Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g21010 |
| pyrus_communis | pycom05g18030 |
| rosa_chinensis | RchiOBHm_Chr6g0287481 RchiOBHm_Chr6g0287491 |
| rosa_laevigata | RLG00000012490 RLG00000012492 |
| rosa_multiflora | Rmu_sc0007029.1_g000014 Rmu_sc0007029.1_g000017 Rmu_sc0007029.1_g000018 |
| rosa_roxburghii | Rroxscaffold_7G00181430 Rroxscaffold_7G00181450 Rroxscaffold_7G00181460 Rroxscaffold_7G00181470 |
| rosa_rugosa | Rorug06G0188000.1 Rorug06G0188300 |
| rosa_samantha | Rh6AG299600 Rh6AG299700 Rh6BG304900 Rh6BG305000 Rh6BG305100 Rh6CG304400 Rh6CG304600 Rh6CG304700 Rh6CG313400 Rh6CG313500 Rh6CG313700 Rh6DG296800 Rh6DG296900 |
| rosa_wichuraiana | Rw6G025850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1230 |
| Acc65I | GGTACC | 1 cut(s) | 965 |
| AccB1I | GGYRCC | 1 cut(s) | 965 |
| AccI | GTMKAC | 3 cut(s) | 432, 488, 1152 |
| AccII | CGCG | 1 cut(s) | 21 |
| AciI | CCGC | 3 cut(s) | 253, 527, 675 |
| AcoI | YGGCCR | 1 cut(s) | 493 |
| AcsI | RAATTY | 4 cut(s) | 938, 1383, 1416, 1775 |
| AcuI | CTGAAG | 1 cut(s) | 624 |
| AcyI | GRCGYC | 1 cut(s) | 285 |
| AfaI | GTAC | 5 cut(s) | 888, 967, 1390, 1936, 1964 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 929 |
| AgsI | TTSAA | 9 cut(s) | 226, 332, 752, 1084, 1214, 1574, 1679, 1780, 1802 |
| AjnI | CCWGG | 3 cut(s) | 482, 1621, 1940 |
| AleI | CACNNNNGTG | 2 cut(s) | 66, 1751 |
| Alw26I | GTCTC | 5 cut(s) | 830, 1182, 1306, 1490, 1828 |
| Ama87I | CYCGRG | 1 cut(s) | 1649 |
| AoxI | GGCC | 3 cut(s) | 493, 1524, 1730 |
| ApeKI | GCWGC | 7 cut(s) | 164, 350, 609, 612, 1064, 1269, 1618 |
| ApoI | RAATTY | 4 cut(s) | 938, 1383, 1416, 1775 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 221 |
| Asp718I | GGTACC | 1 cut(s) | 965 |
| AspLEI | GCGC | 1 cut(s) | 300 |
| AspS9I | GGNCC | 5 cut(s) | 372, 634, 1461, 1524, 1730 |
| AsuHPI | GGTGA | 7 cut(s) | 187, 199, 712, 721, 778, 1274, 1862 |
| AsuII | TTCGAA | 2 cut(s) | 1311, 1381 |
| AvaI | CYCGRG | 1 cut(s) | 1649 |
| AvaII | GGWCC | 3 cut(s) | 372, 634, 1461 |
| BanI | GGYRCC | 1 cut(s) | 965 |
| BauI | CACGAG | 1 cut(s) | 678 |
| BbvCI | CCTCAGC | 1 cut(s) | 554 |
| BbvI | GCAGC | 7 cut(s) | 151, 362, 621, 624, 1076, 1281, 1630 |
| BccI | CCATC | 7 cut(s) | 254, 739, 811, 920, 997, 1631, 1841 |
| BceAI | ACGGC | 1 cut(s) | 177 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1324, 1358 |
| BciT130I | CCWGG | 3 cut(s) | 484, 1623, 1942 |
| BclI | TGATCA | 3 cut(s) | 267, 621, 1411 |
| BcoDI | GTCTC | 5 cut(s) | 830, 1182, 1306, 1490, 1828 |
| BfaI | CTAG | 8 cut(s) | 66, 308, 347, 731, 1073, 1509, 1805, 1987 |
| BfmI | CTRYAG | 2 cut(s) | 1545, 1875 |
| BfoI | RGCGCY | 1 cut(s) | 301 |
| BglII | AGATCT | 1 cut(s) | 896 |
| BisI | GCNGC | 7 cut(s) | 165, 351, 610, 613, 1065, 1270, 1619 |
| BlpI | GCTNAGC | 1 cut(s) | 947 |
| BlsI | GCNGC | 7 cut(s) | 166, 352, 611, 614, 1066, 1271, 1620 |
| Bme1390I | CCNGG | 3 cut(s) | 484, 1623, 1942 |
| Bme18I | GGWCC | 3 cut(s) | 372, 634, 1461 |
| BmeT110I | CYCGRG | 1 cut(s) | 1649 |
| BmgT120I | GGNCC | 5 cut(s) | 372, 634, 1461, 1524, 1730 |
| BmiI | GGNNCC | 3 cut(s) | 967, 1525, 1587 |
| BmrFI | CCNGG | 3 cut(s) | 484, 1623, 1942 |
| BmrI | ACTGGG | 3 cut(s) | 1414, 1497, 1737 |
| BmsI | GCATC | 5 cut(s) | 448, 774, 909, 1076, 1901 |
| BmuI | ACTGGG | 3 cut(s) | 1414, 1497, 1737 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1825, 1857 |
| Bpu10I | CCTNAGC | 1 cut(s) | 554 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 947 |
| Bpu14I | TTCGAA | 2 cut(s) | 1311, 1381 |
| BpuEI | CTTGAG | 3 cut(s) | 242, 484, 1334 |
| BsaHI | GRCGYC | 1 cut(s) | 285 |
| BsaJI | CCNNGG | 7 cut(s) | 171, 482, 537, 762, 1612, 1749, 1958 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 929 |
| Bse118I | RCCGGY | 1 cut(s) | 491 |
| Bse1I | ACTGG | 5 cut(s) | 1409, 1464, 1503, 1732, 1987 |
| Bse3DI | GCAATG | 2 cut(s) | 805, 1661 |
| BseBI | CCWGG | 3 cut(s) | 484, 1623, 1942 |
| BseDI | CCNNGG | 7 cut(s) | 171, 482, 537, 762, 1612, 1749, 1958 |
| BseGI | GGATG | 3 cut(s) | 1067, 1414, 1789 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 929 |
| BseMI | GCAATG | 2 cut(s) | 805, 1661 |
| BseMII | CTCAG | 7 cut(s) | 63, 102, 147, 568, 1092, 1313, 1685 |
| BseNI | ACTGG | 5 cut(s) | 1409, 1464, 1503, 1732, 1987 |
| BseRI | GAGGAG | 3 cut(s) | 76, 121, 224 |
| BseXI | GCAGC | 7 cut(s) | 151, 362, 621, 624, 1076, 1281, 1630 |
| BseYI | CCCAGC | 1 cut(s) | 276 |
| BsgI | GTGCAG | 2 cut(s) | 1578, 1733 |
| Bsh1236I | CGCG | 1 cut(s) | 21 |
| Bsh1285I | CGRYCG | 1 cut(s) | 150 |
| BshFI | GGCC | 3 cut(s) | 495, 1526, 1732 |
| BshNI | GGYRCC | 1 cut(s) | 965 |
| BsiEI | CGRYCG | 1 cut(s) | 150 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1649 |
| BsiSI | CCGG | 1 cut(s) | 492 |
| BslFI | GGGAC | 2 cut(s) | 272, 1454 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 929 |
| BsmAI | GTCTC | 5 cut(s) | 830, 1182, 1306, 1490, 1828 |
| BsmFI | GGGAC | 2 cut(s) | 272, 1454 |
| BsnI | GGCC | 3 cut(s) | 495, 1526, 1732 |
| BsoBI | CYCGRG | 1 cut(s) | 1649 |
| Bsp119I | TTCGAA | 2 cut(s) | 1311, 1381 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 947 |
| Bsp19I | CCATGG | 1 cut(s) | 1958 |
| Bsp68I | TCGCGA | 1 cut(s) | 21 |
| BspACI | CCGC | 3 cut(s) | 253, 527, 675 |
| BspANI | GGCC | 3 cut(s) | 495, 1526, 1732 |
| BspCNI | CTCAG | 7 cut(s) | 62, 101, 146, 567, 1093, 1314, 1684 |
| BspFNI | CGCG | 1 cut(s) | 21 |
| BspHI | TCATGA | 1 cut(s) | 1843 |
| BspLI | GGNNCC | 3 cut(s) | 967, 1525, 1587 |
| BspMAI | CTGCAG | 1 cut(s) | 1549 |
| BspT104I | TTCGAA | 2 cut(s) | 1311, 1381 |
| BspT107I | GGYRCC | 1 cut(s) | 965 |
| BsrDI | GCAATG | 2 cut(s) | 805, 1661 |
| BsrFI | RCCGGY | 1 cut(s) | 491 |
| BsrI | ACTGG | 5 cut(s) | 1409, 1464, 1503, 1732, 1987 |
| BssAI | RCCGGY | 1 cut(s) | 491 |
| BssECI | CCNNGG | 7 cut(s) | 171, 482, 537, 762, 1612, 1749, 1958 |
| BssNAI | GTATAC | 1 cut(s) | 489 |
| BssNI | GRCGYC | 1 cut(s) | 285 |
| BssSI | CACGAG | 1 cut(s) | 678 |
| BssT1I | CCWWGG | 3 cut(s) | 537, 1749, 1958 |
| Bst1107I | GTATAC | 1 cut(s) | 489 |
| Bst2BI | CACGAG | 1 cut(s) | 678 |
| Bst2UI | CCWGG | 3 cut(s) | 484, 1623, 1942 |
| Bst4CI | ACNGT | 7 cut(s) | 175, 657, 727, 1253, 1438, 1556, 1706 |
| Bst6I | CTCTTC | 4 cut(s) | 112, 690, 852, 1309 |
| BstACI | GRCGYC | 1 cut(s) | 285 |
| BstBI | TTCGAA | 2 cut(s) | 1311, 1381 |
| BstC8I | GCNNGC | 3 cut(s) | 355, 1135, 1657 |
| BstDEI | CTNAG | 8 cut(s) | 49, 88, 133, 554, 947, 1101, 1322, 1671 |
| BstDSI | CCRYGG | 3 cut(s) | 171, 1612, 1958 |
| BstF5I | GGATG | 3 cut(s) | 1067, 1414, 1789 |
| BstFNI | CGCG | 1 cut(s) | 21 |
| BstH2I | RGCGCY | 1 cut(s) | 301 |
| BstHHI | GCGC | 1 cut(s) | 300 |
| BstMAI | GTCTC | 5 cut(s) | 830, 1182, 1306, 1490, 1828 |
| BstMCI | CGRYCG | 1 cut(s) | 150 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 597, 606, 804, 1374, 1983 |
| BstNI | CCWGG | 3 cut(s) | 484, 1623, 1942 |
| BstNSI | RCATGY | 3 cut(s) | 357, 1659, 1760 |
| BstSCI | CCNGG | 3 cut(s) | 482, 1621, 1940 |
| BstSFI | CTRYAG | 2 cut(s) | 1545, 1875 |
| BstUI | CGCG | 1 cut(s) | 21 |
| BstV1I | GCAGC | 7 cut(s) | 151, 362, 621, 624, 1076, 1281, 1630 |
| BstX2I | RGATCY | 1 cut(s) | 896 |
| BstYI | RGATCY | 1 cut(s) | 896 |
| BstZ17I | GTATAC | 1 cut(s) | 489 |
| BsuRI | GGCC | 3 cut(s) | 495, 1526, 1732 |
| BtgI | CCRYGG | 3 cut(s) | 171, 1612, 1958 |
| BtgZI | GCGATG | 2 cut(s) | 822, 1152 |
| BtsCI | GGATG | 3 cut(s) | 1067, 1414, 1789 |
| BtsIMutI | CAGTG | 5 cut(s) | 600, 1258, 1443, 1471, 1711 |
| BtuMI | TCGCGA | 1 cut(s) | 21 |
| Cac8I | GCNNGC | 3 cut(s) | 355, 1135, 1657 |
| CciI | TCATGA | 1 cut(s) | 1843 |
| CfoI | GCGC | 1 cut(s) | 300 |
| Cfr10I | RCCGGY | 1 cut(s) | 491 |
| Cfr13I | GGNCC | 5 cut(s) | 372, 634, 1461, 1524, 1730 |
| CseI | GACGC | 2 cut(s) | 156, 274 |
| Csp6I | GTAC | 5 cut(s) | 887, 966, 1389, 1935, 1963 |
| CviQI | GTAC | 5 cut(s) | 887, 966, 1389, 1935, 1963 |
| DdeI | CTNAG | 8 cut(s) | 49, 88, 133, 554, 947, 1101, 1322, 1671 |
| EaeI | YGGCCR | 1 cut(s) | 493 |
| Eam1104I | CTCTTC | 4 cut(s) | 112, 690, 852, 1309 |
| EarI | CTCTTC | 4 cut(s) | 112, 690, 852, 1309 |
| Eco130I | CCWWGG | 3 cut(s) | 537, 1749, 1958 |
| Eco47I | GGWCC | 3 cut(s) | 372, 634, 1461 |
| Eco57I | CTGAAG | 1 cut(s) | 624 |
| Eco88I | CYCGRG | 1 cut(s) | 1649 |
| EcoRII | CCWGG | 3 cut(s) | 482, 1621, 1940 |
| EcoT14I | CCWWGG | 3 cut(s) | 537, 1749, 1958 |
| ErhI | CCWWGG | 3 cut(s) | 537, 1749, 1958 |
| FaqI | GGGAC | 2 cut(s) | 272, 1454 |
| FauI | CCCGC | 2 cut(s) | 260, 520 |
| FbaI | TGATCA | 3 cut(s) | 267, 621, 1411 |
| FblI | GTMKAC | 3 cut(s) | 432, 488, 1152 |
| Fnu4HI | GCNGC | 7 cut(s) | 165, 351, 610, 613, 1065, 1270, 1619 |
| FokI | GGATG | 3 cut(s) | 1054, 1421, 1796 |
| Fsp4HI | GCNGC | 7 cut(s) | 165, 351, 610, 613, 1065, 1270, 1619 |
| FspBI | CTAG | 8 cut(s) | 66, 308, 347, 731, 1073, 1509, 1805, 1987 |
| GlaI | GCGC | 1 cut(s) | 299 |
| GluI | GCNGC | 7 cut(s) | 165, 351, 610, 613, 1065, 1270, 1619 |
| GsaI | CCCAGC | 1 cut(s) | 280 |
| HaeII | RGCGCY | 1 cut(s) | 301 |
| HaeIII | GGCC | 3 cut(s) | 495, 1526, 1732 |
| HapII | CCGG | 1 cut(s) | 492 |
| HgaI | GACGC | 2 cut(s) | 156, 274 |
| HhaI | GCGC | 1 cut(s) | 300 |
| Hin1I | GRCGYC | 1 cut(s) | 285 |
| Hin6I | GCGC | 1 cut(s) | 298 |
| HinP1I | GCGC | 1 cut(s) | 298 |
| HincII | GTYRAC | 2 cut(s) | 1153, 1552 |
| HindII | GTYRAC | 2 cut(s) | 1153, 1552 |
| HindIII | AAGCTT | 2 cut(s) | 1028, 1171 |
| HpaII | CCGG | 1 cut(s) | 492 |
| HphI | GGTGA | 7 cut(s) | 187, 199, 712, 721, 778, 1274, 1862 |
| Hpy166II | GTNNAC | 9 cut(s) | 171, 313, 433, 489, 1153, 1441, 1552, 1762, 1829 |
| Hpy188III | TCNNGA | 9 cut(s) | 20, 259, 398, 827, 916, 1351, 1363, 1421, 1844 |
| Hpy8I | GTNNAC | 9 cut(s) | 171, 313, 433, 489, 1153, 1441, 1552, 1762, 1829 |
| Hpy99I | CGWCG | 2 cut(s) | 1157, 1448 |
| HpyAV | CCTTC | 2 cut(s) | 599, 1776 |
| HpyCH4III | ACNGT | 7 cut(s) | 175, 657, 727, 1253, 1438, 1556, 1706 |
| HpyCH4V | TGCA | 9 cut(s) | 357, 1335, 1547, 1559, 1659, 1714, 1742, 1756, 1977 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 597, 606, 804, 1374, 1983 |
| HpyF3I | CTNAG | 8 cut(s) | 49, 88, 133, 554, 947, 1101, 1322, 1671 |
| Hsp92I | GRCGYC | 1 cut(s) | 285 |
| HspAI | GCGC | 1 cut(s) | 298 |
| KpnI | GGTACC | 1 cut(s) | 969 |
| Ksp22I | TGATCA | 3 cut(s) | 267, 621, 1411 |
| LmnI | GCTCC | 1 cut(s) | 1480 |
| Lsp1109I | GCAGC | 7 cut(s) | 151, 362, 621, 624, 1076, 1281, 1630 |
| LweI | GCATC | 5 cut(s) | 448, 774, 909, 1076, 1901 |
| MaeI | CTAG | 8 cut(s) | 66, 308, 347, 731, 1073, 1509, 1805, 1987 |
| MaeIII | GTNAC | 4 cut(s) | 98, 175, 1120, 1723 |
| MflI | RGATCY | 1 cut(s) | 896 |
| MluCI | AATT | 7 cut(s) | 405, 905, 938, 1383, 1416, 1775, 1913 |
| MlyI | GAGTC | 3 cut(s) | 17, 98, 122 |
| MroXI | GAANNNNTTC | 1 cut(s) | 221 |
| MseI | TTAA | 7 cut(s) | 596, 981, 1175, 1481, 1700, 1860, 1916 |
| MslI | CAYNNNNRTG | 6 cut(s) | 66, 440, 798, 917, 1751, 1848 |
| MspA1I | CMGCKG | 1 cut(s) | 1093 |
| MspI | CCGG | 1 cut(s) | 492 |
| MspR9I | CCNGG | 3 cut(s) | 484, 1623, 1942 |
| MvaI | CCWGG | 3 cut(s) | 484, 1623, 1942 |
| MvnI | CGCG | 1 cut(s) | 21 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 597, 606, 804, 1374, 1983 |
| NcoI | CCATGG | 1 cut(s) | 1958 |
| NlaIV | GGNNCC | 3 cut(s) | 967, 1525, 1587 |
| NmeAIII | GCCGAG | 1 cut(s) | 787 |
| NmuCI | GTSAC | 3 cut(s) | 98, 175, 1120 |
| NruI | TCGCGA | 1 cut(s) | 21 |
| NspI | RCATGY | 3 cut(s) | 357, 1659, 1760 |
| NspV | TTCGAA | 2 cut(s) | 1311, 1381 |
| OliI | CACNNNNGTG | 2 cut(s) | 66, 1751 |
| PaeI | GCATGC | 2 cut(s) | 357, 1659 |
| PaeR7I | CTCGAG | 1 cut(s) | 1649 |
| PagI | TCATGA | 1 cut(s) | 1843 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1134 |
| PdmI | GAANNNNTTC | 1 cut(s) | 221 |
| PflFI | GACNNNGTC | 1 cut(s) | 1148 |
| PkrI | GCNGC | 7 cut(s) | 166, 352, 611, 614, 1066, 1271, 1620 |
| Ple19I | CGATCG | 1 cut(s) | 150 |
| PleI | GAGTC | 3 cut(s) | 17, 98, 122 |
| PpsI | GAGTC | 3 cut(s) | 17, 98, 122 |
| PsiI | TTATAA | 1 cut(s) | 1230 |
| Psp6I | CCWGG | 3 cut(s) | 482, 1621, 1940 |
| PspFI | CCCAGC | 1 cut(s) | 276 |
| PspGI | CCWGG | 3 cut(s) | 482, 1621, 1940 |
| PspN4I | GGNNCC | 3 cut(s) | 967, 1525, 1587 |
| PspPI | GGNCC | 5 cut(s) | 372, 634, 1461, 1524, 1730 |
| PspXI | VCTCGAGB | 1 cut(s) | 1649 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1754, 1786 |
| PstI | CTGCAG | 1 cut(s) | 1549 |
| PsuI | RGATCY | 1 cut(s) | 896 |
| PsyI | GACNNNGTC | 1 cut(s) | 1148 |
| PvuI | CGATCG | 1 cut(s) | 150 |
| PvuII | CAGCTG | 1 cut(s) | 1093 |
| RruI | TCGCGA | 1 cut(s) | 21 |
| RsaI | GTAC | 5 cut(s) | 888, 967, 1390, 1936, 1964 |
| RsaNI | GTAC | 5 cut(s) | 887, 966, 1389, 1935, 1963 |
| RseI | CAYNNNNRTG | 6 cut(s) | 66, 440, 798, 917, 1751, 1848 |
| SalI | GTCGAC | 1 cut(s) | 1151 |
| SaqAI | TTAA | 7 cut(s) | 596, 981, 1175, 1481, 1700, 1860, 1916 |
| SatI | GCNGC | 7 cut(s) | 165, 351, 610, 613, 1065, 1270, 1619 |
| Sau96I | GGNCC | 5 cut(s) | 372, 634, 1461, 1524, 1730 |
| SchI | GAGTC | 3 cut(s) | 17, 98, 122 |
| ScrFI | CCNGG | 3 cut(s) | 484, 1623, 1942 |
| SfaNI | GCATC | 5 cut(s) | 448, 774, 909, 1076, 1901 |
| SfcI | CTRYAG | 2 cut(s) | 1545, 1875 |
| Sfr274I | CTCGAG | 1 cut(s) | 1649 |
| SfuI | TTCGAA | 2 cut(s) | 1311, 1381 |
| SinI | GGWCC | 3 cut(s) | 372, 634, 1461 |
| SlaI | CTCGAG | 1 cut(s) | 1649 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 66, 440, 798, 917, 1751, 1848 |
| SmlI | CTYRAG | 4 cut(s) | 257, 463, 1349, 1649 |
| SmoI | CTYRAG | 4 cut(s) | 257, 463, 1349, 1649 |
| SphI | GCATGC | 2 cut(s) | 357, 1659 |
| Sse9I | AATT | 7 cut(s) | 405, 905, 938, 1383, 1416, 1775, 1913 |
| SsiI | CCGC | 3 cut(s) | 253, 527, 675 |
| SspI | AATATT | 1 cut(s) | 1179 |
| SspMI | CTAG | 8 cut(s) | 66, 308, 347, 731, 1073, 1509, 1805, 1987 |
| StyD4I | CCNGG | 3 cut(s) | 482, 1621, 1940 |
| StyI | CCWWGG | 3 cut(s) | 537, 1749, 1958 |
| TaaI | ACNGT | 7 cut(s) | 175, 657, 727, 1253, 1438, 1556, 1706 |
| TasI | AATT | 7 cut(s) | 405, 905, 938, 1383, 1416, 1775, 1913 |
| Tru1I | TTAA | 7 cut(s) | 596, 981, 1175, 1481, 1700, 1860, 1916 |
| Tru9I | TTAA | 7 cut(s) | 596, 981, 1175, 1481, 1700, 1860, 1916 |
| TscAI | CASTG | 5 cut(s) | 607, 1258, 1443, 1471, 1711 |
| TseFI | GTSAC | 3 cut(s) | 98, 175, 1120 |
| TseI | GCWGC | 7 cut(s) | 164, 350, 609, 612, 1064, 1269, 1618 |
| Tsp45I | GTSAC | 3 cut(s) | 98, 175, 1120 |
| TspDTI | ATGAA | 7 cut(s) | 17, 135, 1074, 1212, 1278, 1545, 1869 |
| TspGWI | ACGGA | 1 cut(s) | 1601 |
| TspRI | CASTG | 5 cut(s) | 607, 1258, 1443, 1471, 1711 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1148 |
| VpaK11BI | GGWCC | 3 cut(s) | 372, 634, 1461 |
| XapI | RAATTY | 4 cut(s) | 938, 1383, 1416, 1775 |
| XceI | RCATGY | 3 cut(s) | 357, 1659, 1760 |
| XhoI | CTCGAG | 1 cut(s) | 1649 |
| XmiI | GTMKAC | 3 cut(s) | 432, 488, 1152 |
| XmnI | GAANNNNTTC | 1 cut(s) | 221 |
| XspI | CTAG | 8 cut(s) | 66, 308, 347, 731, 1073, 1509, 1805, 1987 |