RchiOBHm_Chr6g0287481

cellular macromolecule catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005522
Physical Location & Seq
Forward (+)
50867528 .. 50870140
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25789

Sequence Viewer

Length: 579 bp
ATGGAAGATATTATTATAAGGGTCGAGGGGACAAAAACCAGAAGTCAAGGCGGTGATGGAGATTGGAGAATGATGCGGAGGTGTTTGCTGACGAGTATGTGGGAAGAAATTTTGGATTGTTGCAAAAGGTTGTGGACTTGTGGGTGGGAAGAATTGATTATGGTGTGTGAATCATATACTGTGCTTTTTCGGGTGAAGAGTGAAGGACTGGTGCTTTTTCGGGGCGGAAATGATATGGTTTGTCTTGATGATGATGGGAAGCCCCTTGTGTTTTACGATGTAATAGAGAAATCTATGATTTGGATACTCAGTTTGGCTGTGAAATTAACCATCAAGATGCCACAGGCTAGAGATGTGGTGACCCTCAATGCTTATAGGGTCAACACCGTAAAGGACATCAAGTCTTATATATTTGAGAAGATGGGGATCCCATTTAGCAATCAGAAGCTTTTCTATAGGGGGATTTTTCTTTCTGATGAGGCTGATTCCCTAGATGGCTACAAAATGGAAGGTAATTGTGATATTTTTGCAACTTTTGGATCAGGAGATGATGATGAACAAGTTCCAAATGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

192

Amino Acids

22.08

Weight (kDa)

4.69

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 109 - 173 2.3e-07 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 17
AciI CCGC 3 cut(s) 51, 76, 225
AclWI GGATC 3 cut(s) 421, 434, 547
AcsI RAATTY 1 cut(s) 108
AgsI TTSAA 1 cut(s) 575
AhdI GACNNNNNGTC 1 cut(s) 400
AluBI AGCT 1 cut(s) 448
AluI AGCT 1 cut(s) 448
AlwI GGATC 3 cut(s) 421, 434, 547
ApoI RAATTY 1 cut(s) 108
Asp700I GAANNNNTTC 2 cut(s) 449, 561
AsuHPI GGTGA 3 cut(s) 65, 205, 370
BamHI GGATCC 1 cut(s) 426
BccI CCATC 5 cut(s) 50, 248, 338, 415, 488
BciVI GTATCC 1 cut(s) 297
BfaI CTAG 2 cut(s) 348, 491
BfmI CTRYAG 1 cut(s) 454
BfuI GTATCC 1 cut(s) 297
BmeRI GACNNNNNGTC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 428
BmsI GCATC 2 cut(s) 63, 327
BsaBI GATNNNNATC 1 cut(s) 425
Bse1I ACTGG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 425
BseJI GATNNNNATC 1 cut(s) 425
BseMII CTCAG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 426, 539
BspACI CCGC 3 cut(s) 51, 76, 225
BspCNI CTCAG 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 428
BspPI GGATC 3 cut(s) 421, 434, 547
BsrI ACTGG 1 cut(s) 213
BssMI GATC 2 cut(s) 426, 539
Bst4CI ACNGT 2 cut(s) 181, 388
Bst6I CTCTTC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 308
BstEII GGTNACC 1 cut(s) 358
BstKTI GATC 2 cut(s) 429, 542
BstMBI GATC 2 cut(s) 426, 539
BstPI GGTNACC 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 454
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuI GTATCC 1 cut(s) 297
CviJI RGCY 6 cut(s) 262, 317, 347, 448, 482, 498
CviKI_1 RGCY 6 cut(s) 262, 317, 347, 448, 482, 498
DdeI CTNAG 1 cut(s) 308
DpnI GATC 2 cut(s) 428, 541
DpnII GATC 2 cut(s) 426, 539
DriI GACNNNNNGTC 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 191
Eam1105I GACNNNNNGTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 191
EciI GGCGGA 1 cut(s) 240
Eco91I GGTNACC 1 cut(s) 358
EcoO65I GGTNACC 1 cut(s) 358
FaqI GGGAC 1 cut(s) 43
FspBI CTAG 2 cut(s) 348, 491
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 2 cut(s) 170, 485
HphI GGTGA 3 cut(s) 65, 205, 370
Hpy166II GTNNAC 2 cut(s) 135, 382
Hpy188I TCNGA 2 cut(s) 444, 475
Hpy188III TCNNGA 3 cut(s) 245, 334, 543
Hpy8I GTNNAC 2 cut(s) 135, 382
HpyAV CCTTC 2 cut(s) 197, 503
HpyCH4III ACNGT 2 cut(s) 181, 388
HpyCH4V TGCA 2 cut(s) 123, 530
HpyF3I CTNAG 1 cut(s) 308
Kzo9I GATC 2 cut(s) 426, 539
LpnPI CCDG 4 cut(s) 52, 194, 329, 528
LweI GCATC 2 cut(s) 63, 327
MaeI CTAG 2 cut(s) 348, 491
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 428, 541
MboI GATC 2 cut(s) 426, 539
MboII GAAGA 5 cut(s) 17, 116, 161, 208, 430
MflI RGATCY 1 cut(s) 426
MluCI AATT 4 cut(s) 108, 152, 323, 514
MnlI CCTC 4 cut(s) 19, 72, 374, 472
MroXI GAANNNNTTC 2 cut(s) 449, 561
MseI TTAA 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 335
NdeII GATC 2 cut(s) 426, 539
NlaIV GGNNCC 1 cut(s) 428
NmuCI GTSAC 1 cut(s) 358
PdmI GAANNNNTTC 2 cut(s) 449, 561
PfeI GAWTC 2 cut(s) 170, 485
PsiI TTATAA 1 cut(s) 17
PspEI GGTNACC 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 428
PsuI RGATCY 1 cut(s) 426
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 326
Sau3AI GATC 2 cut(s) 426, 539
SetI ASST 4 cut(s) 83, 131, 450, 514
SfaNI GCATC 2 cut(s) 63, 327
SfcI CTRYAG 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 4 cut(s) 108, 152, 323, 514
SsiI CCGC 3 cut(s) 51, 76, 225
SspMI CTAG 2 cut(s) 348, 491
TaaI ACNGT 2 cut(s) 181, 388
TaqI TCGA 1 cut(s) 24
TasI AATT 4 cut(s) 108, 152, 323, 514
TfiI GAWTC 2 cut(s) 170, 485
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseFI GTSAC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 570
XapI RAATTY 1 cut(s) 108
XmnI GAANNNNTTC 2 cut(s) 449, 561
XspI CTAG 2 cut(s) 348, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.