Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005522

Physical Location & Seq

Genomic Coordinates Forward (+)

53493271 .. 53493732

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG305000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTGGACGTCAAGACAGCAGTTCAGAGCCTGAAGAGCTTCCCAATTTGTTCCCAGCAGCTATACTGTCATGAAAGATTGCTGAAAGATTGGAAAAATCTTTGGGAGAGTAGTGTTGTTACAAAGTGGTTATTTGTTAGCTCTCAATTAACAATGTTCATTGAGACACCAAACCATAAGAAGGTTGTAATCAAACCTAGCAGTAGAAATGCAGTTCATAACATTTTGTACATGATTCCTAAACCAGCCCTCAACAAAATCAATTGGAAGCCAAGGCTCTTCCTTGATGGTAATGTTCTCCCAGAGCACAAAACCCTGGCTCAGTTGGGTGTTCAGTCAGGTGTGGTTTTATGGTTGGACCGTCTTGTGCAGATTGATGTCACCAGGCCAAATGGGGCAACCATTCATGTGAATATGAACCTTTCTTACAAAATCAAAGCTGTCAAGGAGAAAATTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

153

Amino Acids

17.63

Weight (kDa)

9.79

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21010
pyrus_communis	pycom05g18030
rosa_chinensis	RchiOBHm_Chr6g0287481 RchiOBHm_Chr6g0287491
rosa_laevigata	RLG00000012490 RLG00000012492
rosa_multiflora	Rmu_sc0007029.1_g000014 Rmu_sc0007029.1_g000017 Rmu_sc0007029.1_g000018
rosa_roxburghii	Rroxscaffold_7G00181430 Rroxscaffold_7G00181450 Rroxscaffold_7G00181460 Rroxscaffold_7G00181470
rosa_rugosa	Rorug06G0188000.1 Rorug06G0188300
rosa_samantha	Rh6AG299600 Rh6AG299700 Rh6BG304900 Rh6BG305000 Rh6BG305100 Rh6CG304400 Rh6CG304600 Rh6CG304700 Rh6CG313400 Rh6CG313500 Rh6CG313700 Rh6DG296800 Rh6DG296900
rosa_wichuraiana	Rw6G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	315, 383
AluBI	AGCT	4 cut(s)	39, 61, 141, 440
AluI	AGCT	4 cut(s)	39, 61, 141, 440
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	281
BciT130I	CCWGG	2 cut(s)	317, 385
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	2 cut(s)	317, 385
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmrFI	CCNGG	2 cut(s)	317, 385
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	272, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseBI	CCWGG	2 cut(s)	317, 385
BseDI	CCNNGG	2 cut(s)	272, 315
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp1407I	TGTACA	1 cut(s)	228
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	70
BspQI	GCTCTTC	2 cut(s)	29, 284
BsrGI	TGTACA	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	272, 315
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	2 cut(s)	317, 385
Bst4CI	ACNGT	2 cut(s)	68, 362
Bst6I	CTCTTC	2 cut(s)	29, 284
BstACI	GRCGYC	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNI	CCWGG	2 cut(s)	317, 385
BstSCI	CCNGG	2 cut(s)	315, 383
BstV1I	GCAGC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	3 cut(s)	71, 232, 407
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	29, 284
EarI	CTCTTC	2 cut(s)	29, 284
Eco130I	CCWWGG	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	315, 383
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	3 cut(s)	74, 235, 410
FaiI	YATR	8 cut(s)	64, 72, 177, 219, 233, 352, 408, 416
FatI	CATG	3 cut(s)	70, 231, 406
Fnu4HI	GCNGC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	388
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	74, 235, 410
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	1 cut(s)	373
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	2 cut(s)	13, 71
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	2 cut(s)	68, 362
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	212, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	74, 235, 410
LguI	GCTCTTC	2 cut(s)	29, 284
LpnPI	CCDG	9 cut(s)	44, 68, 258, 302, 315, 324, 329, 370, 397
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	118, 379
MboII	GAAGA	2 cut(s)	46, 271
MfeI	CAATTG	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	4 cut(s)	45, 146, 262, 453
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	407
MspR9I	CCNGG	2 cut(s)	317, 385
MunI	CAATTG	1 cut(s)	262
MvaI	CCWGG	2 cut(s)	317, 385
MwoI	GCNNNNNNNGC	1 cut(s)	36
NlaIII	CATG	3 cut(s)	74, 235, 410
NmuCI	GTSAC	1 cut(s)	379
PagI	TCATGA	1 cut(s)	70
PciSI	GCTCTTC	2 cut(s)	29, 284
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	315, 383
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	2 cut(s)	315, 383
PspPI	GGNCC	1 cut(s)	358
PsrI	GAACNNNNNNTAC	2 cut(s)	410, 442
PstNI	CAGNNNCTG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	407
SapI	GCTCTTC	2 cut(s)	29, 284
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	358
ScrFI	CCNGG	2 cut(s)	317, 385
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	9 cut(s)	12, 41, 63, 143, 186, 199, 343, 423, 442
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	4 cut(s)	45, 146, 262, 453
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	315, 383
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	2 cut(s)	68, 362
TaiI	ACGT	1 cut(s)	12
TasI	AATT	4 cut(s)	45, 146, 262, 453
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	5 cut(s)	87, 148, 206, 395, 431
VpaK11BI	GGWCC	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	1 cut(s)	198
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.