Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007029.1

Orthogroup ID

OG0005522

Physical Location & Seq

Genomic Coordinates Reverse (-)

81758 .. 82603

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007029.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgccacagcctggagatgtggtgaccctcagtgcttataggatcaacaccgtaaaggacattaagtcttatatatttgagaagatggggatcccatttaacagagatgatgatgaacaagttccatatgttgaaaaaataaagttaattttcaagggagactcccattcacatgtgttcaaggtggaatgctcaagttacgaagaatcaaaaagcgagttggatgacgaagagtcggaggaggaaacatttgtactccagttgaaatcttcaaacaccatgttggacgtcaagacagtagttcagagcctgaagagcttcccagtttgttcccagcagctatactgtcatgaaagattgctgaaagattggaaaaatctttgggagagtagtgttgttacaaagtggttatttgttagctctcaattaacaatgttcattgagacaccaaaccataagaaggttgtaatcaaacctagcagtagaaatgcaattcataacattttgtacatgattcccaaacaagccctcaacaaaatcaattggaagccaaggctcttccttgatggtaatgttctcctagagcacaaaaccctggctcagttgggtgttcagtcaggtgtggttttatggttggactgtcttgtgcagattgatgtcaccaggccaaatggtgcaaccattcatgtgaatatgaacctttcttacaaaatcaaagctgtcaaggagaaaattgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

246

Amino Acids

28.37

Weight (kDa)

7.05

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21010
pyrus_communis	pycom05g18030
rosa_chinensis	RchiOBHm_Chr6g0287481 RchiOBHm_Chr6g0287491
rosa_laevigata	RLG00000012490 RLG00000012492
rosa_multiflora	Rmu_sc0007029.1_g000014 Rmu_sc0007029.1_g000017 Rmu_sc0007029.1_g000018
rosa_roxburghii	Rroxscaffold_7G00181430 Rroxscaffold_7G00181450 Rroxscaffold_7G00181460 Rroxscaffold_7G00181470
rosa_rugosa	Rorug06G0188000.1 Rorug06G0188300
rosa_samantha	Rh6AG299600 Rh6AG299700 Rh6BG304900 Rh6BG305000 Rh6BG305100 Rh6CG304400 Rh6CG304600 Rh6CG304700 Rh6CG313400 Rh6CG313500 Rh6CG313700 Rh6DG296800 Rh6DG296900
rosa_wichuraiana	Rw6G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccB7I	CCANNNNNTGG	1 cut(s)	11
AclWI	GGATC	3 cut(s)	50, 85, 98
AcuI	CTGAAG	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	2 cut(s)	255, 509
AfiI	CCNNNNNNNGG	2 cut(s)	11, 460
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	6 cut(s)	134, 154, 181, 265, 273, 737
AhdI	GACNNNNNGTC	2 cut(s)	64, 232
AjnI	CCWGG	3 cut(s)	10, 594, 662
AluBI	AGCT	4 cut(s)	318, 340, 420, 719
AluI	AGCT	4 cut(s)	318, 340, 420, 719
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	2 cut(s)	153, 437
AlwI	GGATC	3 cut(s)	50, 85, 98
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	1 cut(s)	665
ApeKI	GCWGC	1 cut(s)	337
Asp700I	GAANNNNTTC	2 cut(s)	120, 317
AsuHPI	GGTGA	2 cut(s)	34, 652
BamHI	GGATCC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	2 cut(s)	79, 560
BciT130I	CCWGG	3 cut(s)	12, 596, 664
BcoDI	GTCTC	2 cut(s)	153, 437
BfaI	CTAG	2 cut(s)	477, 581
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	3 cut(s)	12, 596, 664
BmeRI	GACNNNNNGTC	2 cut(s)	64, 232
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	3 cut(s)	12, 596, 664
BmrI	ACTGGG	1 cut(s)	317
BmuI	ACTGGG	1 cut(s)	317
BpmI	CTGGAG	2 cut(s)	33, 242
BpuEI	CTTGAG	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	551, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 460
Bse1I	ACTGG	2 cut(s)	259, 323
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	3 cut(s)	12, 596, 664
BseDI	CCNNGG	2 cut(s)	551, 594
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	11, 460
BseMII	CTCAG	2 cut(s)	43, 614
BseNI	ACTGG	2 cut(s)	259, 323
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	349
BseYI	CCCAGC	1 cut(s)	333
BsgI	GTGCAG	1 cut(s)	668
BshFI	GGCC	1 cut(s)	667
BsiHKAI	GWGCWC	1 cut(s)	588
BslI	CCNNNNNNNGG	2 cut(s)	11, 460
BsmAI	GTCTC	2 cut(s)	153, 437
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	667
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	2 cut(s)	42, 90
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	2 cut(s)	42, 613
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	3 cut(s)	50, 85, 98
BspQI	GCTCTTC	2 cut(s)	308, 563
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	259, 323
BssECI	CCNNGG	2 cut(s)	551, 594
BssMI	GATC	2 cut(s)	42, 90
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	551
Bst2UI	CCWGG	3 cut(s)	12, 596, 664
Bst4CI	ACNGT	4 cut(s)	52, 298, 347, 641
Bst6I	CTCTTC	3 cut(s)	225, 308, 563
BstACI	GRCGYC	1 cut(s)	288
BstAUI	TGTACA	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	29, 600
BstEII	GGTNACC	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	2 cut(s)	45, 93
BstMAI	GTCTC	2 cut(s)	153, 437
BstMBI	GATC	2 cut(s)	42, 90
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	3 cut(s)	12, 596, 664
BstNSI	RCATGY	1 cut(s)	176
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	10, 594, 662
BstV1I	GCAGC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	667
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	310
CciI	TCATGA	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	254, 508
CviAII	CATG	5 cut(s)	173, 280, 350, 511, 686
CviQI	GTAC	2 cut(s)	254, 508
DdeI	CTNAG	2 cut(s)	29, 600
DpnI	GATC	2 cut(s)	44, 92
DpnII	GATC	2 cut(s)	42, 90
DriI	GACNNNNNGTC	2 cut(s)	64, 232
Eam1104I	CTCTTC	3 cut(s)	225, 308, 563
Eam1105I	GACNNNNNGTC	2 cut(s)	64, 232
EarI	CTCTTC	3 cut(s)	225, 308, 563
Eco130I	CCWWGG	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	22
EcoO65I	GGTNACC	1 cut(s)	22
EcoRII	CCWGG	3 cut(s)	10, 594, 662
EcoT14I	CCWWGG	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	5 cut(s)	176, 283, 353, 514, 689
FatI	CATG	5 cut(s)	172, 279, 349, 510, 685
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	2 cut(s)	477, 581
GluI	GCNGC	1 cut(s)	338
GsaI	CCCAGC	1 cut(s)	337
GsuI	CTGGAG	2 cut(s)	33, 242
HaeIII	GGCC	1 cut(s)	667
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	5 cut(s)	176, 283, 353, 514, 689
HinfI	GANTC	4 cut(s)	161, 206, 233, 514
HphI	GGTGA	2 cut(s)	34, 652
Hpy188I	TCNGA	2 cut(s)	238, 306
Hpy188III	TCNNGA	2 cut(s)	292, 350
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	4 cut(s)	52, 298, 347, 641
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	491, 649, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	2 cut(s)	29, 600
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	176, 283, 353, 514, 689
Kzo9I	GATC	2 cut(s)	42, 90
LguI	GCTCTTC	2 cut(s)	308, 563
Lsp1109I	GCAGC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	477, 581
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	4 cut(s)	22, 197, 397, 658
MalI	GATC	2 cut(s)	44, 92
MboI	GATC	2 cut(s)	42, 90
MboII	GAAGA	6 cut(s)	94, 215, 242, 261, 325, 550
MfeI	CAATTG	1 cut(s)	541
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	5 cut(s)	147, 425, 492, 541, 732
MlyI	GAGTC	2 cut(s)	155, 242
MmeI	TCCRAC	4 cut(s)	201, 216, 264, 615
MnlI	CCTC	4 cut(s)	38, 232, 235, 539
MroXI	GAANNNNTTC	2 cut(s)	120, 317
MseI	TTAA	4 cut(s)	63, 99, 146, 428
MslI	CAYNNNNRTG	2 cut(s)	171, 686
MspR9I	CCNGG	3 cut(s)	12, 596, 664
MunI	CAATTG	1 cut(s)	541
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	3 cut(s)	12, 596, 664
MwoI	GCNNNNNNNGC	1 cut(s)	315
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	2 cut(s)	42, 90
NlaIII	CATG	5 cut(s)	176, 283, 353, 514, 689
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	2 cut(s)	22, 658
NspI	RCATGY	1 cut(s)	176
PagI	TCATGA	1 cut(s)	349
PciI	ACATGT	1 cut(s)	172
PciSI	GCTCTTC	2 cut(s)	308, 563
PctI	GAATGC	1 cut(s)	194
PdmI	GAANNNNTTC	2 cut(s)	120, 317
PfeI	GAWTC	2 cut(s)	206, 514
PflMI	CCANNNNNTGG	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	2 cut(s)	155, 241
PpsI	GAGTC	2 cut(s)	155, 241
PscI	ACATGT	1 cut(s)	172
Psp6I	CCWGG	3 cut(s)	10, 594, 662
PspEI	GGTNACC	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	333
PspGI	CCWGG	3 cut(s)	10, 594, 662
PspN4I	GGNNCC	1 cut(s)	92
PsrI	GAACNNNNNNTAC	2 cut(s)	689, 721
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	2 cut(s)	255, 509
RsaNI	GTAC	2 cut(s)	254, 508
RseI	CAYNNNNRTG	2 cut(s)	171, 686
SapI	GCTCTTC	2 cut(s)	308, 563
SaqAI	TTAA	4 cut(s)	63, 99, 146, 428
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	2 cut(s)	42, 90
SchI	GAGTC	2 cut(s)	155, 242
ScrFI	CCNGG	3 cut(s)	12, 596, 664
SduI	GDGCHC	1 cut(s)	588
SmiMI	CAYNNNNRTG	2 cut(s)	171, 686
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	5 cut(s)	147, 425, 492, 541, 732
SspMI	CTAG	2 cut(s)	477, 581
StyD4I	CCNGG	3 cut(s)	10, 594, 662
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	4 cut(s)	52, 298, 347, 641
TaiI	ACGT	1 cut(s)	291
TasI	AATT	5 cut(s)	147, 425, 492, 541, 732
TatI	WGTACW	2 cut(s)	253, 507
TfiI	GAWTC	2 cut(s)	206, 514
Tru1I	TTAA	4 cut(s)	63, 99, 146, 428
Tru9I	TTAA	4 cut(s)	63, 99, 146, 428
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	2 cut(s)	22, 658
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	2 cut(s)	22, 658
TspDTI	ATGAA	6 cut(s)	129, 366, 427, 485, 674, 710
TspRI	CASTG	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	11
XceI	RCATGY	1 cut(s)	176
XmnI	GAANNNNTTC	2 cut(s)	120, 317
XspI	CTAG	2 cut(s)	477, 581
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.