Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005522

Physical Location & Seq

Genomic Coordinates Reverse (-)

20565835 .. 20566773

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00181460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTTTGTCTTGATGATGATGGGAAGCCCCTTGTGTTTTACGATGTAGTAGAGAAATCTACGATTTGGGTACTTGGTTTGGCTGTGAAATTGACCATCAAGATGCCACAGGCTGGAGATGTGGTGACCCTCAGTGCTTATAGGGTCAACACCGGAGACTCCCATTCGCATGTGTTCAAGGTGGAATGCTCAAGTTACGAAGAATCAGAAAGCGAGTTGGATGTTGAAGAGTCGGAGGAGGAAACATTTGTACTCCAGTTGAAATCTTCGAATACCATGTTGGACGTCAAGACAGCAGTTCAGAGCCTGAAGAGCTTCCCAGTTTGTTCCCAGCAGCTATACTGTCATGAAAGATTGCTGAAAGATTGGAAAAATCTTTGGGAGAGCAGTGTTGTTACAAAGTGGATATTTGTTAGCTCTCAATTAACAATGTTCATTGAGACACCAAACCAGAAGAAGGTTGTAATCAATCCTAGCAGTAGAAATGCAGTTCATAACATTTTGTACATGATTCCCAAACAAGCCCTCGACAAAATCAATTGGAAGCGAAGGCTATTCCTTGATGGTAATGTTCTCCCAGAGCACAAAACCCTGGCTCAGTTGGGCGTTCAGTCAGGTGTGGTTTTATGGTTGGATCTTCTTGTGCAGATTGATGTCACCAGGCCAAATGGTGCAACCATTCATGTGAATACGAACCTCTCACAAAATCAAAGCTGTCAAGGAGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

243

Amino Acids

27.5

Weight (kDa)

5.54

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21010
pyrus_communis	pycom05g18030
rosa_chinensis	RchiOBHm_Chr6g0287481 RchiOBHm_Chr6g0287491
rosa_laevigata	RLG00000012490 RLG00000012492
rosa_multiflora	Rmu_sc0007029.1_g000014 Rmu_sc0007029.1_g000017 Rmu_sc0007029.1_g000018
rosa_roxburghii	Rroxscaffold_7G00181430 Rroxscaffold_7G00181450 Rroxscaffold_7G00181460 Rroxscaffold_7G00181470
rosa_rugosa	Rorug06G0188000.1 Rorug06G0188300
rosa_samantha	Rh6AG299600 Rh6AG299700 Rh6BG304900 Rh6BG305000 Rh6BG305100 Rh6CG304400 Rh6CG304600 Rh6CG304700 Rh6CG313400 Rh6CG313500 Rh6CG313700 Rh6DG296800 Rh6DG296900
rosa_wichuraiana	Rw6G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccB7I	CCANNNNNTGG	1 cut(s)	113
AclWI	GGATC	1 cut(s)	642
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	3 cut(s)	72, 252, 506
AfiI	CCNNNNNNNGG	2 cut(s)	113, 457
AgsI	TTSAA	3 cut(s)	178, 227, 262
AjnI	CCWGG	2 cut(s)	591, 659
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	4 cut(s)	315, 337, 417, 714
AluI	AGCT	4 cut(s)	315, 337, 417, 714
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	2 cut(s)	150, 434
AlwI	GGATC	1 cut(s)	642
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	1 cut(s)	662
ApeKI	GCWGC	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	136, 649
AsuII	TTCGAA	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	3 cut(s)	14, 104, 557
BciT130I	CCWGG	2 cut(s)	593, 661
BcoDI	GTCTC	2 cut(s)	150, 434
BfaI	CTAG	1 cut(s)	474
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
Bme1390I	CCNGG	2 cut(s)	593, 661
BmrFI	CCNGG	2 cut(s)	593, 661
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	314
BpmI	CTGGAG	2 cut(s)	135, 239
Bpu14I	TTCGAA	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	591
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 457
Bse1I	ACTGG	2 cut(s)	256, 320
BseBI	CCWGG	2 cut(s)	593, 661
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	2 cut(s)	113, 457
BseMII	CTCAG	2 cut(s)	145, 611
BseNI	ACTGG	2 cut(s)	256, 320
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	330
BsgI	GTGCAG	1 cut(s)	665
BshFI	GGCC	1 cut(s)	664
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	113, 457
BsmAI	GTCTC	2 cut(s)	150, 434
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	664
Bsp119I	TTCGAA	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	1 cut(s)	634
BspANI	GGCC	1 cut(s)	664
BspCNI	CTCAG	2 cut(s)	144, 610
BspHI	TCATGA	1 cut(s)	346
BspPI	GGATC	1 cut(s)	642
BspQI	GCTCTTC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	2 cut(s)	256, 320
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	1 cut(s)	634
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	593, 661
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	2 cut(s)	222, 305
BstACI	GRCGYC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	504
BstBI	TTCGAA	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	131, 597
BstEII	GGTNACC	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	2 cut(s)	150, 434
BstMBI	GATC	1 cut(s)	634
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNI	CCWGG	2 cut(s)	593, 661
BstNSI	RCATGY	1 cut(s)	173
BstPI	GGTNACC	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	591, 659
BstV1I	GCAGC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	664
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	139, 394
CaiI	CAGNNNCTG	1 cut(s)	307
CciI	TCATGA	1 cut(s)	346
Csp6I	GTAC	3 cut(s)	71, 251, 505
CviAII	CATG	5 cut(s)	170, 277, 347, 508, 683
CviQI	GTAC	3 cut(s)	71, 251, 505
DdeI	CTNAG	2 cut(s)	131, 597
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
Eam1104I	CTCTTC	2 cut(s)	222, 305
EarI	CTCTTC	2 cut(s)	222, 305
Eco57I	CTGAAG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	124
EcoO65I	GGTNACC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	591, 659
FaeI	CATG	5 cut(s)	173, 280, 350, 511, 686
FaiI	YATR	9 cut(s)	141, 171, 278, 340, 348, 495, 509, 628, 684
FatI	CATG	5 cut(s)	169, 276, 346, 507, 682
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	1 cut(s)	335
GsaI	CCCAGC	1 cut(s)	334
GsuI	CTGGAG	2 cut(s)	135, 239
HaeIII	GGCC	1 cut(s)	664
HapII	CCGG	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	5 cut(s)	173, 280, 350, 511, 686
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	4 cut(s)	158, 203, 230, 511
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	136, 649
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	208, 235, 303
Hpy188III	TCNNGA	4 cut(s)	11, 100, 289, 347
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	451, 543
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	488, 646, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	2 cut(s)	131, 597
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	5 cut(s)	173, 280, 350, 511, 686
Kzo9I	GATC	1 cut(s)	634
LguI	GCTCTTC	1 cut(s)	305
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	4 cut(s)	124, 194, 394, 655
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	6 cut(s)	212, 239, 258, 322, 466, 629
MfeI	CAATTG	1 cut(s)	538
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	4 cut(s)	89, 422, 538, 727
MlyI	GAGTC	2 cut(s)	152, 239
MmeI	TCCRAC	4 cut(s)	198, 213, 261, 612
MnlI	CCTC	5 cut(s)	140, 229, 232, 536, 707
MroXI	GAANNNNTTC	1 cut(s)	314
MseI	TTAA	1 cut(s)	425
MslI	CAYNNNNRTG	3 cut(s)	101, 168, 683
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	593, 661
MunI	CAATTG	1 cut(s)	538
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	2 cut(s)	593, 661
MwoI	GCNNNNNNNGC	1 cut(s)	312
NdeII	GATC	1 cut(s)	634
NlaIII	CATG	5 cut(s)	173, 280, 350, 511, 686
NmuCI	GTSAC	2 cut(s)	124, 655
NspI	RCATGY	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	269
PagI	TCATGA	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	305
PctI	GAATGC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	203, 511
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	2 cut(s)	152, 238
PpsI	GAGTC	2 cut(s)	152, 238
Psp6I	CCWGG	2 cut(s)	591, 659
PspEI	GGTNACC	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	330
PspGI	CCWGG	2 cut(s)	591, 659
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	634
RsaI	GTAC	3 cut(s)	72, 252, 506
RsaNI	GTAC	3 cut(s)	71, 251, 505
RseI	CAYNNNNRTG	3 cut(s)	101, 168, 683
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	425
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	1 cut(s)	634
SchI	GAGTC	2 cut(s)	152, 239
ScrFI	CCNGG	2 cut(s)	593, 661
SduI	GDGCHC	1 cut(s)	585
SetI	ASST	9 cut(s)	183, 288, 317, 339, 419, 462, 619, 699, 716
SfaNI	GCATC	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	269
SmiMI	CAYNNNNRTG	3 cut(s)	101, 168, 683
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	4 cut(s)	89, 422, 538, 727
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	2 cut(s)	591, 659
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	269, 528
TasI	AATT	4 cut(s)	89, 422, 538, 727
TatI	WGTACW	2 cut(s)	250, 504
TfiI	GAWTC	2 cut(s)	203, 511
Tru1I	TTAA	1 cut(s)	425
Tru9I	TTAA	1 cut(s)	425
TscAI	CASTG	2 cut(s)	139, 394
TseFI	GTSAC	2 cut(s)	124, 655
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	2 cut(s)	124, 655
TspDTI	ATGAA	4 cut(s)	363, 424, 482, 671
TspRI	CASTG	2 cut(s)	139, 394
Van91I	CCANNNNNTGG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	1 cut(s)	474
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.