138, 423, 722, 766
Cac8I GCNNGC 5 cut(s) 228, 232, 452, 474, 532
CaiI CAGNNNCTG 1 cut(s) 350
CciI TCATGA 1 cut(s) 364
CfoI GCGC 4 cut(s) 246, 394, 456, 781
Cfr13I GGNCC 2 cut(s) 587, 876
Csp6I GTAC 3 cut(s) 136, 520, 708
CviAII CATG 5 cut(s) 64, 192, 365, 477, 737
CviQI GTAC 3 cut(s) 136, 520, 708
DdeI CTNAG 5 cut(s) 58, 294, 331, 446, 615
DpnI GATC 6 cut(s) 151, 177, 290, 369, 579, 788
DpnII GATC 6 cut(s) 149, 175, 288, 367, 577, 786
DraI TTTAAA 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 304
Eco32I GATATC 1 cut(s) 385
Eco47I GGWCC 2 cut(s) 587, 876
Eco57I CTGAAG 1 cut(s) 399
Eco81I CCTNAGG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 876
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 790
FaeI CATG 5 cut(s) 67, 195, 368, 480, 740
FaqI GGGAC 1 cut(s) 889
FatI CATG 5 cut(s) 63, 191, 364, 476, 736
FbaI TGATCA 1 cut(s) 175
FokI GGATG 2 cut(s) 290, 805
FspBI CTAG 2 cut(s) 624, 749
GlaI GCGC 4 cut(s) 245, 393, 455, 780
GsuI CTGGAG 1 cut(s) 667
HaeII RGCGCY 1 cut(s) 457
HaeIII GGCC 1 cut(s) 116
HapII CCGG 2 cut(s) 101, 218
HhaI GCGC 4 cut(s) 246, 394, 456, 781
Hin1II CATG 5 cut(s) 67, 195, 368, 480, 740
Hin6I GCGC 4 cut(s) 244, 392, 454, 779
HinP1I GCGC 4 cut(s) 244, 392, 454, 779
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 3 cut(s) 104, 199, 329
HpaI GTTAAC 1 cut(s) 658
HpaII CCGG 2 cut(s) 101, 218
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 3 cut(s) 136, 658, 797
Hpy188I TCNGA 4 cut(s) 204, 328, 352, 447
Hpy188III TCNNGA 4 cut(s) 70, 101, 365, 749
Hpy8I GTNNAC 3 cut(s) 136, 658, 797
HpyAV CCTTC 5 cut(s) 192, 423, 547, 688, 879
HpyCH4III ACNGT 4 cut(s) 240, 346, 717, 770
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 4 cut(s) 226, 476, 534, 797
HpyF3I CTNAG 5 cut(s) 58, 294, 331, 446, 615
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 5 cut(s) 67, 195, 368, 480, 740
HspAI GCGC 4 cut(s) 244, 392, 454, 779
Kpn2I TCCGGA 1 cut(s) 100
KpnI GGTACC 1 cut(s) 711
Ksp22I TGATCA 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 658
Kzo9I GATC 6 cut(s) 149, 175, 288, 367, 577, 786
MaeI CTAG 2 cut(s) 624, 749
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 3 cut(s) 497, 698, 864
MalI GATC 6 cut(s) 151, 177, 290, 369, 579, 788
MbiI CCGCTC 1 cut(s) 653
MboI GATC 6 cut(s) 149, 175, 288, 367, 577, 786
MflI RGATCY 3 cut(s) 288, 577, 786
MhlI GDGCHC 2 cut(s) 731, 799
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 1 cut(s) 270
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 2 cut(s) 208, 323
MmeI TCCRAC 1 cut(s) 62
Mox20I TGGCCA 1 cut(s) 116
MroI TCCGGA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 116
MseI TTAA 3 cut(s) 36, 360, 657
Msp20I TGGCCA 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 2 cut(s) 101, 218
MssI GTTTAAAC 1 cut(s) 37
MvnI CGCG 1 cut(s) 781
NdeII GATC 6 cut(s) 149, 175, 288, 367, 577, 786
NlaIII CATG 5 cut(s) 67, 195, 368, 480, 740
NlaIV GGNNCC 5 cut(s) 290, 579, 621, 709, 877
PagI TCATGA 1 cut(s) 364
PfeI GAWTC 1 cut(s) 104
PleI GAGTC 2 cut(s) 207, 323
PmeI GTTTAAAC 1 cut(s) 37
PpsI GAGTC 2 cut(s) 207, 323
PpuMI RGGWCCY 1 cut(s) 876
PshBI ATTAAT 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 876
PspN4I GGNNCC 5 cut(s) 290, 579, 621, 709, 877
PspPI GGNCC 2 cut(s) 587, 876
PspPPI RGGWCCY 1 cut(s) 876
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 3 cut(s) 288, 577, 786
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 3 cut(s) 137, 521, 709
RsaNI GTAC 3 cut(s) 136, 520, 708
SaqAI TTAA 3 cut(s) 36, 360, 657
Sau3AI GATC 6 cut(s) 149, 175, 288, 367, 577, 786
Sau96I GGNCC 2 cut(s) 587, 876
SchI GAGTC 2 cut(s) 208, 323
SduI GDGCHC 2 cut(s) 731, 799
SfcI CTRYAG 1 cut(s) 769
SinI GGWCC 2 cut(s) 587, 876
Sse9I AATT 1 cut(s) 270
SsiI CCGC 2 cut(s) 653, 800
SspMI CTAG 2 cut(s) 624, 749
StyI CCWWGG 1 cut(s) 790
TaaI ACNGT 4 cut(s) 240, 346, 717, 770
TaiI ACGT 1 cut(s) 217
TaqI TCGA 2 cut(s) 71, 319
TaqII GACCGA 1 cut(s) 496
TasI AATT 1 cut(s) 270
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 3 cut(s) 36, 360, 657
Tru9I TTAA 3 cut(s) 36, 360, 657
TscAI CASTG 4 cut(s) 138, 423, 722, 773
TspGWI ACGGA 1 cut(s) 691
TspRI CASTG 4 cut(s) 138, 423, 722, 773
VneI GTGCAC 1 cut(s) 795
VpaK11BI GGWCC 2 cut(s) 587, 876
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 1 cut(s) 270
XbaI TCTAGA 1 cut(s) 748
XspI CTAG 2 cut(s) 624, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.