Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g21010 |
| pyrus_communis | pycom05g18030 |
| rosa_chinensis | RchiOBHm_Chr6g0287481 RchiOBHm_Chr6g0287491 |
| rosa_laevigata | RLG00000012490 RLG00000012492 |
| rosa_multiflora | Rmu_sc0007029.1_g000014 Rmu_sc0007029.1_g000017 Rmu_sc0007029.1_g000018 |
| rosa_roxburghii | Rroxscaffold_7G00181430 Rroxscaffold_7G00181450 Rroxscaffold_7G00181460 Rroxscaffold_7G00181470 |
| rosa_rugosa | Rorug06G0188000.1 Rorug06G0188300 |
| rosa_samantha | Rh6AG299600 Rh6AG299700 Rh6BG304900 Rh6BG305000 Rh6BG305100 Rh6CG304400 Rh6CG304600 Rh6CG304700 Rh6CG313400 Rh6CG313500 Rh6CG313700 Rh6DG296800 Rh6DG296900 |
| rosa_wichuraiana | Rw6G025850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1281 |
| Acc65I | GGTACC | 1 cut(s) | 1016 |
| AccB1I | GGYRCC | 1 cut(s) | 1016 |
| AccI | GTMKAC | 3 cut(s) | 483, 539, 1203 |
| AccII | CGCG | 1 cut(s) | 72 |
| AciI | CCGC | 3 cut(s) | 304, 578, 726 |
| AcoI | YGGCCR | 1 cut(s) | 544 |
| AcsI | RAATTY | 4 cut(s) | 989, 1434, 1467, 1826 |
| AcuI | CTGAAG | 1 cut(s) | 675 |
| AcyI | GRCGYC | 1 cut(s) | 336 |
| AfaI | GTAC | 5 cut(s) | 939, 1018, 1441, 1987, 2015 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 980 |
| AgsI | TTSAA | 9 cut(s) | 277, 383, 803, 1135, 1265, 1625, 1730, 1831, 1853 |
| AjnI | CCWGG | 3 cut(s) | 533, 1672, 1991 |
| AleI | CACNNNNGTG | 2 cut(s) | 117, 1802 |
| Alw26I | GTCTC | 6 cut(s) | 46, 881, 1233, 1357, 1541, 1879 |
| Ama87I | CYCGRG | 1 cut(s) | 1700 |
| AoxI | GGCC | 3 cut(s) | 544, 1575, 1781 |
| ApeKI | GCWGC | 7 cut(s) | 215, 401, 660, 663, 1115, 1320, 1669 |
| ApoI | RAATTY | 4 cut(s) | 989, 1434, 1467, 1826 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 272 |
| Asp718I | GGTACC | 1 cut(s) | 1016 |
| AspLEI | GCGC | 1 cut(s) | 351 |
| AspS9I | GGNCC | 5 cut(s) | 423, 685, 1512, 1575, 1781 |
| AsuHPI | GGTGA | 7 cut(s) | 238, 250, 763, 772, 829, 1325, 1913 |
| AsuII | TTCGAA | 2 cut(s) | 1362, 1432 |
| AvaI | CYCGRG | 1 cut(s) | 1700 |
| AvaII | GGWCC | 3 cut(s) | 423, 685, 1512 |
| BanI | GGYRCC | 1 cut(s) | 1016 |
| BauI | CACGAG | 1 cut(s) | 729 |
| BbvCI | CCTCAGC | 1 cut(s) | 605 |
| BbvI | GCAGC | 7 cut(s) | 202, 413, 672, 675, 1127, 1332, 1681 |
| BccI | CCATC | 7 cut(s) | 305, 790, 862, 971, 1048, 1682, 1892 |
| BceAI | ACGGC | 1 cut(s) | 228 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1375, 1409 |
| BciT130I | CCWGG | 3 cut(s) | 535, 1674, 1993 |
| BclI | TGATCA | 3 cut(s) | 318, 672, 1462 |
| BcoDI | GTCTC | 6 cut(s) | 46, 881, 1233, 1357, 1541, 1879 |
| BfaI | CTAG | 8 cut(s) | 117, 359, 398, 782, 1124, 1560, 1856, 2038 |
| BfmI | CTRYAG | 2 cut(s) | 1596, 1926 |
| BfoI | RGCGCY | 1 cut(s) | 352 |
| BglII | AGATCT | 1 cut(s) | 947 |
| BisI | GCNGC | 7 cut(s) | 216, 402, 661, 664, 1116, 1321, 1670 |
| BlpI | GCTNAGC | 1 cut(s) | 998 |
| BlsI | GCNGC | 7 cut(s) | 217, 403, 662, 665, 1117, 1322, 1671 |
| Bme1390I | CCNGG | 3 cut(s) | 535, 1674, 1993 |
| Bme18I | GGWCC | 3 cut(s) | 423, 685, 1512 |
| BmeT110I | CYCGRG | 1 cut(s) | 1700 |
| BmgT120I | GGNCC | 5 cut(s) | 423, 685, 1512, 1575, 1781 |
| BmiI | GGNNCC | 4 cut(s) | 29, 1018, 1576, 1638 |
| BmrFI | CCNGG | 3 cut(s) | 535, 1674, 1993 |
| BmrI | ACTGGG | 3 cut(s) | 1465, 1548, 1788 |
| BmsI | GCATC | 5 cut(s) | 499, 825, 960, 1127, 1952 |
| BmuI | ACTGGG | 3 cut(s) | 1465, 1548, 1788 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1876, 1908 |
| Bpu10I | CCTNAGC | 1 cut(s) | 605 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 998 |
| Bpu14I | TTCGAA | 2 cut(s) | 1362, 1432 |
| BpuEI | CTTGAG | 3 cut(s) | 293, 535, 1385 |
| BsaHI | GRCGYC | 1 cut(s) | 336 |
| BsaJI | CCNNGG | 7 cut(s) | 222, 533, 588, 813, 1663, 1800, 2009 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 980 |
| Bse118I | RCCGGY | 1 cut(s) | 542 |
| Bse1I | ACTGG | 6 cut(s) | 38, 1460, 1515, 1554, 1783, 2038 |
| Bse3DI | GCAATG | 2 cut(s) | 856, 1712 |
| BseBI | CCWGG | 3 cut(s) | 535, 1674, 1993 |
| BseDI | CCNNGG | 7 cut(s) | 222, 533, 588, 813, 1663, 1800, 2009 |
| BseGI | GGATG | 4 cut(s) | 5, 1118, 1465, 1840 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 980 |
| BseMI | GCAATG | 2 cut(s) | 856, 1712 |
| BseMII | CTCAG | 7 cut(s) | 114, 153, 198, 619, 1143, 1364, 1736 |
| BseNI | ACTGG | 6 cut(s) | 38, 1460, 1515, 1554, 1783, 2038 |
| BseRI | GAGGAG | 3 cut(s) | 127, 172, 275 |
| BseXI | GCAGC | 7 cut(s) | 202, 413, 672, 675, 1127, 1332, 1681 |
| BseYI | CCCAGC | 1 cut(s) | 327 |
| BsgI | GTGCAG | 2 cut(s) | 1629, 1784 |
| Bsh1236I | CGCG | 1 cut(s) | 72 |
| Bsh1285I | CGRYCG | 1 cut(s) | 201 |
| BshFI | GGCC | 3 cut(s) | 546, 1577, 1783 |
| BshNI | GGYRCC | 1 cut(s) | 1016 |
| BsiEI | CGRYCG | 1 cut(s) | 201 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1700 |
| BsiSI | CCGG | 1 cut(s) | 543 |
| BslFI | GGGAC | 2 cut(s) | 323, 1505 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 980 |
| BsmAI | GTCTC | 6 cut(s) | 46, 881, 1233, 1357, 1541, 1879 |
| BsmFI | GGGAC | 2 cut(s) | 323, 1505 |
| BsnI | GGCC | 3 cut(s) | 546, 1577, 1783 |
| BsoBI | CYCGRG | 1 cut(s) | 1700 |
| Bsp119I | TTCGAA | 2 cut(s) | 1362, 1432 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 998 |
| Bsp19I | CCATGG | 1 cut(s) | 2009 |
| Bsp68I | TCGCGA | 1 cut(s) | 72 |
| BspACI | CCGC | 3 cut(s) | 304, 578, 726 |
| BspANI | GGCC | 3 cut(s) | 546, 1577, 1783 |
| BspCNI | CTCAG | 7 cut(s) | 113, 152, 197, 618, 1144, 1365, 1735 |
| BspFNI | CGCG | 1 cut(s) | 72 |
| BspHI | TCATGA | 2 cut(s) | 51, 1894 |
| BspLI | GGNNCC | 4 cut(s) | 29, 1018, 1576, 1638 |
| BspMAI | CTGCAG | 1 cut(s) | 1600 |
| BspT104I | TTCGAA | 2 cut(s) | 1362, 1432 |
| BspT107I | GGYRCC | 1 cut(s) | 1016 |
| BsrDI | GCAATG | 2 cut(s) | 856, 1712 |
| BsrFI | RCCGGY | 1 cut(s) | 542 |
| BsrI | ACTGG | 6 cut(s) | 38, 1460, 1515, 1554, 1783, 2038 |
| BssAI | RCCGGY | 1 cut(s) | 542 |
| BssECI | CCNNGG | 7 cut(s) | 222, 533, 588, 813, 1663, 1800, 2009 |
| BssNAI | GTATAC | 1 cut(s) | 540 |
| BssNI | GRCGYC | 1 cut(s) | 336 |
| BssSI | CACGAG | 1 cut(s) | 729 |
| BssT1I | CCWWGG | 3 cut(s) | 588, 1800, 2009 |
| Bst1107I | GTATAC | 1 cut(s) | 540 |
| Bst2BI | CACGAG | 1 cut(s) | 729 |
| Bst2UI | CCWGG | 3 cut(s) | 535, 1674, 1993 |
| Bst4CI | ACNGT | 7 cut(s) | 226, 708, 778, 1304, 1489, 1607, 1757 |
| Bst6I | CTCTTC | 4 cut(s) | 163, 741, 903, 1360 |
| BstACI | GRCGYC | 1 cut(s) | 336 |
| BstBI | TTCGAA | 2 cut(s) | 1362, 1432 |
| BstC8I | GCNNGC | 3 cut(s) | 406, 1186, 1708 |
| BstDEI | CTNAG | 8 cut(s) | 100, 139, 184, 605, 998, 1152, 1373, 1722 |
| BstDSI | CCRYGG | 3 cut(s) | 222, 1663, 2009 |
| BstF5I | GGATG | 4 cut(s) | 5, 1118, 1465, 1840 |
| BstFNI | CGCG | 1 cut(s) | 72 |
| BstH2I | RGCGCY | 1 cut(s) | 352 |
| BstHHI | GCGC | 1 cut(s) | 351 |
| BstMAI | GTCTC | 6 cut(s) | 46, 881, 1233, 1357, 1541, 1879 |
| BstMCI | CGRYCG | 1 cut(s) | 201 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 648, 657, 855, 1425, 2034 |
| BstNI | CCWGG | 3 cut(s) | 535, 1674, 1993 |
| BstNSI | RCATGY | 3 cut(s) | 408, 1710, 1811 |
| BstSCI | CCNGG | 3 cut(s) | 533, 1672, 1991 |
| BstSFI | CTRYAG | 2 cut(s) | 1596, 1926 |
| BstUI | CGCG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 7 cut(s) | 202, 413, 672, 675, 1127, 1332, 1681 |
| BstX2I | RGATCY | 1 cut(s) | 947 |
| BstYI | RGATCY | 1 cut(s) | 947 |
| BstZ17I | GTATAC | 1 cut(s) | 540 |
| BsuRI | GGCC | 3 cut(s) | 546, 1577, 1783 |
| BtgI | CCRYGG | 3 cut(s) | 222, 1663, 2009 |
| BtgZI | GCGATG | 2 cut(s) | 873, 1203 |
| BtsCI | GGATG | 4 cut(s) | 5, 1118, 1465, 1840 |
| BtsIMutI | CAGTG | 5 cut(s) | 651, 1309, 1494, 1522, 1762 |
| BtuMI | TCGCGA | 1 cut(s) | 72 |
| Cac8I | GCNNGC | 3 cut(s) | 406, 1186, 1708 |
| CciI | TCATGA | 2 cut(s) | 51, 1894 |
| CfoI | GCGC | 1 cut(s) | 351 |
| Cfr10I | RCCGGY | 1 cut(s) | 542 |
| Cfr13I | GGNCC | 5 cut(s) | 423, 685, 1512, 1575, 1781 |
| CseI | GACGC | 2 cut(s) | 207, 325 |
| Csp6I | GTAC | 5 cut(s) | 938, 1017, 1440, 1986, 2014 |
| CviQI | GTAC | 5 cut(s) | 938, 1017, 1440, 1986, 2014 |
| DdeI | CTNAG | 8 cut(s) | 100, 139, 184, 605, 998, 1152, 1373, 1722 |
| EaeI | YGGCCR | 1 cut(s) | 544 |
| Eam1104I | CTCTTC | 4 cut(s) | 163, 741, 903, 1360 |
| EarI | CTCTTC | 4 cut(s) | 163, 741, 903, 1360 |
| Eco130I | CCWWGG | 3 cut(s) | 588, 1800, 2009 |
| Eco47I | GGWCC | 3 cut(s) | 423, 685, 1512 |
| Eco57I | CTGAAG | 1 cut(s) | 675 |
| Eco88I | CYCGRG | 1 cut(s) | 1700 |
| EcoRII | CCWGG | 3 cut(s) | 533, 1672, 1991 |
| EcoT14I | CCWWGG | 3 cut(s) | 588, 1800, 2009 |
| ErhI | CCWWGG | 3 cut(s) | 588, 1800, 2009 |
| FaqI | GGGAC | 2 cut(s) | 323, 1505 |
| FauI | CCCGC | 2 cut(s) | 311, 571 |
| FbaI | TGATCA | 3 cut(s) | 318, 672, 1462 |
| FblI | GTMKAC | 3 cut(s) | 483, 539, 1203 |
| Fnu4HI | GCNGC | 7 cut(s) | 216, 402, 661, 664, 1116, 1321, 1670 |
| FokI | GGATG | 3 cut(s) | 1105, 1472, 1847 |
| Fsp4HI | GCNGC | 7 cut(s) | 216, 402, 661, 664, 1116, 1321, 1670 |
| FspBI | CTAG | 8 cut(s) | 117, 359, 398, 782, 1124, 1560, 1856, 2038 |
| GlaI | GCGC | 1 cut(s) | 350 |
| GluI | GCNGC | 7 cut(s) | 216, 402, 661, 664, 1116, 1321, 1670 |
| GsaI | CCCAGC | 1 cut(s) | 331 |
| HaeII | RGCGCY | 1 cut(s) | 352 |
| HaeIII | GGCC | 3 cut(s) | 546, 1577, 1783 |
| HapII | CCGG | 1 cut(s) | 543 |
| HgaI | GACGC | 2 cut(s) | 207, 325 |
| HhaI | GCGC | 1 cut(s) | 351 |
| Hin1I | GRCGYC | 1 cut(s) | 336 |
| Hin6I | GCGC | 1 cut(s) | 349 |
| HinP1I | GCGC | 1 cut(s) | 349 |
| HincII | GTYRAC | 2 cut(s) | 1204, 1603 |
| HindII | GTYRAC | 2 cut(s) | 1204, 1603 |
| HindIII | AAGCTT | 2 cut(s) | 1079, 1222 |
| HpaII | CCGG | 1 cut(s) | 543 |
| HphI | GGTGA | 7 cut(s) | 238, 250, 763, 772, 829, 1325, 1913 |
| Hpy166II | GTNNAC | 9 cut(s) | 222, 364, 484, 540, 1204, 1492, 1603, 1813, 1880 |
| Hpy8I | GTNNAC | 9 cut(s) | 222, 364, 484, 540, 1204, 1492, 1603, 1813, 1880 |
| Hpy99I | CGWCG | 2 cut(s) | 1208, 1499 |
| HpyAV | CCTTC | 3 cut(s) | 31, 650, 1827 |
| HpyCH4III | ACNGT | 7 cut(s) | 226, 708, 778, 1304, 1489, 1607, 1757 |
| HpyCH4V | TGCA | 9 cut(s) | 408, 1386, 1598, 1610, 1710, 1765, 1793, 1807, 2028 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 648, 657, 855, 1425, 2034 |
| HpyF3I | CTNAG | 8 cut(s) | 100, 139, 184, 605, 998, 1152, 1373, 1722 |
| Hsp92I | GRCGYC | 1 cut(s) | 336 |
| HspAI | GCGC | 1 cut(s) | 349 |
| KpnI | GGTACC | 1 cut(s) | 1020 |
| Ksp22I | TGATCA | 3 cut(s) | 318, 672, 1462 |
| LmnI | GCTCC | 1 cut(s) | 1531 |
| Lsp1109I | GCAGC | 7 cut(s) | 202, 413, 672, 675, 1127, 1332, 1681 |
| LweI | GCATC | 5 cut(s) | 499, 825, 960, 1127, 1952 |
| MaeI | CTAG | 8 cut(s) | 117, 359, 398, 782, 1124, 1560, 1856, 2038 |
| MaeIII | GTNAC | 4 cut(s) | 149, 226, 1171, 1774 |
| MflI | RGATCY | 1 cut(s) | 947 |
| MluCI | AATT | 7 cut(s) | 456, 956, 989, 1434, 1467, 1826, 1964 |
| MlyI | GAGTC | 3 cut(s) | 68, 149, 173 |
| MroXI | GAANNNNTTC | 1 cut(s) | 272 |
| MseI | TTAA | 8 cut(s) | 15, 647, 1032, 1226, 1532, 1751, 1911, 1967 |
| MslI | CAYNNNNRTG | 6 cut(s) | 117, 491, 849, 968, 1802, 1899 |
| MspA1I | CMGCKG | 1 cut(s) | 1144 |
| MspI | CCGG | 1 cut(s) | 543 |
| MspR9I | CCNGG | 3 cut(s) | 535, 1674, 1993 |
| MvaI | CCWGG | 3 cut(s) | 535, 1674, 1993 |
| MvnI | CGCG | 1 cut(s) | 72 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 648, 657, 855, 1425, 2034 |
| NcoI | CCATGG | 1 cut(s) | 2009 |
| NlaIV | GGNNCC | 4 cut(s) | 29, 1018, 1576, 1638 |
| NmeAIII | GCCGAG | 1 cut(s) | 838 |
| NmuCI | GTSAC | 3 cut(s) | 149, 226, 1171 |
| NruI | TCGCGA | 1 cut(s) | 72 |
| NspI | RCATGY | 3 cut(s) | 408, 1710, 1811 |
| NspV | TTCGAA | 2 cut(s) | 1362, 1432 |
| OliI | CACNNNNGTG | 2 cut(s) | 117, 1802 |
| PaeI | GCATGC | 2 cut(s) | 408, 1710 |
| PaeR7I | CTCGAG | 1 cut(s) | 1700 |
| PagI | TCATGA | 2 cut(s) | 51, 1894 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1185 |
| PdmI | GAANNNNTTC | 1 cut(s) | 272 |
| PflFI | GACNNNGTC | 1 cut(s) | 1199 |
| PkrI | GCNGC | 7 cut(s) | 217, 403, 662, 665, 1117, 1322, 1671 |
| Ple19I | CGATCG | 1 cut(s) | 201 |
| PleI | GAGTC | 3 cut(s) | 68, 149, 173 |
| PpsI | GAGTC | 3 cut(s) | 68, 149, 173 |
| PsiI | TTATAA | 1 cut(s) | 1281 |
| Psp6I | CCWGG | 3 cut(s) | 533, 1672, 1991 |
| PspFI | CCCAGC | 1 cut(s) | 327 |
| PspGI | CCWGG | 3 cut(s) | 533, 1672, 1991 |
| PspN4I | GGNNCC | 4 cut(s) | 29, 1018, 1576, 1638 |
| PspPI | GGNCC | 5 cut(s) | 423, 685, 1512, 1575, 1781 |
| PspXI | VCTCGAGB | 1 cut(s) | 1700 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1805, 1837 |
| PstI | CTGCAG | 1 cut(s) | 1600 |
| PsuI | RGATCY | 1 cut(s) | 947 |
| PsyI | GACNNNGTC | 1 cut(s) | 1199 |
| PvuI | CGATCG | 1 cut(s) | 201 |
| PvuII | CAGCTG | 1 cut(s) | 1144 |
| RruI | TCGCGA | 1 cut(s) | 72 |
| RsaI | GTAC | 5 cut(s) | 939, 1018, 1441, 1987, 2015 |
| RsaNI | GTAC | 5 cut(s) | 938, 1017, 1440, 1986, 2014 |
| RseI | CAYNNNNRTG | 6 cut(s) | 117, 491, 849, 968, 1802, 1899 |
| SalI | GTCGAC | 1 cut(s) | 1202 |
| SaqAI | TTAA | 8 cut(s) | 15, 647, 1032, 1226, 1532, 1751, 1911, 1967 |
| SatI | GCNGC | 7 cut(s) | 216, 402, 661, 664, 1116, 1321, 1670 |
| Sau96I | GGNCC | 5 cut(s) | 423, 685, 1512, 1575, 1781 |
| SchI | GAGTC | 3 cut(s) | 68, 149, 173 |
| ScrFI | CCNGG | 3 cut(s) | 535, 1674, 1993 |
| SfaNI | GCATC | 5 cut(s) | 499, 825, 960, 1127, 1952 |
| SfcI | CTRYAG | 2 cut(s) | 1596, 1926 |
| Sfr274I | CTCGAG | 1 cut(s) | 1700 |
| SfuI | TTCGAA | 2 cut(s) | 1362, 1432 |
| SinI | GGWCC | 3 cut(s) | 423, 685, 1512 |
| SlaI | CTCGAG | 1 cut(s) | 1700 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 117, 491, 849, 968, 1802, 1899 |
| SmlI | CTYRAG | 4 cut(s) | 308, 514, 1400, 1700 |
| SmoI | CTYRAG | 4 cut(s) | 308, 514, 1400, 1700 |
| SphI | GCATGC | 2 cut(s) | 408, 1710 |
| Sse9I | AATT | 7 cut(s) | 456, 956, 989, 1434, 1467, 1826, 1964 |
| SsiI | CCGC | 3 cut(s) | 304, 578, 726 |
| SspI | AATATT | 1 cut(s) | 1230 |
| SspMI | CTAG | 8 cut(s) | 117, 359, 398, 782, 1124, 1560, 1856, 2038 |
| StyD4I | CCNGG | 3 cut(s) | 533, 1672, 1991 |
| StyI | CCWWGG | 3 cut(s) | 588, 1800, 2009 |
| TaaI | ACNGT | 7 cut(s) | 226, 708, 778, 1304, 1489, 1607, 1757 |
| TasI | AATT | 7 cut(s) | 456, 956, 989, 1434, 1467, 1826, 1964 |
| Tru1I | TTAA | 8 cut(s) | 15, 647, 1032, 1226, 1532, 1751, 1911, 1967 |
| Tru9I | TTAA | 8 cut(s) | 15, 647, 1032, 1226, 1532, 1751, 1911, 1967 |
| TscAI | CASTG | 5 cut(s) | 658, 1309, 1494, 1522, 1762 |
| TseFI | GTSAC | 3 cut(s) | 149, 226, 1171 |
| TseI | GCWGC | 7 cut(s) | 215, 401, 660, 663, 1115, 1320, 1669 |
| Tsp45I | GTSAC | 3 cut(s) | 149, 226, 1171 |
| TspDTI | ATGAA | 7 cut(s) | 68, 186, 1125, 1263, 1329, 1596, 1920 |
| TspGWI | ACGGA | 1 cut(s) | 1652 |
| TspRI | CASTG | 5 cut(s) | 658, 1309, 1494, 1522, 1762 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1199 |
| VpaK11BI | GGWCC | 3 cut(s) | 423, 685, 1512 |
| XapI | RAATTY | 4 cut(s) | 989, 1434, 1467, 1826 |
| XceI | RCATGY | 3 cut(s) | 408, 1710, 1811 |
| XhoI | CTCGAG | 1 cut(s) | 1700 |
| XmiI | GTMKAC | 3 cut(s) | 483, 539, 1203 |
| XmnI | GAANNNNTTC | 1 cut(s) | 272 |
| XspI | CTAG | 8 cut(s) | 117, 359, 398, 782, 1124, 1560, 1856, 2038 |